BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492192
Length=1575
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26200.1 | Symbols: ACS7, ATACS7 | 1-amino-cyclopropane-1-ca... 2527 0.0
AT4G11280.1 | Symbols: ACS6, ATACS6 | 1-aminocyclopropane-1-car... 82.4 1e-14
> AT4G26200.1 | Symbols: ACS7, ATACS7 | 1-amino-cyclopropane-1-carboxylate
synthase 7 | chr4:13275307-13277188 FORWARD LENGTH=1586
Length=1586
Score = 2527 bits (1368), Expect = 0.0
Identities = 1507/1576 (96%), Gaps = 2/1576 (0%)
Strand=Plus/Plus
Query 1 ATGGGTCTTCCTCTAATGATGGAGAGATCATCAAACAACAACGTTGTCGAGCTTTCTCGA 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGGTCTTCCTCTAATGATGGAGAGATCATCAAACAACAACAACGTCGAGCTTTCTCGA 60
Query 61 GTTGCGGTTTCAGACACTCACGGCGAAGACTCACCGTACTTCGCCGGCTGGAAAGCTTAC 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGGCGGTTTCAGACACTCACGGCGAAGACTCACCGTACTTCGCCGGCTGGAAAGCTTAC 120
Query 121 GATGAAAACCCTTACGACGAATCTCATAACCCTTCCGGTGTCATTCAAATGGGTCTCGCT 180
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GACGAAAATCCTTACGACGAATCTCATAACCCTTCCGGTGTCATCCAAATGGGTCTCGCT 180
Query 181 GAGAATCAGGTCTCGTTTGATCTTCTTGAAACTTACTTGGAGAAAAAGAATCCAGAAGGT 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 GAGAATCAGGTCTCGTTTGATCTTCTTGAAACTTACTTGGAGAAGAAGAATCCAGAAGGT 240
Query 241 TCGATGTGGGGATCAAAAGGAGCACCTGGGTTCCGTGAAAACGCACTGTTCCAAGACTAC 300
||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||
Sbjct 241 TCGATGTGGGGATCAAAAGGAGCTCCTGGGTTCCGTGAAAACGCATTGTTTCAAGACTAC 300
Query 301 CACGGTCTCAAAACTTTCAGACAAGCCATGGCTAGCTTCATGGAGCAGATTCGAGGAGGT 360
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 301 CACGGTCTCAAAACTTTCAGACAAGCCATGGCTAGTTTCATGGAACAGATTCGAGGAGGC 360
Query 361 AAAGCTAGATTCGATCCTGACCGGATCGTCCTCACCGCCGGAGCCACGGCCGCTAACGAA 420
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 AAAGCTAGATTTGATCCTGACCGGATCGTCCTCACCGCCGGAGCCACCGCCGCTAACGAA 420
Query 421 CTCTTAACTTTCATTCTCGCCGATCCTAACGACGCCCTTCTAGTTCCCACACCGTATTAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTCTTAACTTTCATTCTCGCCGATCCTAACGACGCCCTTCTAGTTCCCACACCGTATTAT 480
Query 481 CCAGGATTCGATAGAGATTTGAGATGGAGAACCGGAGTAAAAATAGTACCGATCCATTGC 540
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 481 CCAGGATTCGATAGAGATTTGAGATGGAGAACCGGAGTGAAAATAGTACCCATCCACTGC 540
Query 541 GACAGCTCGAACCATTTCGAGATAACCCCGGAGGCGCTTGAGTCGGCGTACCAGACAGCT 600
|||||||||||||||||| ||||||||||||||||||| |||||||||||||| || |||
Sbjct 541 GACAGCTCGAACCATTTCCAGATAACCCCGGAGGCGCTAGAGTCGGCGTACCAAACGGCT 600
Query 601 CGTGACGCGAACATTAGAGTCCGAGGAGTGCTCATAACCAACCCATCGAACCCATTAGGC 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGTGACGCGAACATTAGAGTCCGAGGAGTGCTCATAACCAACCCATCGAACCCATTAGGG 660
Query 661 GCGACGGTCCAAAAGAAGGTTCTAGAAGATCTCCTTGACTTCTGCGTACGCAAGAACATT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 GCGACGGTCCAAAAGAAGGTTCTAGAAGATCTCCTTGACTTCTGCGTACGCAAGAATATT 720
Query 721 CACTTGGTCTCAGACGAGATCTACTCCGGCTCCGTCTTCCATGCCTCCGAGTTCACCAGC 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 CACTTGGTCTCAGACGAGATCTACTCCGGCTCCGTCTTCCATGCCTCCGAGTTCACAAGC 780
Query 781 GTTGCCGAGATCGTAGAGAGCATCGATGACGTGTCAGTCAAGGAACGTGTCCACATCGTC 840
||||||||||||||||| | ||| |||||||||||||| |||||||| || |||||||||
Sbjct 781 GTTGCCGAGATCGTAGAAAACATAGATGACGTGTCAGTAAAGGAACGAGTTCACATCGTC 840
Query 841 TACAGTCTCTCCAAGGATCTTGGTCTTCCTGGTTTCCGCGTGGGAACTATATATTCGTAC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 TACAGTCTCTCCAAGGATCTTGGTCTTCCTGGTTTCCGCGTGGGAACTATATACTCGTAC 900
Query 901 AACGACAATGTTGTGCGGACAGCGAGAAGGATGTCGAGCTTCACGCTTGTCTCGTCTCAG 960
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AACGATAATGTTGTTCGGACAGCGAGAAGGATGTCGAGCTTCACGCTTGTCTCGTCTCAG 960
Query 961 ACACAACACATGTTGGCTTCTATGTTGTCGGATGAGGAATTTACGGACAAGTACATTAGG 1020
|||||||| ||| ||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 961 ACACAACATATGCTGGCTTCTATGTTGTCGGATGAGGAGTTTACGGAGAAGTACATTAGG 1020
Query 1021 ATAAACCGGGAAAGACTTAGAAGACGGTACGAGATCATTGTGGAAGGGCTTAAGAAGGCA 1080
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1021 ATAAACCGGGAAAGACTTAGAAGACGGTACGATACCATTGTGGAAGGGCTTAAGAAGGCA 1080
Query 1081 GGGATTGAGTGTTTGAAGGGGAACGCAGGGCTATTTTGTTGGATGAATTTGGGTTTCTTG 1140
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GGGATTGAGTGTTTGAAAGGGAACGCAGGGCTATTTTGTTGGATGAATTTGGGTTTCTTG 1140
Query 1141 CTGGAAAAGAAAACTAAAGACGGTGAGCTACAGCTTTGGGATGTGATCTTGAAGGAGCTG 1200
|| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1141 CTCGAAAAGAAAACTAAAGACGGCGAGCTCCAGCTTTGGGATGTGATCTTAAAGGAGCTG 1200
Query 1201 AAGCTGAATATATCTCCTGGAACTTCGTGTCACTGCTCGGAGGTCGGATGGTTTAGGGTT 1260
|| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1201 AACCTGAATATATCTCCGGGATCTTCGTGCCACTGCTCGGAGGTCGGATGGTTTAGGGTT 1260
Query 1261 TGTTTTGCTAATATGAGTGAAAACACTTTGGAGATTGCGTTGAAGAGAATACATGAGTTC 1320
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 TGTTTTGCTAATATGAGTGAGAACACTTTGGAGATTGCGTTGAAGAGAATACATGAGTTC 1320
Query 1321 ATGGACCGACGAAGGAGGTTTTGAAATGaaaaaaaaaaaaGTAAAGTAAATCCCtttttt 1380
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1321 ATGGACCGACGAAGGAGGTTTTGAAATGTTAAAAAAAAAAGTAAAGTAAATCCGTTTTTT 1380
Query 1381 tGGTGGTTAA-TATATGGGGGAGGGAAAATTAATTTTTTAGGAAGGAGAAGATGATTAAT 1439
|||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 1381 TGGTGGTTAAATATATGGGGGAGGGGTAATTAATTTTTTAGGAAAGAGAAGATAATTAAT 1440
Query 1440 TGAAAATCATTGATGAAAAATGGGTTTTGATTTGTTTCTCTTTTCTAGATATTATTGTTT 1499
| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 TTAAACCCATTGATGTAAAATGGGTTTTGATTTGTTTCTCTTTTCTAGATATTATTGTTT 1500
Query 1500 GTTTTCTTGCTTTGGACGAAGCAAGTTAATTTCATACTCATCAAGGTTGATCTGTAATAT 1559
|||||||||||| |||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1501 GTTTTCTTGCTT-GGACAAAGCAAGTTAATTTCATGTTCATCAAGGTTGATTTGTAATAT 1559
Query 1560 TTGTTGTTATAAACGA 1575
|| |||||||||||||
Sbjct 1560 TTATTGTTATAAACGA 1575
> AT4G11280.1 | Symbols: ACS6, ATACS6 | 1-aminocyclopropane-1-carboxylic
acid (acc) synthase 6 | chr4:6864097-6866116 FORWARD
LENGTH=1753
Length=1753
Score = 82.4 bits (44), Expect = 1e-14
Identities = 65/75 (87%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 458 TTC-TAGTTCCCACACCGTATTATCCAGGATTCGATAGAGATTTGAGATGGAGAACCGGA 516
||| ||||||| || || ||||||||||| || |||||||||||||||||||||||||||
Sbjct 516 TTCTTAGTTCCAACCCCTTATTATCCAGGGTTTGATAGAGATTTGAGATGGAGAACCGGA 575
Query 517 GTAAAAATAGTACCG 531
|| || | ||||||
Sbjct 576 GTGAATCTTGTACCG 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77760644205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5