BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492190

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G26230.1 | Symbols:  | Ribosomal protein L31e family protein...   671    0.0  


> AT4G26230.1 | Symbols:  | Ribosomal protein L31e family protein 
| chr4:13285825-13286791 FORWARD LENGTH=674
Length=674

 Score =  671 bits (363),  Expect = 0.0
 Identities = 417/443 (94%), Gaps = 4/443 (1%)
 Strand=Plus/Plus

Query  1    TCTCTGTCACCACCGGCTCTGTATTTCGGCGTTCGTGGAGAGACGAAGGTACAG-GA-AC  58
            |||| ||||||||||||||||||||||||| || ||||||||| ||||||| || || | 
Sbjct  3    TCTCCGTCACCACCGGCTCTGTATTTCGGCATTTGTGGAGAGAAGAAGGTAAAGAGAGA-  61

Query  59   ATATAAGAGACACAAAATGTCGGAGAAGAAGGGAAGGAAAGAAGAGGTGGTGACCAGAGA  118
            | || ||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  62   AGAT-AGAAACATAAAATGTCGGAGAAGAAGGGAAGGAAAGAGGAGGTGGTGACCAGAGA  120

Query  119  GTACACCATCAATCTCCACAGACGTCTTCATAGCTGTACCTTTAAGAAGAAGGCTCCAAA  178
            |||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct  121  GTACACCATCAACCTTCACAGACGCCTTCATAGCTGTACCTTTAAGAAGAAGGCTCCAAA  180

Query  179  TGCAATCAAGGAGATAAGGAAGTTTGCTGAGAAGGCAATGGGGACAAAGGATGTGAGAGT  238
             || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  181  GGCGATCAAGGAGATAAGGAAGTTTGCTGAGAAGGAAATGGGGACAAAGGATGTGAGAGT  240

Query  239  GGATGTCAAATTGAACAAGCAGATTTGGAGCAAAGGTATCAGAGGTCCTCCTAGGAGAAT  298
            |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  241  GGATGTTAAATTGAACAAGCAGATTTGGAGCAAAGGTATCAGAGGTCCTCCGAGGAGAAT  300

Query  299  CAGAGTCCGAGTTGCTCGTAAGAGAAACGATGACGAAGATGCAAAGGAAGAGTTCTTCTC  358
            ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct  301  CAGAGTCCGAGTTGCTCGTAAGAGAAATGATGATGAAGATGCAAAGGAAGAGTTCTTCTC  360

Query  359  TCTTGTCACTGTTGCTGAAATCCCTGCTGAAGGACTCTCTGGCCTTGGCACTAAGGTCAT  418
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct  361  TCTTGTCACTGTTGCTGAAATCCCTGCTGAAGGACTCTCTGGCCTCGGCACTAAGATCAT  420

Query  419  TGAAGAAGAGGATTGAACTATCT  441
            |||||||||||||| ||||||||
Sbjct  421  TGAAGAAGAGGATTAAACTATCT  443



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26372927175


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5