BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492203
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26110.1 | Symbols: NAP1;1, ATNAP1;1 | nucleosome assembly p... 1827 0.0
AT5G56950.1 | Symbols: NFA03, NFA3, NAP1;3 | nucleosome assembl... 1181 0.0
> AT4G26110.1 | Symbols: NAP1;1, ATNAP1;1 | nucleosome assembly
protein1;1 | chr4:13232595-13235879 FORWARD LENGTH=1613
Length=1613
Score = 1827 bits (989), Expect = 0.0
Identities = 1232/1341 (92%), Gaps = 49/1341 (4%)
Strand=Plus/Plus
Query 1 TTTAAGGGTTAAGAGTCGCCTCCCCAAAAACCC---T--C--Gtctcttctgcttcttct 53
||||||||||| ||||||||||||| ||||||| | | ||||||||||||||||||
Sbjct 23 TTTAAGGGTTACGAGTCGCCTCCCC-AAAACCCTTGTCCCTAGTCTCTTCTGCTTCTTCT 81
Query 54 ccctcaaatctctctctcttcACCAAATCCTCAGAAGATGAGCAACGACAAGGACAACTT 113
| ||||| |||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 82 TCTTCAAA-ATCTCTCTCTTCACCAAATCCTCAGAAGATGAGCAACGACAAGGATAGCTT 140
Query 114 CAACGTCTCCGATCTTACTGCTGCTCTTAAAGATG-GCGATCGAGCTGACCTTGTCAATG 172
|||||||||||||||||||||||||||||| || | | |||||||||| |||||||||||
Sbjct 141 CAACGTCTCCGATCTTACTGCTGCTCTTAAGGACGAG-GATCGAGCTGGCCTTGTCAATG 199
Query 173 CTCTAAAGAACAAGCTGCAGAATCTGGCTGGTCAGCGTTCTGATGTGCTCGAGAATCTGA 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 200 CTCTAAAGAACAAGCTGCAGAATCTGGCTGGTCAGCGTTCTGATGTGCTCGAGAATCTGA 259
Query 233 CTCCTATTGTGAGAAAGCGTGTCGATGCCTTGAGGGATATACAGAGCCAACATGATGAAC 292
|||| | |||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 260 CTCCCAATGTGAGAAAGCGCGTTGATGCCTTGAGGGATATACAGAGCCAACATGATGAAC 319
Query 293 TAGAGGCAAAATTCCGTGAGGAGCGGGCGATTCTTGAAGCCAAGTATCAAAAGTTGTATC 352
||||||||||||||||||||||| | || |||||||||||||||||||||| | ||||||
Sbjct 320 TAGAGGCAAAATTCCGTGAGGAGAGAGCTATTCTTGAAGCCAAGTATCAAACGCTGTATC 379
Query 353 AGCCTTTGTATACCAAGCGTTATGAGATTGTGAATGGAACTACTGAAGTTGAACAGGCTG 412
||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 380 AGCCTTTGTATGTCAAGCGTTATGAGATTGTGAATGGCACTACTGAAGTTGAACTGGCTC 439
Query 413 CAGAGGAT-AT--TAAGGCGGACCAAGGAGAGGAGAAAACTGCAGAAGAGAAAGGAGTTC 469
|||||||| || |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 440 CAGAGGATGATACCAAGGTGGACCAAGGAGAGGAGAAAACTGCAGAAGAGAAAGGAGTTC 499
Query 470 CAAGTTTCTGGCTGACAGCCCTGAAAAACAATGATGTTATTTCCGAGGAGGTCACGGAGC 529
||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||
Sbjct 500 CAAGTTTCTGGCTGACAGCTCTGAAAAATAACGATGTTATTTCCGAGGAGGTCACAGAGC 559
Query 530 GTGATGAAGGGGCTCTCAAATATCTTAAAGATATTAAGTGGTGCAAGATTGAAGAACCTA 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 560 GTGATGAAGGGGCTCTCAAATATCTTAAAGATATTAAGTGGTGCAAGATTGAAGAGCCTA 619
Query 590 AAGGATTCAAACTTGAATTTTTCTTTGACACAAATCCATATTTTAAGAACACTGTCTTGA 649
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 620 AAGGATTCAAACTTGAGTTTTTCTTTGACACGAATCCGTATTTTAAGAACACTGTCTTGA 679
Query 650 CAAAGTCTTATCACATGATTGATGAAGATGAGCCACTGCTTGAGAAGGCTATGGGGACAG 709
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 CAAAGTCTTATCATATGATTGATGAAGATGAGCCACTGCTTGAGAAGGCTATGGGGACAG 739
Query 710 AAATTGATTGGTATCCTGGAAAGTGTCTAACTCAGAAGATTCTTAAGAAGAAGCCTAAGA 769
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 740 AAATTGATTGGTATCCTGGAAAGTGTCTAACTCAGAAGATTCTCAAGAAGAAGCCTAAGA 799
Query 770 AAGGTTCAAAGAATGCTAAACCAATCACCAAAAC-CGAAGACTGTGAAAGCTTCTTCAAC 828
|||||||||||||| ||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 800 AAGGTTCAAAGAATACTAAACCAATCACCAAA-CTCGAAGATTGTGAAAGCTTCTTCAAC 858
Query 829 TTCTTTAGTCCTCCAGAAGTTCCGGATGAAGATGAAGATATCGACGAGGAAAGAGCTGAG 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 TTCTTTAGTCCTCCAGAAGTTCCGGATGAAGATGAAGATATCGACGAGGAAAGAGCTGAG 918
Query 889 GATCTTCAAAATCTGATGGAACAAGATTATGACATTGGATCTACTATTCGGGACAAGATT 948
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 919 GATCTTCAAAACCTGATGGAACAAGATTATGACATCGGATCTACTATTCGGGAAAAGATT 978
Query 949 ATTCCACGTGCTGTCTCATGGTTCACTGGTGAGGCTATGGAAGCAGAGGATTTTGAAATa 1008
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 979 ATTCCTCGTGCTGTCTCATGGTTTACTGGTGAGGCTATGGAAGCAGAGGATTTTGAAATA 1038
Query 1009 gatggcgatgaggaagatgacattgatgaggatgatgaagaggatgaggaagacgaagat 1068
|||| |||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 1039 GATGACGATGAGGAAGATGACATTGATGAGGATGA--A-GA---TGAGGAAGACGAAGAG 1092
Query 1069 gacgaggaggatgatgatgatgaggatgaggaggatgaagaagaaAGCAAGACCAAAAAG 1128
|| |||||||| ||||||||||||||||| || | | ||| | ||||||||||||||
Sbjct 1093 GATGAGGAGGACGATGATGATGAGGATGA--AG-A--A-GAA-A--GCAAGACCAAAAAG 1143
Query 1129 AAGCCATCAATCAGAAACAAGAAAGGAGGGAGATCTAAGATAGTTGGTGATGGTGAACAA 1188
|||||||||||| | |||||||| |||||||||||| ||||||||||||| ||| |||||
Sbjct 1144 AAGCCATCAATCGGCAACAAGAAGGGAGGGAGATCTCAGATAGTTGGTGAAGGTAAACAA 1203
Query 1189 GGTGAGAGGCCACCAGAGTGCAAGCAACAGTAATCT----CTACGCTCTACCAAACA-A- 1242
| |||||||||||| || |||||||||||||||||| ||||||||||||| ||| |
Sbjct 1204 GATGAGAGGCCACCCGAATGCAAGCAACAGTAATCTTTTACTACGCTCTACCAGACATAA 1263
Query 1243 --GGACTGCGTGAAAA-ATA-T---G-T--TTCT--GTTCATCAAGAATGACGATTGAGA 1290
||| |||||||||| ||| | | | |||| ||||||||||||||| ||||||||
Sbjct 1264 AAGGATTGCGTGAAAATATAATTCAGGTCATTCTCTGTTCATCAAGAATGAGGATTGAGA 1323
Query 1291 AAAAGTTTTGGGTTTTTTAAA 1311
||| |||||||| ||||||||
Sbjct 1324 AAAGGTTTTGGGATTTTTAAA 1344
> AT5G56950.1 | Symbols: NFA03, NFA3, NAP1;3 | nucleosome assembly
protein 1;3 | chr5:23032449-23035661 FORWARD LENGTH=1656
Length=1656
Score = 1181 bits (639), Expect = 0.0
Identities = 977/1142 (86%), Gaps = 16/1142 (1%)
Strand=Plus/Plus
Query 85 CAGAAGATGAGCAACGACAAGGACAACTTCAACGTCTCCGATCTTACTGCTGCTCTTAAA 144
||||| ||||||||||| ||||||| ||||| ||| |||||| ||| |||||||||||
Sbjct 164 CAGAAAATGAGCAACGATAAGGACAGTTTCAATGTCAGCGATCTCACTTCTGCTCTTAAA 223
Query 145 GATG-GCGATCGAGCTGACCTTGTCAATGCTCTAAAGAACAAGCTGCAGAATCTGGCTGG 203
|||| | |||||||||| |||||||| ||||| ||||||||||| |||||||| |||||
Sbjct 224 GATGAG-GATCGAGCTGGTCTTGTCAACGCTCTTAAGAACAAGCTCCAGAATCTAGCTGG 282
Query 204 TCAGCGTTCTGATGTGCTCGAGAATCTGACTCCTATTGTGAGAAAGCGTGTCGATGCCTT 263
|| | ||||||||||||||||||||||||||||| | |||| |||||| || | ||
Sbjct 283 ACAACATTCTGATGTGCTCGAGAATCTGACTCCTAAAATTAGAAGGCGTGTTGAGGTTTT 342
Query 264 GAGGGATATACAGAGCCAACATGATGAACTAGAGGCAAAATTCCGTGAGGAGCGGGC-GA 322
| |||| || ||| || ||||||||||| ||||| |||||||||| |||||| | || |
Sbjct 343 GCGGGAGATTCAGGGCAAACATGATGAAATAGAGACAAAATTCCGCGAGGAGAGAGCTG- 401
Query 323 TTCTTGAAGCCAAGTATCAAAAGTTGTATCAGCCTTTGTATACCAAGCGTTATGAGATTG 382
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 402 CTCTTGAAGCCAAGTATCAAAAGTTATATCAGCCTTTGTATAACAAGCGTTATGAGATTG 461
Query 383 TGAATGGAACTACTGAAGTTGAACAGGCTGCAGAGGATATTAAGGCGGACCAAGGAGAGG 442
|||||||| |||||||||||||| |||| |||||||| |||| |||||||||||| |
Sbjct 462 TGAATGGAGCTACTGAAGTTGAAGGGGCTCCAGAGGATGCTAAGATGGACCAAGGAGACG 521
Query 443 AGAAAACTGCAGAAGAGAAAGGAGTTCCAAGTTTCTGGCTGACAGCCCTGAAAAACAATG 502
||||||||||||||||||||||||| || |||||||||||||| || |||||||| ||||
Sbjct 522 AGAAAACTGCAGAAGAGAAAGGAGTCCCTAGTTTCTGGCTGACTGCTCTGAAAAATAATG 581
Query 503 ATGTTATTTCCGAGGAGGTCACGGAGCGTGATGAAGGGGCTCTCAAATATCTTAAAGATA 562
||||||| || || ||| |||| |||||||||||||| || || | ||||||||||||||
Sbjct 582 ATGTTATATCTGAAGAGATCACAGAGCGTGATGAAGGAGCCCTTATATATCTTAAAGATA 641
Query 563 TTAAGTGGTGCAAGATTGAAGAACCTAAA-GGATTCAAACTTGAATTTTTCTTTGACACA 621
| ||||||||||||||||||||||| ||| |||||||||||||| |||||||| ||| ||
Sbjct 642 TCAAGTGGTGCAAGATTGAAGAACC-AAAGGGATTCAAACTTGAGTTTTTCTTCGAC-CA 699
Query 622 -AATCCATATTTTAAGAACACTGTCTTGACAAAGTCTTATCACATGATTGATGAAGATGA 680
||||| || || || ||||| | || |||||| | ||||| |||||||||||||||||
Sbjct 700 GAATCCTTACTTCAAAAACACCCTATTAACAAAGGCGTATCATATGATTGATGAAGATGA 759
Query 681 GCCACTGCTTGAGAAGGCTATGGGGACAGAAATTGATTGGTATCCTGGAAAGTGTC-TAA 739
||| ||||||||||||||||| |||||||| |||||||||||||||||||| || | |||
Sbjct 760 GCCTCTGCTTGAGAAGGCTATTGGGACAGAGATTGATTGGTATCCTGGAAAATG-CTTAA 818
Query 740 CTCAGAAGATTCTTAAGAAGAAGCCTAAGAAAGGTTCAAAGAATGCTAAACCAATCACCA 799
||||||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||
Sbjct 819 CTCAGAAGATTCTTAAGAAGAAGCCTAAGAAAGGTGCAAAGAATGCCAAGCCAATTACCA 878
Query 800 AAACCGAAGACTGTGAAAGCTTCTTCAACTTCTTTAGTCCTCCAGAAGTTCCGGATGAAG 859
|||| ||||| ||||||||||||||||||||||| | |||||| ||||||| ||||| |
Sbjct 879 AAACTGAAGATTGTGAAAGCTTCTTCAACTTCTTCAATCCTCCCCAAGTTCCTGATGATG 938
Query 860 ATGAAGATATCGACGAGGAAAGAGCTGAGGATCTTCAAAATCTGATGGAACAAGATTATG 919
||||||| || ||||| |||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 939 ATGAAGACATTGACGAAGAAAGAGCCGAGGAACTTCAGAATCTGATGGAACAAGATTATG 998
Query 920 ACATTGGATCTACTATTCGGGACAAGATTATTCCACGTGCTGTCTCATGGTTCACTGGTG 979
||||||| ||||| || ||||| ||||| || || | ||||||||||||||| |||||||
Sbjct 999 ACATTGGTTCTACAATCCGGGAGAAGATCATACCTCATGCTGTCTCATGGTTTACTGGTG 1058
Query 980 AGGCTATGGAAGCAGAGGATTTTGAAATagatggcgatgaggaagatgacattgatgagg 1039
||||||| || | |||||| ||||||||||| || || |||||||| || |||||||
Sbjct 1059 AGGCTATTGAGGGAGAGGAGTTTGAAATAGACAATGACGATGAAGATGATATCGATGAGG 1118
Query 1040 atgatgaagaggatgaggaagacgaagatgacgaggaggatgatgatgatgaggatgagg 1099
|||| || |||||||| ||||| ||||| || || ||||| || || || || |||||||
Sbjct 1119 ATGAAGATGAGGATGAAGAAGATGAAGACGAAGATGAGGAAGAAGACGACGAAGATGAGG 1178
Query 1100 aggatgaagaagaaAGCAAGACCAAAAAGAAGCCATCAATCAGAAACAAGAAAGGAGGGA 1159
|||| | |||| ||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 1179 AGGA--A-GAAGTAAGCAAGACCAAAAAGAAGCCATCAGTCTTACACAAGAAAGGAGGGA 1235
Query 1160 GATCTAAGATAGTTGGTGATGGTGAACAAGGTGAGAGGCCACCAGAGTGCAAGCAACAGT 1219
|| || || ||| |||| | ||||||| |||||||| || || ||||| |||||||
Sbjct 1236 GACCTCAG---GTTACCGATGATCAACAAGGAGAGAGGCCTCCTGAATGCAAACAACAGT 1292
Query 1220 AA 1221
||
Sbjct 1293 AA 1294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64507700325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5