BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492188
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26250.1 | Symbols: AtGolS6, GolS6 | galactinol synthase 6 |... 1387 0.0
AT5G23790.1 | Symbols: AtGolS5, GolS5 | galactinol synthase 5 |... 1304 0.0
AT5G30500.1 | Symbols: | Nucleotide-diphospho-sugar transferas... 621 4e-177
> AT4G26250.1 | Symbols: AtGolS6, GolS6 | galactinol synthase 6
| chr4:13289641-13291084 FORWARD LENGTH=1042
Length=1042
Score = 1387 bits (751), Expect = 0.0
Identities = 925/1010 (92%), Gaps = 8/1010 (1%)
Strand=Plus/Plus
Query 14 TCGAGAAGAAG-ATCGAAGATGACGTGATGATGAGCCCTGATGGTGAT-AAAAGAGCTTA 71
|||||||| || ||| ||| |||||||| | |||||| ||| ||| | ||||| |||||
Sbjct 23 TCGAGAAG-AGTATCAAAGCTGACGTGACGGTGAGCCATGACCGTG-TGAAAAGGGCTTA 80
Query 72 TGTCACTTTCCTTGCCGGGAACAAAGACTACTGGATGGGTGTGGTTGGTCTAGCCAAAGG 131
|||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 81 CGTCACTTTCCTTGCTGGAAACAAAGACTACTGGATGGGTGTAGTTGGTCTAGCCAAGGG 140
Query 132 ACTCCGTAAAGTGAAATCTGCTTATCCTCTTGTGGTGGCTATTCTCCCGGACGTGCCTGA 191
||| ||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 141 ACTTCGTAAGGTGAAATCTGCTTATCCTCTTGTGGTTGCGATTCTCCCGGACGTGCCTGA 200
Query 192 AGAACACCGTCAAATCTTGGTCGCTCAGGGATGCATCATCCGTGAGATCGAACCAGTCTA 251
||||||||||||||| || | |||||||||||||||||||||||||| ||||| || ||
Sbjct 201 GGAACACCGTCAAATCCTGTTGGCTCAGGGATGCATCATCCGTGAGATTGAACCGGTTTA 260
Query 252 TCCCCCAGAAAACAAAACCGGTTATTCTATGGCTTATTATGTTATCAACTACTCCAAGCT 311
||| || |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 261 TCCACCGGAAAACAAAACCGGTTATTCAATGGCCTATTACGTTATCAACTACTCCAAGCT 320
Query 312 TCGTATTTGGGAGTTTGTGGAATATGAGAAGATGATCTATCTAGATGGAGACATTCAAGT 371
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 321 TCGTATTTGGGAGTTTGTGGAGTATGAAAAGATGATTTATCTAGATGGAGACATTCAAGT 380
Query 372 ATTTAGTAATATCGATCATCTTTTTGATACTCCTCGTGGCTATTTGTACGCTGTCAAAGA 431
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 381 ATTTAGTAACATCGATCATCTTTTCGATACTCCTCGTGGCTACTTGTACGCTGTCAAAGA 440
Query 432 TTGTTTTTGCGAGGTTTCTTGGTCCAAAACTCCTCAATACAAGATCGGTTACTGCCAACA 491
||| ||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 441 TTGCTTTTGCGAGATTTCTTGGTCCAAAACTCCTCAATTTAAGATAGGTTACTGCCAACA 500
Query 492 GTGTCCTGAAAAGGTGACTTGGCCTGTCGAAAGCCTTGGTTCTCCACCGCCGGTTTATTT 551
||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||
Sbjct 501 ATGTCCTGAAAAGGTGACATGGCCTGTTGAAAGTCTTGGTTCTCCACCGCCGGTATATTT 560
Query 552 CAACGCCGGTATGTTGGTTTTTGAACC-ACATCTTGACACTTACGAGGATCTTCTTCGTG 610
||||||||||||||||||||||||||| | |||| ||||||||||||||| |||||||
Sbjct 561 CAACGCCGGTATGTTGGTTTTTGAACCTA-ATCTCCTCACTTACGAGGATCTCCTTCGTG 619
Query 611 TTGTTCAAATCACCACTCCAACTTACTTTGCCGAACAGGATTTTCTGAATGATTACTTTA 670
||||||||||||||||||| || || |||||||||||||||||||||||||| |||||||
Sbjct 620 TTGTTCAAATCACCACTCCGACATATTTTGCCGAACAGGATTTTCTGAATGAATACTTTA 679
Query 671 GAGACATTTACAAGCCAATCCCTTCGACCTATAACCTCGTAATGGCTATGCTTTGGCGTC 730
||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 680 CAGACATTTACAAGCCCATCCCTTCGACCTACAACCTTGTAATGGCTATGCTTTGGCGTC 739
Query 731 ATCCTGAACACGTTGACCTTGACCAAATCAGTGTTGTTCATTACTGTGCTAATGGTTCGA 790
||||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||
Sbjct 740 ATCCTGAACACATTGACCTTGACCAAATCAGTGTTATTCATTATTGTGCAAATGGTTCGA 799
Query 791 AGCCTTGGAAATTCGATGAAGCTGAAGAGCATATGGATCGTGAAGACATAAAAATGTTGG 850
||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 800 AGCCTTGGAGATTCGATGAAACTGAAGAGCATATGGATCGTGAGGACATAAAAATGTTGG 859
Query 851 TGAAGAAATGGTGGGACATTTACGAAGATGCGAGTTTAGACTACAAGAACTTTGTCGAGA 910
|||||||||||||||| ||||| |||||| |||||||||| |||||||||||||||||||
Sbjct 860 TGAAGAAATGGTGGGATATTTATGAAGATTCGAGTTTAGATTACAAGAACTTTGTCGAGA 919
Query 911 CTGAGCCCAAGCTAAGTCCGATCACA-GCAACCTTGGCTTCCAAGGAATCTGTTGGCGAT 969
||||| |||| || |||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 920 CTGAGTCCAAACTGAGTCCGATCA-ATGCAACCTTGGCTTCCAAGGAATCTGTTGGCGAT 978
Query 970 GTCCTTACGAGCCTTGCCCCTTCTGCCGCATAACCAATCCTTTATGTGGA 1019
||||||| || ||||||||||| || ||||||||||| |||||||||||
Sbjct 979 GTCCTTATTAGTCTTGCCCCTTCCGCTGCATAACCAATTCTTTATGTGGA 1028
> AT5G23790.1 | Symbols: AtGolS5, GolS5 | galactinol synthase 5
| chr5:8020104-8021597 REVERSE LENGTH=1081
Length=1081
Score = 1304 bits (706), Expect = 0.0
Identities = 914/1014 (90%), Gaps = 15/1014 (1%)
Strand=Plus/Plus
Query 14 TCGAGAAGAAGATCGAAGATGACGTGATGATGAGCCCTGATGGTGAT-AAAAGAGCTTAT 72
||||||||| |||||||| |||||| | | |||||| ||| |||| | || | |||||
Sbjct 14 TCGAGAAGAGGATCGAAGCTGACGTTACGGTGAGCCATGAAGGTG-TGGAACGGGCTTAC 72
Query 73 GTCACTTTCCTTGCCGGGAACAAAGACTACTGGATGGGTGTGGTTGGTCTAGCCAAAGGA 132
|| |||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||
Sbjct 73 GTAACTTTCCTCGCCGGAAACAAAGACTACTGGATGCTTGTAGTTGGTCTAGCCAAAGGT 132
Query 133 CTCCGTAAAGTGAAATCTGCTTATCCTCTTGTGGTGGCTATTCTCCCGGACGTGCCTGAA 192
|| |||||||||||||| |||||||| || || ||||| | |||||| |||||||||||
Sbjct 133 CTTCGTAAAGTGAAATCAGCTTATCCACTCGTTGTGGCGACTCTCCCTGACGTGCCTGAG 192
Query 193 GAACACCGTCAAATCTTGGTCGCTCAGGGATGCATCATCCGTGAGATCGAACCAGTCTAT 252
||||| ||||||||||| || | ||||||||||||||||||||| |||||||| ||||||
Sbjct 193 GAACATCGTCAAATCTTAGTGGATCAGGGATGCATCATCCGTGACATCGAACCGGTCTAT 252
Query 253 CCCCCAGAAAACAAAACCGGTTATTCTATGGCTTATTATGTTATCAACTACTCCAAGCTT 312
|| || || |||| ||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 253 CCTCCGGAGAACACGACCGGTTATTCTATGGCTTATTACGTTATCAACTACTCCAAACTT 312
Query 313 CGTATTTGGGAGTTTGTGGAATATGAGAAGATGATCTATCTAGATGGAGACATTCAAGTA 372
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 313 CGTATTTGGGAGTTTGTGGAGTATGAGAAGATGATATATCTAGATGGAGACATACAAGTG 372
Query 373 TTT-AGTAATATCGATCATCTTTTTGATACTCCTCGTGGCTATTTGTACGCTGTCAAAGA 431
||| || || || ||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 373 TTTAAG-AACATTGATCATCTTTTCGATACTCCTCGTGGCTACTTGTACGCAGTCAAAGA 431
Query 432 TTGTTTTTGCGAGGTTTCTTGGTCCAAAACTCCTCAATACAAGATCGGTTACTGCCAACA 491
|| ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 432 CTGCTTTTGTGAGGTGTCTTGGTCCAAAACTCCTCAATACAAGATCGGTTATTGCCAACA 491
Query 492 GTGTCCTGAAAAGGTGACTTGGCCTGTCGAAAGCCTT-GGTTCTCCACCGCCGGTTTATT 550
|| ||||||||||| ||||||||||| ||||| || ||| ||||||||||||| ||||
Sbjct 492 GTCACCTGAAAAGGTAACTTGGCCTGTTGAAAG-TTTAGGTGCTCCACCGCCGGTATATT 550
Query 551 TCAACGCCGGTATGTTGGTTTTTGAACCACATCTTGACACTTACGAGGATCTTCTTCGTG 610
|||||||||||||||||||||||| |||| |||||| ||||||||||||||| |||||||
Sbjct 551 TCAACGCCGGTATGTTGGTTTTTGGACCAAATCTTGTCACTTACGAGGATCTCCTTCGTG 610
Query 611 TTGTTCAAATCACCACTCCAACTTACTTTGCCGAACAGGATTTTCTGAATGAT-TACTTT 669
||||||||||||||||||||||||| |||||||| ||||| ||||||||| || |||||
Sbjct 611 TTGTTCAAATCACCACTCCAACTTATTTTGCCGAGCAGGACTTTCTGAAT-ATATACTTC 669
Query 670 AGAGACATTTACAAGCCAATCCCTTCGACCTATAACCTCGTAATGGCTATGCTTTGGCGT 729
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 670 AGAGACATTTACAAGCCAATCCCTTCGACCTACAACCTCGTAATGGCTATGCTTTGGCGT 729
Query 730 CATCCTGAACACGTTGACCTTGACCAAATCAGTGTTGTTCATTACTGTGCTAATGGTTCG 789
||||| |||||| |||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 730 CATCCCGAACACATTGACCTTGACCAAATCAGTGTTGTTCACTATTGTGCTAATGGTTCG 789
Query 790 AAGCCTTGGAAATTCGATGAAGCTGAAGAGCATATGGATCGTGAAGACATAAAAATGTTG 849
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 790 AAGCCTTGGAAATTCGATGAAGCTGAAGAGCATATGGATCGAGAAGACATAAAAATGTTG 849
Query 850 GTGAAGAAATGGTGGGACATTTACGAAGATGCGAGTTTAGACTACAAGAACTTT-GTCGA 908
|||||||| |||||||| |||||||||||| ||||||||||||||||||| ||| |||||
Sbjct 850 GTGAAGAAGTGGTGGGAGATTTACGAAGATTCGAGTTTAGACTACAAGAA-TTTCGTCGA 908
Query 909 GACTGAGCCCAAGCT-AAGTCCGATCACAGCAACCTTGGCTTCCAAGGAATCT-GTTGGC 966
||||||| ||||||| || |||| |||| |||||||||||||||||| || || ||||||
Sbjct 909 GACTGAGTCCAAGCTGAA-TCCGGTCACTGCAACCTTGGCTTCCAAGAAA-CTTGTTGGC 966
Query 967 GATGTCCTTACGAGCCTTGCCCCTTCTGCCGCATAACCAATCCTTT-ATGTGGA 1019
|||||||| || |||||||||||||| ||||||||||||||||||| |||||||
Sbjct 967 GATGTCCTAACAAGCCTTGCCCCTTCCGCCGCATAACCAATCCTTTTATGTGGA 1020
> AT5G30500.1 | Symbols: | Nucleotide-diphospho-sugar transferases
superfamily protein | chr5:11615345-11616926 FORWARD LENGTH=987
Length=987
Score = 621 bits (336), Expect = 4e-177
Identities = 546/646 (85%), Gaps = 20/646 (3%)
Strand=Plus/Plus
Query 13 ATCGAGAAG-AAGATCGAAGATGACGTGATGATGAGCCCTGATGGT-GATAAAAGAGCTT 70
||||| ||| ||| | || | ||||||| | ||| ||| ||| | || ||||| ||||
Sbjct 22 ATCGA-AAGAAAGGTAGAGGCTGACGTGGCGGTGATTCCTAATGATGGA-AAAAGGGCTT 79
Query 71 ATGTCACTTTCCTTGCCGGGAACAAAGACTACTGGATGGGTGTGGTTGGTCTAGCCAAAG 130
| ||||||||||| || || ||| ||||||| |||||||||||||||||| ||||||| |
Sbjct 80 ACGTCACTTTCCTAGCTGGTAACCAAGACTATTGGATGGGTGTGGTTGGTTTAGCCAAGG 139
Query 131 GACTCCGTAAAGTGAAATCTGCTTATCCTCTTGTGGTGGCTATTCTCCCGGACGTGCCTG 190
|||| ||||| |||||| | |||||||||||||| |||||||| ||||| ||||| || |
Sbjct 140 GACTTCGTAAGGTGAAAGCAGCTTATCCTCTTGTTGTGGCTATGCTCCCAGACGTACC-G 198
Query 191 -AAGAACACCGTCAAATCTTGGTCGCTCAGGGATGCATCATCCGTGAGATCGAACCAGTC 249
|||||||||||||||||||||| ||||| ||||| |||||||| ||||| ||||| ||
Sbjct 199 AAAGAACACCGTCAAATCTTGGTGGCTCAAGGATGTATCATCCGGGAGATTGAACCGGTT 258
Query 250 TATCCCCCAGAAAACAAAACCGGTTATTCTATGGCTTATTATGTTATCAACTACTCCAAG 309
||||| || |||||| || | |||||| ||||||||||||| ||||||||||||||||||
Sbjct 259 TATCCGCCGGAAAACCAAGCTGGTTATGCTATGGCTTATTACGTTATCAACTACTCCAAG 318
Query 310 CTTCGTATTTGGGAGTTTGTGGAATATGAGAAGATGATCTATCTAGATGGAGACATTCAA 369
||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 319 CTTCGAATTTGGGAGTTTGTGGAATATGAGAAGATGATATATTTAGATGGAGACATACAA 378
Query 370 GTATTTAGTAATATCGATCATCTTTTTGATACTCC-TCGTGGCTATTTGTACGCTGTCAA 428
|| ||||| || ||||||||||| ||||| ||||| || |||||| |||||||| |||||
Sbjct 379 GTGTTTAGCAACATCGATCATCTATTTGACACTCCATC-TGGCTACTTGTACGCCGTCAA 437
Query 429 AGATTGTTTTTGCGAGGTTTCTTGGTCCAAAACTCCTCAATACAAGATCGGTTACTGCCA 488
||| ||||||||||||| ||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 438 AGACTGTTTTTGCGAGGGTTCTTGGTCAAAAACACCTCAATACAAGATTGGTTACTGCCA 497
Query 489 ACAGT-GTCCTGAAAAGGTGACTTGGCCTG-TCGAA-AGCCTTGGTTC-TCCACCGCCGG 544
||||| | || ||||| |||| ||||| | | ||| || |||||| | | |||||
Sbjct 498 ACAGTCGCCC-GAAAAAGTGAGGTGGCC-GAT-GAACAGTCTTGGT-CATGTGCCGCCA- 552
Query 545 TT-TATTTCAACGCCGGTATGTTGGTTTTTGAACCACATCTTGACACTTACGAGGATCTT 603
|| ||||||||||| ||||||||||| ||||||||| |||| ||||||||||||||||
Sbjct 553 TTGTATTTCAACGCGGGTATGTTGGTCTTTGAACCAAATCTCCTCACTTACGAGGATCTT 612
Query 604 CTTCGTGTTGTTCAAATCACCACTCCAACTTACTTT-GCCGAACAG 648
|||| ||||||| |||||||||| |||| | || |||||||||
Sbjct 613 CTTCAAACTGTTCAAGTCACCACTCCTACTT-CATTCGCCGAACAG 657
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49932742118
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5