BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492194
Length=1247
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26180.1 | Symbols: | Mitochondrial substrate carrier famil... 1836 0.0
> AT4G26180.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr4:13260061-13262035 REVERSE LENGTH=1328
Length=1328
Score = 1836 bits (994), Expect = 0.0
Identities = 1167/1250 (93%), Gaps = 14/1250 (1%)
Strand=Plus/Plus
Query 1 TTTTTCGCTCTCTCAATTTTATTttcttcttcttcttcttcttcctccagcttcagcttc 60
||||||||||||||||||||| | ||||||||||||||||||| || || ||||||
Sbjct 8 TTTTTCGCTCTCTCAATTTTA--AT-ATCTTCTTCTTCTTCTTCCTTCA--TTGAGCTTC 62
Query 61 agcttcAAGTGTACAAAGACAGGTAAAAGGAGGAGAAGAAGAAGATCCATTAAACCGTAT 120
|||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 63 AGCTTCAACTGTACAAAGATTGGT-AAA--AGGAGAAGAAGAAGATCCATTAAACCGTAT 119
Query 121 CTATCTTTTCTCTCTCCACCTCTATTTCGATGGCGGAGGGCGAAGAGAAGATCGGAATTA 180
||||||||||||||||||| |||||||| ||||||||||| |||||||||| ||||||||
Sbjct 120 CTATCTTTTCTCTCTCCACTTCTATTTCCATGGCGGAGGGTGAAGAGAAGAACGGAATTA 179
Query 181 TTGATTCGATGCCTTTGTTCGCTAAGGAGCTTATTGCCGGCGGCGTCACCGGCGGTATTG 240
|||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||| |
Sbjct 180 TTGATTCGATTCCTTTATTCGCTAAGGAGCTTATTGCCGGCGGCGTCACGGGTGGTATAG 239
Query 241 CTAAAACCGCCGTTGCTCCACTCGAGCGAATTAAGATTCTTTTCCAGACCAGAAGGGACG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 240 CTAAAACCGCCGTTGCTCCACTCGAGCGAATTAAGATTCTTTTCCAGACCAGAAGGGATG 299
Query 301 AGTTTAAAAGGATAGGACTTGTTGGATCAATCAACAAGATTGGCAAAACTGAAGGTTTGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGTTTAAAAGGATAGGACTTGTTGGATCAATCAACAAGATTGGCAAAACTGAAGGTTTGA 359
Query 361 TGGGTTTCTACCGAGGGAATGGTGCAAGTGTTGCTCGGATAGTTCCCTATGCAGCGCTTC 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 360 TGGGTTTCTACAGAGGGAATGGTGCAAGTGTTGCTCGGATAGTTCCCTATGCAGCTCTTC 419
Query 421 ATTATATGGCTTATGAGGAATACAGGAGATGGATCATCTTCGCTTTCCCCGACACTACTC 480
|||| ||||||||||||||||||||||||||||| ||||| | |||||| ||||||||||
Sbjct 420 ATTACATGGCTTATGAGGAATACAGGAGATGGATTATCTTTGGTTTCCCAGACACTACTC 479
Query 481 GAGGCCC-TCTACTTGATCTTGTAGCTGGATCATTTGCTGGTGGTACTGCGGTTCTCTTC 539
||||||| | | |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 480 GAGGCCCAT-TGCTTGATCTCGTAGCTGGATCATTTGCTGGTGGTACTGCGGTTCTCTTC 538
Query 540 ACCTATCCTCTTGACCTGGTCCGGACAAAGCTCGCTTATCAGGCGCAGGTAAAATCTTTT 599
|||||||||||||||||||||||||| ||||||||||||||| |||| |||||| || ||
Sbjct 539 ACCTATCCTCTTGACCTGGTCCGGACTAAGCTCGCTTATCAGACGCAAGTAAAAGCTATT 598
Query 600 CCCATGGAACAAATCGTTTACAGAGGAATTACCGATTGTTTCTCGAGGACATACAGAGAA 659
||| ||||||||||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct 599 CCCGTGGAACAAATCATATACAGAGGAATTGTAGATTGTTTCTCGAGGACATACAGAGAA 658
Query 660 TCTGGATTCCGTGGCCTATATCGTGGTGTAGCTCCTTCTCTGTATGGGATCTTCCCTTAT 719
|||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 659 TCTGGAGCCCGAGGCCTATATCGTGGTGTAGCTCCTTCTCTCTATGGGATCTTCCCTTAT 718
Query 720 GCTGGTTTGAAGTTCTACTTCTACGAGGAAATGAAACGCCATGTCCCACCTGAACATAAG 779
||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||
Sbjct 719 GCTGGTTTGAAGTTCTACTTCTACGAGGAGATGAAACGTCATGTCCCTCCGGAACATAAG 778
Query 780 AAAGACATTTCCCTGAAACTCGTTTGTGGGTCGGTCGCTGGATTGCTTGGTCAGACCTTA 839
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 779 CAAGACATTTCCCTGAAACTCGTTTGTGGGTCAGTCGCTGGATTGCTTGGTCAGACTTTA 838
Query 840 ACATACCCTCTGGATGTAGTCAGGAGACAAATGCAGGTTGAGAGACTATATTCAGCCGTT 899
||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 839 ACATACCCTCTCGATGTTGTCCGGAGACAAATGCAGGTTGAGAGACTATATTCAGCCGTT 898
Query 900 AAGGAAGAAACAAGAAGAGGAACAATGCAAACCCTTTTCAAGATTGCAAGAGAAGAAGGT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAGGAAGAAACAAGAAGAGGAACAATGCAAACCCTTTTCAAGATTGCAAGAGAAGAAGGT 958
Query 960 TGGAAGCAACTCTTCTCGGGGCTTAGCATCAATTACCTTAAGGTTGTGCCTTCCGTCGCA 1019
||||||||||||||||| ||||||||||||||||||||||||||||| || || || |||
Sbjct 959 TGGAAGCAACTCTTCTCAGGGCTTAGCATCAATTACCTTAAGGTTGTACCGTCTGTGGCA 1018
Query 1020 ATCGGCTTCACAGTGTATGATATTATGAAGCTGCACTTAAGAGTCCCGCCGCGAGAGGAA 1079
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1019 ATCGGATTCACAGTGTATGATATTATGAAGCTGCACTTAAGAGTCCCGCCTCGAGAGGAA 1078
Query 1080 CCTGAGGCAGAAGCTGTGACAACACAGAAAA-GGAAAGTTTTCACCTAATTCTAAGATCA 1138
|||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||||||
Sbjct 1079 CCTGAGGCAGAAGCTGTGACGACAC-GAAAAAGGAAAGTTTTCACCTAATACTAAGATCA 1137
Query 1139 TC-ATATGATCTGATTTTTTGTGGTGTTTAAAACCACAGATTATTATAAGAGATTGTACA 1197
| ||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1138 ACCATATGATCTGATTCTTTGTGGTGTTTAAAACCACATATTATTATACTAGATTGTACA 1197
Query 1198 TTCCAtttttttCGTAGAGGAAATTGAAGCTAACATTCCTCCAAATAAAC 1247
||||||||||| |||||||||| ||||||||||| ||||||| ||||||
Sbjct 1198 TTCCATTTTTTG-GTAGAGGAAACTGAAGCTAACACTCCTCCATATAAAC 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61294865445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5