BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492200
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1476 0.0
> AT4G26130.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G56980.1);
Has 121 Blast hits to 116 proteins in 19 species: Archae
- 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 113;
Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). |
chr4:13239979-13241283 REVERSE LENGTH=1305
Length=1305
Score = 1476 bits (799), Expect = 0.0
Identities = 899/946 (95%), Gaps = 12/946 (1%)
Strand=Plus/Plus
Query 1 AACAACAATGGAGCTACTCACAAGCTTGACCAACTGGTTAACTCCGACGACTCTCTTCCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 14 AACAACAATGGAGCTACTCACAAGCTTGACCAACTGGTTAACTCCGACGACTCTCTTCCT 73
Query 61 CCTCCTCAACTTCACGATCGGCACTATCTTCATCACCAACCGGTTCAGTTCCGGTTCAAG 120
||||||||| |||||||||| ||| || |||||||||||||||||||||||| |||||||
Sbjct 74 CCTCCTCAATTTCACGATCGCCACCATTTTCATCACCAACCGGTTCAGTTCCTGTTCAAG 133
Query 121 AAAACACAACCCGA-ATCAAGATGGTTTC-GG--GTCGGGTCATGACCAAAATCATGCAC 176
||||||||| || | |||||||||||| | || ||||||||||||||||||||| ||||
Sbjct 134 AAAACACAA-CCAACATCAAGATGGTTACGGGTCGTCGGGTCATGACCAAAATCAGGCAC 192
Query 177 GGTTTGGCAGACCTCCTTCGCTCATAGACAGAGTCAGGTCCATCAACTTCCATCTCTACA 236
|||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||
Sbjct 193 GGTTTGGCAGACCTCCTTCGCTCATAGACAGAGTAAAGTCCATCAACTTCCATCTGTACA 252
Query 237 ATTCTCCTTCACCAGAATCCGAGATCCACTTCTCCGGGTCGGATCCTAACCAGAATCCAC 296
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||
Sbjct 253 ATTCTCCTTCACCAGAATCCGAGATCCACTACTCCGGGTCGGATCCTAACCCGAACCCAC 312
Query 297 CTCCTTCTCTCTTGCAACGGGTCAAATCCATCAACGTGCCTTACTTCAAGTTCCCACAAC 356
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 313 CTCCTTCTCTCTTGCAACGGGTCAAATCCATCAACATGCCTTACTTCAAGTTCCCACAAC 372
Query 357 ACAATTCTGAAGGAGATTACGCTGCTTACGAGCTCATGACCCGACCCGAAGAGACTAACC 416
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 373 ACAATTCTGAAGGAGATTACGCTGCTTACGAGCTCATGACCCAACCCGACGAGACTAACC 432
Query 417 GGGTCGACCCGATCGACAAGATCCCGGAAGATGACGTCATGACCGAACCTAGATTCGGAG 476
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 433 GGGTCGACCCGATCGACAAGATCCCGGAGGATGACGTCACGACCGAACCTAGATTCGGAG 492
Query 477 CTCCATCACTCTTGCAGCGGGTAAAATCCATAAAGCTTCCTTCTTTATACAGATCCGACC 536
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 493 CTCCATCACTCTTGCAGCGGGTGAAATCCATAAAGCTTCCTTCTTTATACAGATCCGACC 552
Query 537 CAGATCCAACCCCAGAAGAGCAAACACCGGCGAGGACGAAGTCGGAGTCGAGTAAACCGG 596
|||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 553 CAGATCCAACACCAGAAGTGCAAACACATACGAGGACGAAGTCGGAGTCGAGTAAACCGG 612
Query 597 CGACGAAGAAGAAGAAGAAAGCTACAAAGAAGATGATGAAATCTGCTAGCGAGAGACACA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 CGACGAAGAAGAAGAAGAAAGCTACAAAGAAGATGATGAAATCTGCTAGCGAGAGACACA 672
Query 657 TCGGCCGGGAAGAGGAG-A--CAGTTGAGGCGGTGGAGAAGAGAAGGCCGGAGACGATGA 713
||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||
Sbjct 673 TCGGCCGGGAAGAGGAGGAGACAGTTGAGGCCGTGGAGAAGAGAAGGCCGGAGACGATGA 732
Query 714 GAGTTGAAAGAACGACGTCGATCGGCGACGGAGGAGAAGAAGGTGTCGACGATAAAGCTT 773
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 733 GAGTTGAGAGAACGACGTCGATAGGAGACGGAGGAGAAGAAGGTGTCGACGATAAAGCTT 792
Query 774 CAAATTTCATCAACAAGTTTAAGCAGCAACTTAAGCTACAGAGGCTAGATTCGTTTCTAA 833
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 793 CAAATTTCATCAACAAGTTTAAGCAACAGCTTAAGCTACAGAGGCTAGATTCGTTTCTAA 852
Query 834 GGTACAGAGAGATGCTCAAGAACGACTAAGTGAAGATTACGCTTTTACCCTTAT-TCGGA 892
||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||
Sbjct 853 GGTACAGAGAGATGCTCAAGAACGATTAAGTGAAGATTACGCTTTTACCCTT-TGTCGGA 911
Query 893 ATCGTCTTTCCC-CGGCTTTCCAGTTTGGAGTTTCGTGGTAAATAC 937
|||||||||||| || ||||||| |||| | |||||||||||||||
Sbjct 912 ATCGTCTTTCCCTCG-CTTTCCAATTTGTACTTTCGTGGTAAATAC 956
Score = 366 bits (198), Expect = 2e-100
Identities = 229/243 (94%), Gaps = 6/243 (2%)
Strand=Plus/Plus
Query 934 ATAC-TATTTTATAGTTTGTG-TCTAGATTTGGTGATGACTGGATGACAAAACTAGTTTG 991
|||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 990 ATACGTATTTTCTAGTTTGTGTTCTAGATTTGGTGATGACTGGATGACAAAACTAGTTTG 1049
Query 992 TGTCGTGTGCGTAATTGCTGGATCTGGACGTATGAGTTCCACTGCACttttttgtttttA 1051
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 TGTCGTGTGCGTAATTGCTGGATCTGGACGTATGAGTTCCACTGCACTTTTTTGTTTTTA 1109
Query 1052 CTCGATGGTAAAAGTAAATTTTATGCTGTTTTTACGTGGAAAAA-GTATT-CTAAAATAA 1109
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||| |||
Sbjct 1110 CTCGATGGTAAAAGTAGTTTTTATGCTGTTTTTACGTGGAAAAAAGTATTTCTAA--TAA 1167
Query 1110 TCTTATTTTCTTTAAATCAAACATGCATCGATAGTTGCGACAGAAGAAAAACATTCATCT 1169
| |||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 1168 TATTATTTTCTTTAAATCGAACATTCATCGATAATTGCGACAGAAGAAAAACATTCATCG 1227
Query 1170 ATA 1172
|||
Sbjct 1228 ATA 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57529824570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5