BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492186
Length=1799
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26270.1 | Symbols: PFK3 | phosphofructokinase 3 | chr4:1330... 1642 0.0
AT5G56630.1 | Symbols: PFK7 | phosphofructokinase 7 | chr5:2292... 893 0.0
AT4G29220.1 | Symbols: PFK1 | phosphofructokinase 1 | chr4:1440... 547 1e-154
> AT4G26270.1 | Symbols: PFK3 | phosphofructokinase 3 | chr4:13300795-13304347
REVERSE LENGTH=2086
Length=2086
Score = 1642 bits (889), Expect = 0.0
Identities = 1021/1082 (94%), Gaps = 19/1082 (2%)
Strand=Plus/Plus
Query 1 TTTACCGACTCCAATGGTCAAAA-TTCTCTAATCCTATAAAAAAGGGTCGCCTTGTTTTT 59
|||||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||||||
Sbjct 92 TTTACCGACTACAATGGTCAAAATTTCTCTACTCCTATAAAAATGGGTCGCCTTGTTTTT 151
Query 60 GATCTACGGATTTGATTCA----------T--CTTTCTTCCTGATTTCGTATTCAATTTG 107
|||| |||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 152 GATCAACGGATTTGATTCATCTTTCTTTTTACCTTTCTTCCTGCTTTCGTATTCAATTTG 211
Query 108 TCGTTGACGAGTTC-AAAGTCTCTATACGAGaaaaaaaaaaTTCGATTTTTAATTAAATT 166
| |||||| ||||| ||||||||||||| || ||||||||| ||| ||||| |||| |||
Sbjct 212 TAGTTGACCAGTTCAAAAGTCTCTATACCAG-AAAAAAAAA-TCG-TTTTTTATTATATT 268
Query 167 ATAAGAGTTTTCCCCTGAAGTTTGTTGTTCCTCTGTTTCGTGAG-TCGTTATGAGTACTG 225
|||||| |||||||||||| ||||||||||||||||||| | | |||||||||||||||
Sbjct 269 ATAAGACTTTTCCCCTGAA-ATTGTTGTTCCTCTGTTTCGAGCGTTCGTTATGAGTACTG 327
Query 226 TGGAAAGTAGCAAACCGAAGATCATCAATGGTTCTTGTGGTTATGTTCTAGAAGACGTTC 285
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 328 TGGAGAGTAGCAAACCGAAGATCATCAATGGCTCTTGTGGTTATGTTCTAGAAGATGTAC 387
Query 286 CTCATCTCTCCGATTACCTTCCTGGTCTTCCTACTTATCCTAATCCATTGCAAGACAATC 345
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 CGCATCTCTCCGATTACCTTCCTGGTCTTCCTACTTATCCTAATCCATTGCAAGACAATC 447
Query 346 CAGCATACTCAGTGGTGAAGCAATACTTTGTTGATGCTGATGATAGTGTTCCTCAAAAGA 405
|||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 448 CAGCTTACTCAGTGGTTAAGCAATACTTTGTTGATGCTGATGACAGTGTTCCTCAAAAGA 507
Query 406 TCGTTGTTCACAAGGATGGTCCAAGGGGGATTCATTTTAGACGAGCAGGGCCACGTCAAA 465
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 508 TCGTTGTTCACAAGGATGGTCCAAGGGGGATTCATTTTAGACGAGCCGGGCCACGTCAGA 567
Query 466 AGGTATACTTCGAATCTGATGAAGGGCATGCTTGCATAGTTACCTGTGGAGGTCTTTGTC 525
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 568 AGGTATACTTCGAATCTGATGAAGTGCATGCTTGCATAGTTACCTGTGGAGGTCTTTGTC 627
Query 526 CTGGCCTTAATACCGTGATTAGAGAAATAGTGAGCAGTCTATCTTATATGTATGGAGTGA 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 CTGGCCTTAATACCGTGATTAGAGAAATAGTGAGCAGTCTATCTTATATGTATGGAGTGA 687
Query 586 AGAGAATACTGGGAATAGATGGTGGATATAGAGGCTTTTATGCTAAGAATACTGTCTCCT 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 AGAGAATACTGGGAATAGATGGTGGATATAGAGGCTTTTATGCTAAGAATACTGTCTCCT 747
Query 646 TGGACTCTAAAGTCGTAAATGATATCCATAAGCGTGGAGGGACTATCCTCGGGACCTCGC 705
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 748 TGGACTCTAAAGTTGTAAATGATATCCATAAGCGTGGAGGGACTATCCTTGGGACCTCAC 807
Query 706 GAGGTGGTCACGATACCACAAAGATAGTTGACAGCATTCAAGATCGAGGAATCAATCAGG 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 GAGGTGGTCACGATACCACAAAGATAGTTGACAGCATTCAAGATCGAGGAATCAATCAGG 867
Query 766 TTTACATTATAGGAGGAGATGGAACTCAGCGAGGAGCATCTGTTATATTTGAGGAAATTA 825
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 868 TTTACATTATAGGAGGAGATGGAACACAGCGAGGAGCATCTGTCATATTTGAGGAAATTA 927
Query 826 GACGACGTGGCCTGAAAGTTGCAGTTGTTGGAATCCCGAAAACAATCGATAATGACATAC 885
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 928 GAAGACGTGGCCTGAAAGTTGCAGTTATTGGAATCCCGAAAACAATCGATAATGACATAC 987
Query 886 CTGTGATAGACAAATCTTTTGGGTTTGACACAGCTGTAGAAGAGGCTCAACGAGCTATTA 945
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 988 CTGTGATAGACAAATCTTTTGGGTTTGACACTGCTGTAGAAGAGGCTCAACGAGCTATTA 1047
Query 946 ACGCAGCACATGTGGAAGCGGAGAGTATAGAGAACGGTATTGGCGTTGTCAAGCTTATGG 1005
| ||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||
Sbjct 1048 ATGCAGCACATGTGGAAGCCGAGAGTATAGAGAATGGTATCGGAGTTGTCAAGCTTATGG 1107
Query 1006 GCCGCTACAGCGGTTTCATAGCGATGTACGCGACTCTAGCAAGCAGAGATGTGGACTGCT 1065
| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1108 GTCGCTACAGCGGGTTCATAGCGATGTATGCCACTCTAGCAAGCAGAGATGTGGACTGCT 1167
Query 1066 GT 1067
||
Sbjct 1168 GT 1169
Score = 1090 bits (590), Expect = 0.0
Identities = 699/749 (93%), Gaps = 18/749 (2%)
Strand=Plus/Plus
Query 1068 GAAGGTGGACTGTTTGAGTACATAGAGAAACGGCTCAAGGAGAGTGGTCATATGGTGCTT 1127
||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||
Sbjct 1203 GAAGGCGGACTGTTTGAGTACATAGAGAAACGACTCAAGGAGAGCGGTCACATGGTTCTT 1262
Query 1128 GTGATTGCAGAAGGTGCAGGACAAGATCTAATGTCAAAGAGCATGGAATCTATGACACTC 1187
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1263 GTGATTGCAGAAGGTGCAGGACAAGATCTAATGTCGAAGAGCATGGAATCTATGACACTC 1322
Query 1188 AAGGATGCATCTGGTAACAAACTTCTCAAAGATGTTGGTCTTTGGTTGTCACAAAGCATC 1247
|| ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||
Sbjct 1323 AAAGATGCATCTGGTAACAAACTTCTTAAAGATGTTGGCCTTTGGCTGTCACAAAGCATC 1382
Query 1248 AAGGATCATTTTAATCAGAAGAAGATGGTGATGAACCTCAAGTACATAGATCCAACGTAC 1307
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1383 AAGGATCATTTTAATCAGAAGAAGATGGTGATGAACCTCAAGTACATAGATCCAACATAC 1442
Query 1308 ATGATTCGGGCTATTCCTAGCAATGCGTCAGACAATGTTTATTGTACACTTCTGGCTCAG 1367
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 ATGATTCGAGCTGTTCCTAGCAATGCGTCAGACAATGTTTATTGTACACTTCTGGCTCAG 1502
Query 1368 AGTGCAGTGCACGGTGCAATGGCTGGATACACTGGCTATATCAGTGGTTTAGTGAACGGA 1427
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1503 AGTGCAGTGCACGGTGCAATGGCTGGATACACTGGCTATATCAGTGGTCTAGTGAACGGA 1562
Query 1428 AGACAAACCTACATACCCTTCTACAGGATAACGGAGAAACAGAACCATGTGGTGATCACA 1487
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1563 AGACAAACCTACATACCCTTTTACAGGATAACGGAGAAACAGAACCATGTGGTGATCACA 1622
Query 1488 GACAGGATGTGGGCAAGGCTACTATCTTCGACAAACCAGCCGAGTTTCTTGGGCCCCAAA 1547
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1623 GACAGGATGTGGGCAAGGCTACTCTCTTCGACAAACCAGCCGAGTTTCTTGGGCCCCAAA 1682
Query 1548 GATGTCTTTGATAATAAAGAGAAGCCGATGTCGGCTCTCCTGGACGATGGCAACTGCAAT 1607
||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 1683 GATGTCTTTGATAATAAAGAGAAACCGATGTCGGCTCTCCTTGACGATGGTAACTGCAAT 1742
Query 1608 GGCATGGTCGATGTTCCTCCAGTCACCAAAGAGATCAACAAGTGACCTGAACATAGGAAC 1667
||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1743 GGCGTGGTGGATGTTCCTCCAGTCACCAAAGAGATCACCAAGTGACCTGAACATAAGAAC 1802
Query 1668 AACGACATAA--GCTTTGGCGTTTTCAAATGGTGTTACAAGTTTTAGGTAG--GAGTAAA 1723
||||||| || |||||| |||||||||| | ||||||| ||||||||||| |||||||
Sbjct 1803 AACGACAGAAAAGCTTTG-CGTTTTCAAAAGATGTTACATGTTTTAGGTAGTTGAGTAAA 1861
Query 1724 ATAAAAGGGTTTTGACTGTTTTACCCTTTTTGGCA---CAA--CA-T-------AGATGC 1770
|||| ||||| ||||| |||||||||||||||||| ||| || | ||||||
Sbjct 1862 ATAATAGGGTGTTGACGGTTTTACCCTTTTTGGCATAACAAAGCAATCTTTGTTAGATGC 1921
Query 1771 CTCATGTTGTAATTTTCCACGTCCTGATG 1799
|||| |||||||||||||||||| |||||
Sbjct 1922 CTCACGTTGTAATTTTCCACGTCATGATG 1950
> AT5G56630.1 | Symbols: PFK7 | phosphofructokinase 7 | chr5:22923922-22926963
FORWARD LENGTH=2082
Length=2082
Score = 893 bits (483), Expect = 0.0
Identities = 723/840 (86%), Gaps = 12/840 (1%)
Strand=Plus/Plus
Query 230 AAGTAGCAAACCGAAGATCATCAATGGTTCTTGTGGTTATGTTCTAGAAGACGTTCCTCA 289
||||| ||| |||||||| |||| ||| || |||||||| ||||| |||||||||||||
Sbjct 404 AAGTAACAAGCCGAAGATTGTCAACGGTCCTGGTGGTTATATTCTACAAGACGTTCCTCA 463
Query 290 TCTC-TCCGATTACCTTCCTGGTCTTCCTACTTATCCTAATCCATTGCAAGACAATCCAG 348
|||| | ||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 464 TCTCAT-TGATTACCTTCCTGATCTTCCTACTTATCCAAATCCATTGCAAGACAATCCAG 522
Query 349 CATACTCAGTGGTGAAGCAATACTTTGTTGATGCTGATGATAGTGTTCCTCAAAAGATCG 408
| ||||||||||| ||||||||||||||| |||||||||||||||| ||| | ||| | |
Sbjct 523 CTTACTCAGTGGTTAAGCAATACTTTGTTCATGCTGATGATAGTGTCCCTGAGAAGGTTG 582
Query 409 TTGTTCACAAGGATGGTCCAAGGGGGA-TTCATTTTAGACGAGCAGGGCCACGTCAAAAG 467
||||||||||||||||||||| | ||| | ||||| || || || || ||||||||||||
Sbjct 583 TTGTTCACAAGGATGGTCCAA-GAGGAGTCCATTTCAGGCGTGCTGGTCCACGTCAAAAG 641
Query 468 GTATACTTCGAATCTGATGAAGGGCATGCTTGCATAGTTACCTGTGGAGGTCTTTGTCCT 527
|| ||||| || ||||| |||| ||||||||| |||||||| ||||||||||| |||||
Sbjct 642 GTTTACTTTGAGTCTGACGAAGTGCATGCTTGTATAGTTACATGTGGAGGTCTCTGTCCC 701
Query 528 GGCCTTAATACCGTGATTAGAGAAATAGTGAGCAGTC-TATCTTATATGTATGGAGTGAA 586
|| || |||||||||||||||||| | |||||||| | |||| || ||||||||||| ||
Sbjct 702 GGTCTCAATACCGTGATTAGAGAAGTTGTGAGCAG-CTTATCATACATGTATGGAGTAAA 760
Query 587 GAGAATACTGGGAATAGATGGTGGATATAGAGGCTTTTATGCTAAGAATACTGTCTCCTT 646
|||||| || ||||| ||||||||||| ||||| ||||| || ||||||||| || ||||
Sbjct 761 GAGAATTCTTGGAATCGATGGTGGATACAGAGGATTTTACGCCAAGAATACTATCCCCTT 820
Query 647 GGACTCTAAAGTCGTAAATGATATCCATAAGCGTGGAGGGACTATCCTCGGGACCTCGCG 706
||||||||||||| |||||||||||||| || ||||| || ||| | |||||||| |
Sbjct 821 AAACTCTAAAGTCGTGAATGATATCCATAAACGCGGAGGAACAATCATTGGGACCTCAAG 880
Query 707 AGGTGGTCACGATACC-ACAAAGATAGTTGACAGCATTCAAGATCGAGGAATCAATCAGG 765
|||||| || |||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 881 AGGTGGACATGATACCAAC-AAGATAGTTGATAGCATTCAAGATCGAGGAATCAATCAGG 939
Query 766 TTTACATTATAGGAGGAGATGGAACTCAGCGAGGAGCATCTGTTATATTTGAGGAAATTA 825
|||||||||| |||||||||||||| |||||||| || || || ||||||||||||||||
Sbjct 940 TTTACATTATTGGAGGAGATGGAACCCAGCGAGGTGCTTCAGTAATATTTGAGGAAATTA 999
Query 826 GACGACGTGGCCTGAAAGTTGCAGTTGTTGGAATCCCGAAAACAATCGATAATGACATAC 885
|| ||||| | || |||||||| || |||||||| || ||||| || |||||||| || |
Sbjct 1000 GAAGACGTCGACTAAAAGTTGCTGTGGTTGGAATTCCAAAAACTATTGATAATGATATTC 1059
Query 886 CTGTGATAGACAAATCTTTTGGGTTTGACACAGCTGTAGAAGAGGCTCAACGAGCTATTA 945
| |||||||| |||||||||||||||||||| ||||| || || ||||||||||| ||||
Sbjct 1060 CGGTGATAGATAAATCTTTTGGGTTTGACACTGCTGTGGAGGAAGCTCAACGAGCGATTA 1119
Query 946 ACGCAGCACATGTGGAAGCGGAGAGTA-TAGAGAACGGTATTGGCGTTGTCAAGCTTATG 1004
||||||||||||| ||||| ||||||| | ||||| ||||| || ||||||||||||||
Sbjct 1120 ACGCAGCACATGTTGAAGCCGAGAGTAAT-GAGAATGGTATCGGTTTTGTCAAGCTTATG 1178
Query 1005 GGCCGCTACAGCGGTTTCATAGCGATGTACGCGAC-TCTAGCAAGCAGAGATGTGGACTG 1063
|| || |||||||| | |||||||||||| || || | |||| ||||||||||| |||||
Sbjct 1179 GGTCGTTACAGCGGGTACATAGCGATGTATGCTACAT-TAGCCAGCAGAGATGTTGACTG 1237
> AT4G29220.1 | Symbols: PFK1 | phosphofructokinase 1 | chr4:14403347-14406592
REVERSE LENGTH=2068
Length=2068
Score = 547 bits (296), Expect = 1e-154
Identities = 646/814 (79%), Gaps = 28/814 (3%)
Strand=Plus/Plus
Query 264 GGTTATGTTCTAGAAGACGTTCCTCATCTCTCCGATTACCTTCCTGGTCTTCCTACTTAT 323
|||||| |||| ||||||||||||||| ||||||| || |||||| || |||||| |||
Sbjct 424 GGTTATATTCTTGAAGACGTTCCTCATTTCTCCGACGACTTTCCTGATCATCCTACATAT 483
Query 324 CCTAATCCATTGCAAGACAATCCAGCATACTCAGTGGTGAAGCAATACTTTGTTGATGCT 383
|| |||||||| ||||||||| |||| ||||| || || ||||| || ||||| ||||
Sbjct 484 CCAAATCCATTACAAGACAATGCAGCTTACTCTGTTGTTAAGCAGTATTTTGTCGATGAG 543
Query 384 GATGATA-GTGTTCCTCAAAAGATCGTTGTTCA-CAAGGATGGTCCAAGGGGGATTCATT 441
||||| | | ||||||||||| || || ||||| | ||| |||| ||||| | ||||
Sbjct 544 GATGACACG-GTTCCTCAAAAAATAGTAGTTCATC-CTGATAGTCCTAGGGGAACGCATT 601
Query 442 TTAGACGAGCAGGGCCACGTCAAAAGGTATACTTCGAATCTGATGAAGGGCATGCTTGCA 501
| | || ||||| |||||||||| ||| ||||| || || ||||| | | ||||||||
Sbjct 602 TCCGTCGTGCAGGACCACGTCAAAGGGTTTACTTTGAGTCGGATGATGTTCTTGCTTGCA 661
Query 502 TAGTTACCTGTGGAGGTCTTTGTCCTGGCCTTAATACCGTGATTAGAGAAATAG--TGAG 559
| ||||| ||||| ||||| ||||| || |||||||| ||||| ||||| |||| || |
Sbjct 662 TTGTTACATGTGGCGGTCTATGTCCCGGGCTTAATACTGTGATCAGAGAGATAGTTTGTG 721
Query 560 CAGTCTATCTTATATGTATGGAGTGAAGAGAATACTGGGAATAGATGGTGGATATAGAGG 619
| | |||||||||||||||| || |||||||| || || || ||||| || || |||||
Sbjct 722 GA-T-TATCTTATATGTATGGTGTCAAGAGAATCCTTGGCATTGATGGAGGTTACAGAGG 779
Query 620 CTTTTATGCTAAG-AATACTGTCTC-CTTGGACTCTAAAGTC-GTAAATGATATCCATAA 676
||||| || || || || || | ||||||| |||| | || |||||||||||| |
Sbjct 780 ATTTTACGC-GAGAAACACAATC-CATTTGGACT-TAAAAACAGTGAATGATATCCAT-A 835
Query 677 G-CGTGGAGGGACTATCCTCGGGACCTCGCGAGGTGGTCACGATACCACAAAGATAGTTG 735
| | ||||| |||||||||||||| || |||| |||||| | ||||| |||||||| |
Sbjct 836 GAAGCGGAGGAACTATCCTCGGGACTTCAAGAGGCGGTCACAACACCACCAAGATAGTAG 895
Query 736 ACAGCATTCAAGATCGAGGAATCAATCAGGTTTACATTATAGGAGGAGATGGAACTCAGC 795
| || ||||||||||| || || || |||||||| || || || ||||||||| | |||
Sbjct 896 ATAGTATTCAAGATCGCGGGATTAACCAGGTTTATATAATCGGTGGAGATGGATCACAGA 955
Query 796 GAGGAGCATCTGTTATATTTGAGGAAATTA-GACGACG-TGGCCTGAAAGTTGCAGTTGT 853
||||||| ||| |||||| ||||| |||| || ||| | || |||||||| ||||
Sbjct 956 AAGGAGCAGCTGCTATATTCGAGGAGATTAGGA-AACGCAAG-CTTAAAGTTGCGGTTGC 1013
Query 854 TGGAATCCCGAAAACAATCGATAATGACATACCTGTGATAGACAAATCTTTTGGGTTTGA 913
||||||||||||||||| || |||||||| ||| | || || | |||||| ||||||||
Sbjct 1014 CGGAATCCCGAAAACAATTGACAATGACATTCCTATTATCGATAGATCTTTCGGGTTTGA 1073
Query 914 CACAGCTGTAGAAGAGGCTCAACGAGCTATTAACGCAGCACATGTGGAAGCGGAGA-G-T 971
|||||||||||||||||||||||| ||||| || ||||||||||| ||||| | | | |
Sbjct 1074 CACAGCTGTAGAAGAGGCTCAACGTGCTATCAATGCAGCACATGTCGAAGCT-ACAAGCT 1132
Query 972 ATAGAGAACGGTATTGG-CGTTGTCAAGCTTA-TGGGCCGCTACAGCGGTTTCATAGCGA 1029
| ||||| |||||||| | |||| ||| ||| |||| || |||||||| ||||| || |
Sbjct 1133 TT-GAGAATGGTATTGGTC-TTGTGAAG-TTAATGGGACGGTACAGCGGATTCATTGCAA 1189
Query 1030 TGTACGCGACTCTAGCAAGCAGAGATGTGGACTG 1063
|| | || |||||||| ||| |||||||||||||
Sbjct 1190 TGCATGCCACTCTAGCCAGCCGAGATGTGGACTG 1223
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89005566285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5