BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492196
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26160.1 | Symbols: ACHT1 | atypical CYS HIS rich thioredox... 1160 0.0
AT4G29670.2 | Symbols: ACHT2 | atypical CYS HIS rich thioredox... 207 1e-52
> AT4G26160.1 | Symbols: ACHT1 | atypical CYS HIS rich thioredoxin
1 | chr4:13255251-13256760 FORWARD LENGTH=839
Length=839
Score = 1160 bits (628), Expect = 0.0
Identities = 743/796 (93%), Gaps = 18/796 (2%)
Strand=Plus/Plus
Query 1 AACAGAACAAAC-AAAA---ATGTCTCCGACGACGACATCGTTACGATCCCTAAGCTTCT 56
|||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 26 AACAAAACAAACAAAAAGTCATGTCTCCGACGACGACATCGTTACGATCCCTAAGCTTCT 85
Query 57 CGCTTTACGCTTCTTCTAATTCTAATCCGAGTCCTTCACCAATTGAGATCCGACAGTTAC 116
|||||||||||||||||||||||| ||||| | || ||||||||||| |||||||||||
Sbjct 86 CGCTTTACGCTTCTTCTAATTCTACTCCGATTTCTACACCAATTGAGGCCCGACAGTTAC 145
Query 117 TGAGTTCAAGCAATAGATTCTACGGTCTG------T----C-C-TCTTCCTCCCTTACTA 164
|||||||| |||||||||||||||||||| | | | ||||||||||||||||
Sbjct 146 TGAGTTCATGCAATAGATTCTACGGTCTGTCCTCTTCGAGCTCTTCTTCCTCCCTTACTA 205
Query 165 CTTCTTCTTCGATCGGAAATCTAGTTTTCTCATCAAGGAATCAGTTTCTCTCCGTAAAGG 224
|||| |||| |||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 206 CTTCATCTTTGATCGGAAATCTTGTTTTCTCATCAAGGAATCAGTCTCTCTCCGTAAAGG 265
Query 225 TCCAAGCGTTAGCTGCTGAAACCGAACAGCCAAAATGGTGGGAGAGGAAAGCAGGGCCAA 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 TCCAAGCGTTAGCTGCTGAAACCGAACAGCCAAAATGGTGGGAGAGGAAAGCAGGGCCAA 325
Query 285 ACATGGTTGACATTACCTCAACTGAGCAGTTTCTGAACGCGTTAAAAGATGCAGGAGATA 344
||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |||||||
Sbjct 326 ACATGATTGACATTACCTCAGCTGAGCAGTTTCTCAACGCGTTAAAAGATGCGGGAGATA 385
Query 345 GATTAGTTATCGTGGATTTTTATGGAACTTGGTGTGGTTCTTGCCGTGCAATGTTCCCAA 404
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 386 GATTAGTTATCGTAGATTTTTACGGAACTTGGTGTGGTTCTTGCCGTGCAATGTTCCCAA 445
Query 405 AGCTTTGCAAAACAGCGAAAGAACACCCTGAA-ATCTTGTTCCTTAAAGTAAACTTTGAT 463
|||| |||||||| ||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 446 AGCTCTGCAAAACGGCGAAAGAACACCCT-AACATCTTGTTCCTTAAAGTAAACTTTGAC 504
Query 464 GAGAACAAGTCTCTCTGCAAAAGCTTAAACGTCAAGGTGTTACCATACTTCCACTTCTAC 523
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 505 GAGAACAAGTCTCTCTGCAAAAGCTTAAACGTCAAGGTGTTACCGTATTTCCACTTCTAC 564
Query 524 CGCGGTGCTGATGGCCAAGTCGAATCCTTCTCATGCTCTCTTGCCAAGTTCCAGAAACTG 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 CGCGGTGCTGATGGCCAAGTCGAATCCTTCTCATGCTCTCTTGCCAAGTTCCAGAAACTG 624
Query 584 AGAGAGGCGATAGAGAGACACAATGTAGGAAGTTTCAGTGACATCTCTTCTTCAGCTTCT 643
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 625 AGAGAGGCGATAGAGAGACACAATGTAGGAAGTATCAGTAACATCTCTTCTTCAGCTTCT 684
Query 644 GAGAAAGTTGAAGATTCAAGTGAATAATCAATGTCTGGTTCTGATTGATCAAAGATTCTT 703
||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||
Sbjct 685 GAGAAAGTTGAAGATTCAAGTGAATAATCAATGCCTGGTTCAGATTGATCACAGATTATT 744
Query 704 TTGTTAAATCGCTTCCTTGTATATATGTTGACTGCATTTTGCATATGGTGCATTATAATT 763
|||||||||||||||| ||||||||||||||||||||||| ||| |||||||| ||||||
Sbjct 745 TTGTTAAATCGCTTCCCTGTATATATGTTGACTGCATTTTCCATGTGGTGCATCATAATT 804
Query 764 TTTGTATATaaaaaaa 779
|||||| ||||| |||
Sbjct 805 TTTGTACATAAATAAA 820
> AT4G29670.2 | Symbols: ACHT2 | atypical CYS HIS rich thioredoxin
2 | chr4:14535607-14537250 REVERSE LENGTH=1229
Length=1229
Score = 207 bits (112), Expect = 1e-52
Identities = 255/322 (79%), Gaps = 17/322 (5%)
Strand=Plus/Plus
Query 257 AAATGGTGGGAGAGGAAAGCAGGGCCAAACATGGTTGACATTAC-CTCAACTG-AGCAGT 314
||||||||||||||||| || ||||||||||| || ||| | || |||| || ||
Sbjct 428 AAATGGTGGGAGAGGAATGC---TCCAAACATGGTCGATATT-CATTCTACTGAAG-AG- 481
Query 315 TTC-TGAACGCGTTAAAAGATGCAGGAGATAGATTAGTTATCGTGGATTTTTATGGAACT 373
||| ||| ||| |||| | ||| || || ||||||||||| || || ||||||||||||
Sbjct 482 TTCTTGAGCGCTTTAAGCGGTGCGGGTGAAAGATTAGTTATTGTAGAGTTTTATGGAACT 541
Query 374 TGGTGTGGTTCTTGCCGTGCAATGTTCCCAAAGCTTTGCAAAACAGCGAAAGAACA-CCC 432
||||||| ||||||| | ||| ||||||||||||||||||| |||||| ||||| |||
Sbjct 542 TGGTGTGCTTCTTGCAGAGCATTGTTCCCAAAGCTTTGCAAGACAGCGGTGGAACATCCC 601
Query 433 TGAAATCTTGTTCCTTAAAGTAAACTTTGATGAGAACAAGTCTCTCTGCAAAAGCTTAAA 492
|| || |||||||||||||||||||||||||||| || | | ||||| || || ||
Sbjct 602 -GATATAGTGTTCCTTAAAGTAAACTTTGATGAGAATAAACCGATGTGCAAGAGTTTGAA 660
Query 493 CGTCA-AGGTG-TTACCATACTTCCACTTCTACCGCGGTGCTGATGGCCAAG-TCGAATC 549
||| | || || || || | |||||||| ||||| || |||||||| || | | || ||
Sbjct 661 CGTGAGAG-TGCTT-CCTTTTTTCCACTTTTACCGTGGAGCTGATGGTCA-GCTTGAGTC 717
Query 550 CTTCTCATGCTCTCTTGCCAAG 571
|||||||| |||||||| |||
Sbjct 718 ATTCTCATGTTCTCTTGCTAAG 739
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5