BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492193
Length=3331
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26190.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 3258 0.0
> AT4G26190.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr4:13262236-13266966 REVERSE
LENGTH=3520
Length=3520
Score = 3258 bits (1764), Expect = 0.0
Identities = 2376/2661 (89%), Gaps = 84/2661 (3%)
Strand=Plus/Plus
Query 1 ATGGAGAGTGTTCCAGTGGAAACACTTTCAGAAACTGG---------TGACTGTCAGACA 51
|||||||||||| ||||||||||||||||||||||||| |||| |||| ||
Sbjct 110 ATGGAGAGTGTTTCAGTGGAAACACTTTCAGAAACTGGAAACTCAAATGACGGTCAAACG 169
Query 52 AATCCAGAATTGAGTGATAAGCagaagaagagatcggggaaaaagaagagaaaatcgagg 111
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 170 AATCCAGAATTGATTGATAAGCATAAGAAGAGATCGGGGAAAAAGAAGAGAAAATCGAGG 229
Query 112 aaaccgga-agatgagttgaagaaTAATGATTCTCATATCAGTAGCCAAATTGGGAACGC 170
|||| ||| | ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 230 AAACTGGATA-ATGAGGTGAAGGATAATGATTCTCATATCAGTAGCCAAATTGGGAACGC 288
Query 171 AGATGAGGCCTTTTCATCTC--------------------AA-GAGAAATCCACCATTG- 208
|||||||||||||||||||| || ||||||||||| | ||
Sbjct 289 AGATGAGGCCTTTTCATCTCAAGAAAAAAAAGAAGGGGAAAATGAGAAATCCACTAGTGA 348
Query 209 AAGATCAAGTCCAGTTATCCGAGAATCTTTTGTCTTCATTACCTGCAGAGTCCTGTCAAC 268
||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 AAG-TCAAGTTCGGTTATCCGAGAATCTTTTGTCTTCATTACCTGCAGAGTCCTGTCAAC 407
Query 269 GAGATTCAATCTCATGTGAAGAGCCTGGAGCTACTTTACATCATAAAGACCCAATCTCAT 328
|||||||| ||||||||||||||||| ||||||| ||||||||| ||||||||||||||
Sbjct 408 GAGATTCAGTCTCATGTGAAGAGCCTAGAGCTACACTACATCATACAGACCCAATCTCAT 467
Query 329 GTGAAGATTCACTATCAGATGCTAATAGGAAGGGTTCCAGTAGaaaaaaatcaaaaaGGA 388
|||||||||| ||| |||||| ||||||||||||||| |||| |||||||||||||||||
Sbjct 468 GTGAAGATTCTCTACCAGATGATAATAGGAAGGGTTCTAGTACAAAAAAATCAAAAAGGA 527
Query 389 GAGAGAAGAAGAAGAC-AAAGGACG-CTT--CCTGTGACGAGAAAATGTTGGATGATGCA 444
||||||||||||||| |||| | | ||| ||||||| |||||| |||||||||| |
Sbjct 528 GAGAGAAGAAGAAGAAGAAAG-AGGACTTGTCCTGTGAAGAGAAATTGTTGGATGAAGTT 586
Query 445 CAAAAAATCACCAACGAAGACCAAGTTCATCCACTCAACAATCCTTTGTCAAACGGTATA 504
|||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 587 GAAAAAATCACCAGCGAAGACCAAGTGCATCCACCCAACAATCCTTTGTCAAACGGTATG 646
Query 505 ATACAAGAA-GGTTCACATGAAC-ACACTCAGGATTCATGTGAGAAGCCTGGAGCGGCAC 562
|||||||| ||| || ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 647 GTACAAGAAAGGT-CAGGTGAACTA-ACTCAGGATTCATGTGAGAAGCCTGGAGCGGCAC 704
Query 563 AACTTTGTACAGATTCAAATCTGTCAACCTGGGAAGATTCACAGCCAGATGCTACTAATA 622
|| |||||||||| |||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 705 AAATTTGTACAGACCCAAATCTGTCAACCTGCAAAGATTCACTGCCAGATGCTACTAATA 764
Query 623 TGACTAGTTCCCCGaaaaaaaagagaaaaaaGAAG-AGGGGTAGAAACGCACTGAAGGAA 681
||||||||||| |||||| ||||||||| || ||| |||| |||||| | |||||| |||
Sbjct 765 TGACTAGTTCCTCGAAAAGAAAGAGAAACAA-AAGGAGGGATAGAAATGTACTGAAAGAA 823
Query 682 ACTGGTGTTGATACAAATA-CTACCAATGCAGAGGTTGCTGTAAAAT-ACAATACTATTA 739
| ||||||||||| || | |||||||||||||||||||||| | ||||||||| ||
Sbjct 824 AGTGGTGTTGATATTGGTAGC-ACCAATGCAGAGGTTGCTGTAAC-TGACAATACTACTA 881
Query 740 CTGAAGCTGAAGGATCAAGATCGATGAGTATAGAGGAAAACTCCATTACAAGTGTTTTGA 799
|||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 882 CTGAAGCTGAAGGATCAAGATCGATGAGTATAGAGGAAAACTCCGTTGCTAGTGTTTTGA 941
Query 800 TAAATAGTTGTCCGAAATCCAAGGTTGATACTGGGGAACAACTAGAGGGCA-ACGACGT- 857
||||| |||||| |||||||||||||||||| | |||||||||||| |||| | || ||
Sbjct 942 TAAATGGTTGTCTGAAATCCAAGGTTGATACAGTGGAACAACTAGATGGCACA-GATGTT 1000
Query 858 CAAAATCAATGAAACTGTGTCCCAAACTGAGAGTCCTAAAGCCAAGAAAAGGAAGAAGAA 917
|||| ||||||||||||| | ||||||| ||||| |||||||||||||||||||||||||
Sbjct 1001 CAAA-TCAATGAAACTGTCTTCCAAACTCAGAGTACTAAAGCCAAGAAAAGGAAGAAGAA 1059
Query 918 AAAGACCAAAACAATGGATGTCTGTGA-CCAATTAGGAAATACTCTGCCAACCTCCACGA 976
||| |||||||||||||| | |||||| ||| ||||||||||||||||| |||||||||
Sbjct 1060 AAAAACCAAAACAATGGAGGCCTGTGATCCA-TTAGGAAATACTCTGCCGACCTCCACGG 1118
Query 977 AAAGCGGGCCAGTAGAGTGTGTGGAAAATAATGATGGGAATAAGGAAACAGATGGAACCA 1036
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1119 AAAGCGGGCCAGTAGAGTGTGTGGAAAATAATGATGGGAATAAGGAAAAAGATGGAAACA 1178
Query 1037 CTGAAGTTAAAGAGGACGTTCTTGAAGTTAAATACGATATTATTTCTGAAGCTGAAGGAT 1096
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1179 CTGAAGTTAAAGAGGACGTTCGTGAAGTTAAATACGATACTATTTCTGAAGCTGAAGGAT 1238
Query 1097 CAAGATCGATGACTAAAGAGGAAAAATCCGCTGCTAGTGTTTTGATAAATAGTTGTCCGA 1156
||| ||||| |||||||||||||||||| | |||||||||| |||||| |||||||| ||
Sbjct 1239 CAAAATCGACGACTAAAGAGGAAAAATCTGTTGCTAGTGTTGTGATAAGTAGTTGTCTGA 1298
Query 1157 AATCCAAGGATGATACAGTGGAACAACAAGAGTGCACAGATGTCAA-ACTCAATGAAACT 1215
|||||||||||||||||||||||||| ||||||||||||||||||| | ||| |||||||
Sbjct 1299 AATCCAAGGATGATACAGTGGAACAAAAAGAGTGCACAGATGTCAACA-TCAGTGAAACT 1357
Query 1216 GTGGTCCAAATTCAGAATCCTAAAGCCAAGAGAAGGAAGAAGAGAAAGACTAAAACATTG 1275
|||| ||||| |||| ||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1358 GTGGCCCAAACTCAGGATCCTAAAGCCAAGAGAAGAAAGAAGAGAAAGACCGAAACAATA 1417
Query 1276 GAGGACTGTGACCCGTTAGGAAATACTTTGTCAACCTCCACGAAAAGCGGGCCAGTAGAG 1335
|||| |||||||| ||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1418 GAGGTGTGTGACCCATTAGGAAATACTTTGTCTACCTCCATGAAAAGCGGGCCAGTAGAG 1477
Query 1336 TGTGTGGAAAATAATGATGGGAATGGTGGCCGAGAGTTAATTAGTTATTTAGCAAGTCAG 1395
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1478 CGTGTGGAAAATAATGATGGGAATGGTGGCCGAGAGTTAATTAGTTATTCGGCAAGTCAG 1537
Query 1396 AAGGAAAATTCTGTAACTGGGGAGGAAAATGGTTTTCAGAATCTTGGAAAAACTAAAAAG 1455
| |||||||| ||||| |||||||||||| ||| |||||||||| |||||||||||| ||
Sbjct 1538 ACGGAAAATTATGTAAATGGGGAGGAAAACGGTATTCAGAATCTCGGAAAAACTAAAGAG 1597
Query 1456 AAGGAAACAGATGAAAACACTGAAGTCAAAGAGGACGTTCTTGGAGCAGGTATATGTGAT 1515
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1598 AAGGAAACAGATGAAAACACTGAAGTTAAAGAGGACGTTCTTGGAGCAGGTGTATGTGAT 1657
Query 1516 GTAAGTAGCAAAAAACGGAAGAGAAAGAAGAA-AACATCATCTGCAGATCACAAAACTGG 1574
||||| ||||||||||||||| |||||||||| || | | | | || || ||
Sbjct 1658 GTAAGGAGCAAAAAACGGAAGGGAAAGAAGAAGAAAA-C-T-T-CA--TC-------TGC 1704
Query 1575 AGATATGGAGGTCTGTGAGCCATCAGGATCAGTAGAGTGTTTGTTGGATCATTCAAACGA 1634
|||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1705 AGATATGGAGGTCTTTGAGCCATCAGGATCAGTAGAGTGTTTGTTGAATCAGTCAAACGA 1764
Query 1635 AAAAGTCATGCAAAATTGTGATGAGAATGCCGGAAAAGAGTTTGGGGGAGAGGATAAGAC 1694
||||| ||||||||||| ||||| |||||| ||| ||||||| ||||||||||||| |||
Sbjct 1765 AAAAGACATGCAAAATTTTGATGGGAATGCTGGACAAGAGTTCGGGGGAGAGGATATGAC 1824
Query 1695 AAGTAAAATTGCAGAACCTGCAACGGGAGAGAAAAGCGAAGTTCAGAAATCTGGAAAACG 1754
|| |||||||| | || |||||||| |||||||||| | |||||||||||||||||||||
Sbjct 1825 AATTAAAATTGAAAAATCTGCAACGAGAGAGAAAAGTGGAGTTCAGAAATCTGGAAAACG 1884
Query 1755 TAAAGAAATGACAAAAGATGGAAATATTGAATCTAATCAGGATGCACTTGGA-GCAGAAG 1813
||||||||||||||||||| ||||||||||||||||||||||||||| | | |||||||
Sbjct 1885 TAAAGAAATGACAAAAGATAAAAATATTGAATCTAATCAGGATGCACTCG-ACGCAGAAG 1943
Query 1814 ATGTTAGTGATGTTGGGGGCAAAAGACAGAAGAGGAAGATGAAGAAGAAAACATATTGCG 1873
||||||||||| ||| ||||||| ||||||||||||| || || |||||| | ||||
Sbjct 1944 GTGTTAGTGATGATGGTCACAAAAGAGAGAAGAGGAAGATAAAAAACAAAACAAACTGCG 2003
Query 1874 AATCAGTAGCCACCATGGATAGCGAGTCAGTACAGTGTTTGTTGCATCAATC-AAGTAGA 1932
||||||| |||||||||||||| ||||||||||||| ||||||| ||||||| || | ||
Sbjct 2004 AATCAGTTGCCACCATGGATAGTGAGTCAGTACAGTCTTTGTTGTATCAATCGAA-TGGA 2062
Query 1933 GAAGGTGTGAAAAGTTGTGATGGGAATGCTGATGGGGAGATTGCCAGTAAGGATTTGGCT 1992
||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2063 GAAGGTGTGAAAAATTATGAAGGGAATGCTGATGGGGAGATTGCCAGTAAGGATTTGGCT 2122
Query 1993 AGTAACATTGAAGATTCTGCAAGTAAGGGGGAAAGTGTTCA-GAGTGTTaaaaataccaa 2051
|||||||||||||||||||||| |||||||||||| ||||| || || ||||||||||||
Sbjct 2123 AGTAACATTGAAGATTCTGCAACTAAGGGGGAAAGCGTTCAAGA-TGATAAAAATACCAA 2181
Query 2052 aaaaaagaaaaatgataaaaagggaaaaGTTGATCAGGATGCCTTGGGGGCAGAAGGTGT 2111
||||| |||||| |||| ||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 2182 AAAAAGGAAAAAGGATAGAAAGGGAGAAGTTGATCAGGATGCCAAGGGAGCAGAAGGTGT 2241
Query 2112 TAGTAAGGTTGAGGTCACAACAAAGAAAAGCAAGAAGAAGCAAAATTCGTTAGATCATAA 2171
||||| ||||||||| |||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 2242 TAGTACGGTTGAGGTGACAACAAAGAAAAGCAAGAAGAAGAAAAATTTGTTAGATCATAA 2301
Query 2172 AACTGACAATATGGAGGAGGACAGTCA-AAAGGAAAATGAGAATAAGGGAGAAGTTGATC 2230
||||||||||||||||||||| ||| | |||| ||||||| || |||| |||||||||||
Sbjct 2302 AACTGACAATATGGAGGAGGATAGT-ATAAAGAAAAATGAAAAAAAGGAAGAAGTTGATC 2360
Query 2231 AGAATTCTTTGGGAGCAGAAGGTGTTAGCAAGGTTGAGGTCAAAACAAAGGAGAGCAAGA 2290
||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2361 AGAATGATTTGGGAGCAGAAGGTGTTAGCAAGGTTGAGGTCAAAACAAAGAAGAGCAAGA 2420
Query 2291 GGAAGAAAAATTCTTTAGATCATAAAACTGATGATATGGAGGAGAAGGATGATGTTTCCT 2350
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 2421 GGAAAAAAAATTCTTTAGATCATAAAACTGATGATATGGAGGGGAAGGATGATGTTTCAT 2480
Query 2351 TACCTAGTAAAGATGCAGAACCAGAATTTGATAGGGAAAAGCTTGAAACGTCTTTGTCAA 2410
||||||| ||||||| ||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2481 TACCTAGGAAAGATGAAGAACCAGAATTTGACAGGGAAAAGCTTGAAACGTCATTGTCAA 2540
Query 2411 GTTCTGTCTTAATACAAAATAAT---GTGGCTCAAGGAGTTGCTTCATCACAAACTGGAG 2467
|||||||||||||||||||| || || |||||||||||| ||||||| |||||||||
Sbjct 2541 GTTCTGTCTTAATACAAAATGATAACGTAGCTCAAGGAGTTATTTCATCAGAAACTGGAG 2600
Query 2468 ATGTACCTAGATGCTCATGTGCAGGTCAACATACCAGAAAGTTGCTTGTATTTGATTTGA 2527
|||||||||||||| ||||| || ||||| ||||||||||||| || |||||||||| |
Sbjct 2601 ATGTACCTAGATGCACATGTAAAGCTCAACGTACCAGAAAGTTGGTTATATTTGATTTAA 2660
Query 2528 ATGGAATCCTTGCAGATATTGTTCAGGGTTTTACAGGTCCATT-CGTTCCAGATGGTAAA 2586
|||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct 2661 ATGGAATCCTTGCAGATATTGTTCAGGGTTTTACAGGTACATTTC-TTCCAGATGGTAAA 2719
Query 2587 GTATCATACAGATCAGTTTTC 2607
||||||||||||||||| |||
Sbjct 2720 GTATCATACAGATCAGTCTTC 2740
Score = 699 bits (378), Expect = 0.0
Identities = 449/484 (93%), Gaps = 2/484 (0%)
Strand=Plus/Plus
Query 2720 TTGGGTTGGATTATATGGTGAGCATTGTCATGAAAAACTATTCGAGGAATCTGTTGTTCT 2779
||||||||||||||||| | | |||||||||||||||| || ||||||||||||||||||
Sbjct 2817 TTGGGTTGGATTATATGATCAACATTGTCATGAAAAACCATGCGAGGAATCTGTTGTTCT 2876
Query 2780 GTTTTGACCAGAACA-AGTGCACTACAACGAAGTTTAAAACTCAGGAGAAGAACGATAAA 2838
||||||| ||||| | | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2877 GTTTTGATCAGAATATA-TGCACTACAACGAAGTTTAAAACTCAGGAGAAGAAGGATAAA 2935
Query 2839 CCTCTGTTCCTCAAGGATCTACGAACAGTATGGGACGGTTTTGGGACATGCACCAGTTGT 2898
||| ||||||||||||| ||||||| |||||||||| | |||||||||||| |||||||
Sbjct 2936 CCTTTGTTCCTCAAGGACCTACGAAGAGTATGGGACCATATTGGGACATGCATCAGTTGT 2995
Query 2899 GGAAAGCGAAAGTACGATGAGACAAATACTTTATTAGTTGACGATTCTCCCGACAAGGCC 2958
|||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct 2996 GGAAAGCGAAAGTATGATGAGACAAACACTTTGCTAGTTGACGATTCACCCGACAAGGCC 3055
Query 2959 TTGTGTAATCCTCCACACACTGGAATCTTCCCTTCCCCGTACCAGTACACAGACCGTCAA 3018
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 3056 TTGTGTAATCCTCCACACACTGGAATCTTCCCTAGCCCGTACCAGTACACAAACCGTCAA 3115
Query 3019 GATTCTGCATTGGGACGTGAGGGTGAGCTAAGGAAGTATCTTGAAAGATTAGCAGATGCA 3078
|||||||||||||| | |||||||||||||||||||||||| ||||||||||| |||||
Sbjct 3116 GATTCTGCATTGGGGCCTGAGGGTGAGCTAAGGAAGTATCTAGAAAGATTAGCGGATGCG 3175
Query 3079 GAGAACGTTCAGAAGTTTGTAGCGGAGAATCCATTCGGTCAGACTGCCATAACTGAGACA 3138
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3176 GAGAACGTTCAGAAGTTTGTAGCGGAGAATCCATTCGGTCAAACTGCCATAACTGAGACA 3235
Query 3139 CACGAGTCATGGGAGTTTTACTCTAAGGTCGTCGAGGCATATAAGTAATTCCTCCACAGG 3198
|||||||||||||||||||||||||||| |||||| ||| |||||||||||||| |||||
Sbjct 3236 CACGAGTCATGGGAGTTTTACTCTAAGGCCGTCGAAGCACATAAGTAATTCCTCAACAGG 3295
Query 3199 AGTT 3202
||||
Sbjct 3296 AGTT 3299
Score = 353 bits (191), Expect = 5e-96
Identities = 251/280 (90%), Gaps = 4/280 (1%)
Strand=Plus/Plus
Query 1082 CTGAAGCTGAAGGATCAAGATCGATGACTAAAGAGGAAAAATCCGCTGCTAGTGTTTTGA 1141
||||||||||||||||||||||||||| || ||||||||| |||| ||||||||||||||
Sbjct 882 CTGAAGCTGAAGGATCAAGATCGATGAGTATAGAGGAAAACTCCGTTGCTAGTGTTTTGA 941
Query 1142 TAAATAGTTGTCCGAAATCCAAGGATGATACAGTGGAACAACAAGAGT-GCACAGATG-T 1199
||||| |||||| ||||||||||| ||||||||||||||||| ||| | ||||||||| |
Sbjct 942 TAAATGGTTGTCTGAAATCCAAGGTTGATACAGTGGAACAACTAGA-TGGCACAGATGTT 1000
Query 1200 CAAACTCAATGAAACTGTGGTCCAAATTCAGAATCCTAAAGCCAAGAGAAGGAAGAAGAG 1259
|||| ||||||||||||| |||||| ||||| | |||||||||||| |||||||||||
Sbjct 1001 CAAA-TCAATGAAACTGTCTTCCAAACTCAGAGTACTAAAGCCAAGAAAAGGAAGAAGAA 1059
Query 1260 AAAGACTAAAACATTGGAGGACTGTGACCCGTTAGGAAATACTTTGTCAACCTCCACGAA 1319
||| || |||||| |||||| |||||| || |||||||||||| || | ||||||||| |
Sbjct 1060 AAAAACCAAAACAATGGAGGCCTGTGATCCATTAGGAAATACTCTGCCGACCTCCACGGA 1119
Query 1320 AAGCGGGCCAGTAGAGTGTGTGGAAAATAATGATGGGAAT 1359
||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 AAGCGGGCCAGTAGAGTGTGTGGAAAATAATGATGGGAAT 1159
Score = 93.5 bits (50), Expect = 1e-17
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 2601 AGTTTTCTCGACTTTTGCTTTGAGAGATTTCATGTTGCGATATGGTCCTCCAGACG 2656
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 2759 AGTTTTCTCGACTTTTGCTTTGAGAGATTTGATGTTGCGATATGGTCTTCCAGACG 2814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 165751579672
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5