BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492204
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26100.1 | Symbols: CK1, CKL1 | casein kinase 1 | chr4:13227... 2242 0.0
AT5G57015.1 | Symbols: ckl12 | casein kinase I-like 12 | chr5:2... 1136 0.0
AT2G19470.1 | Symbols: ckl5 | casein kinase I-like 5 | chr2:843... 593 1e-168
AT4G26090.1 | Symbols: RPS2 | NB-ARC domain-containing disease ... 113 5e-24
> AT4G26100.1 | Symbols: CK1, CKL1 | casein kinase 1 | chr4:13227450-13230797
REVERSE LENGTH=2077
Length=2077
Score = 2242 bits (1214), Expect = 0.0
Identities = 1406/1494 (94%), Gaps = 31/1494 (2%)
Strand=Plus/Plus
Query 182 GGGGTTTCGTGGTTATTGATGGAACCTCGTGTTGGGAACAAGTTTCGGCTCGGACGAAAG 241
||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 272 GGGGTTTCGTGGTTATTTATGGAACCTCGTGTGGGGAACAAGTTTCGTCTCGGCCGAAAG 331
Query 242 ATCGGTAGTGGTTCGTTTGGGGAGATCTATCTCGGTACTAATATTCATACGAATGAAGAA 301
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 332 ATCGGTAGTGGTTCGTTTGGAGAGATCTATCTCGGTACTAATATTCATACGAATGAAGAA 391
Query 302 GTGGCTATTAAGCTTGAAAGTGTGAAGACAAAACATCCGCAGCTGCTCTATGAATCAAAG 361
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||
Sbjct 392 CTGGCTATTAAGCTTGAAAATGTGAAGACAAAACATCCACAGCTGCTCTATGAATCGAAG 451
Query 362 TTGTACAGGATTCTACAAGGGGGAACTGGTGTTCCAAATGTCAAATGGTTTGGTGTTGAA 421
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 TTATACAGGATTCTACAAGGGGGAACTGGTGTTCCAAATGTCAAATGGTTTGGTGTTGAA 511
Query 422 GGGGACTATAATGTTTTGGTCATGGATTTACTCGGACCAAGTCTTGAAGATCTCTTCAAT 481
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 512 GGGGACTATAATGTTTTGGTGATGGATCTACTCGGACCAAGTCTTGAAGATCTCTTCAAT 571
Query 482 TTTTGTAGCAGGAAACTTTCCTTGAAGTCAGTCCTCATGCTTGCTGATCAAATGATCAAC 541
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 572 TTTTGTAGCAGGAAACTTTCATTGAAGTCTGTCCTCATGCTTGCTGATCAAATGATCAAC 631
Query 542 CGTGTTGAGTATTTTCATTCAAAATCTTTCCTTCACCGAGATCTCAAGCCAGACAATTTC 601
|||||||||| |||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 632 CGTGTTGAGTTTTTTCATTCAAAGTCTTTCCTTCACCGAGATCTTAAGCCAGACAACTTC 691
Query 602 CTAATGGGCCTTGGAAGGCGTGCAAACCAGGTATACATCATTGACTTTGGTCTTGCTAAG 661
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 692 CTCATGGGCCTTGGAAGGCGTGCGAACCAGGTATACATCATTGACTTTGGTCTTGCTAAG 751
Query 662 AAGTACAGGGATAGTACAACACATCAGCACATTCCCTACAGGGAAAATAAGAACCTGACA 721
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 752 AAGTATAGGGATAGTACAACACATCAGCACATTCCCTACAGGGAAAATAAAAACCTGACA 811
Query 722 GGAACTGCGAGATATGCTAGTATGAACACTCACTTGGGAATTGAACAAAGTCGAAGGGAT 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 GGAACTGCGAGATATGCTAGTATGAACACTCACTTGGGAATTGAACAAAGTCGAAGGGAT 871
Query 782 GATCTTGAGTCTCTTGGTTACATCCTTATGTATTTCCTCAAAGGAAGTCTTCCATGGCAA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 GATCTTGAGTCTCTTGGTTACATCCTTATGTATTTCCTCAAAGGAAGTCTTCCATGGCAA 931
Query 842 GGACTGAAAGCTGGAACCAAAAAGCAAAAGTACGAAAGGATTAGCGAAAAGAAAGTTTCT 901
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 932 GGACTGAAAGCTGGAACCAAAAAGCAAAAGTATGAAAGGATTAGTGAAAAGAAAGTTTCT 991
Query 902 ACATCCATTGAGGCATTATGTCGTGGTTACCCGTCCGAATTTGCATCATATTTCCACTAC 961
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 992 ACATCCATTGAGGCTTTATGTCGTGGTTACCCATCCGAATTTGCATCCTATTTCCACTAC 1051
Query 962 TGTCGGTCGCTGCGTTTTGATGATAAACCAGATTATGCTTATCTCAAAAGAATATTTCGA 1021
||||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1052 TGTCGGTCGCTTCGGTTTGATGATAAACCAGATTACGCTTATCTGAAAAGAATATTTCGA 1111
Query 1022 GATCTCTTTATCCGTGAAGGGTTTCAATTTGATTATGTGTTTGACTGGACAATCTTGAAG 1081
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1112 GATCTCTTTATCCGTGAAGGGTTTCAGTTTGATTACGTGTTTGACTGGACAATCTTGAAA 1171
Query 1082 TATCAACAATCACAACTAACAGCTCCCCCATCTCGTGGCCTCAATCCTGCTGTTGGAACT 1141
|||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||
Sbjct 1172 TATCAACAATCACAACTAACCGCTCCCCCATCTCGTGCCCTCAATCCTGCTGTGGGAACT 1231
Query 1142 AGCGCCGCGTTGCCTCCGGGCATTTCCAACATCGATAGATACACAGGGGAGGAAGAAGGG 1201
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 AGTGCCGCATTGCCTCCGGGCATTTCCAACATCGATAGATACACAGGGGAGGAAGAAGGG 1291
Query 1202 CGACCGCATATGGAATCATCTCGACGGAGAGTTTCAGGTGCTCTTGAGAACTCGGGGAAT 1261
||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1292 CGACCACATATGGAATCATCTCGACGGAGAGTTTCAGGGGCTCTTGATAACTCAGGGAAT 1351
Query 1262 ATTTCGAACCAACAGACATCCTCGAGTGCTAGAGACTCCATGATCCCGAGCTCCTCGTTG 1321
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1352 ATTTCGAACCAACCGACATCCTCAAGTGCTAGAGACTCCATGATCCCGAGCTCCTCGTTG 1411
Query 1322 TTTGCACAATCAGCAGGATCATCGAGGAGAGTAACGGCGGTGAGTGGCAGCCGGGACAAT 1381
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 1412 TTTGCACAATCAGCAGGATCATCGAGGAGAGTAACTGCAGTAAGTGGCAGCCGGGACAAT 1471
Query 1382 TTTCCAGGTAGCGAGGAGTTGTTGCAGAGAAGCCGTACAGGTGACGTCAGCCGTGGCGTG 1441
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1472 TTTCCAGGCAGCGAGGAGTTGTTGCAGAGAAGCCGTACAGGTGACGTCAGCCGCGGCGTG 1531
Query 1442 ATCCCGAGGAACTCTCC-GGTGGAGGCTGGGAAGAGGTCTTCTTCCTCCACAAGAAGACA 1500
|||||||| |||||||| || |||||||||||| | || | |||||||||||
Sbjct 1532 ATCCCGAGAAACTCTCCTGG-GGAGGCTGGGAA-A--TC--C-------ACAAGAAGACA 1578
Query 1501 CTACGAATCAGCGGTTAAAGGCATCGATAATCTTCAAGTCTCGGACGAACACCACCCCCA 1560
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1579 CTACGAATCAGTAGTTAAAGGCATCGATAATCTTCAAGTCTCGGACGAACACCATCCCCA 1638
Query 1561 CTGAATTGATACATTAATTGTACCACTAGGTCAATGGACCTTTT-ATTCCTTTTTCCTTT 1619
|||| | | |||||||| ||| | || | | ||||||| |||||||||||| ||
Sbjct 1639 CTGA-T--A--CATTAATTTTACT-C-AG-T----G-ACCTTTTTATTCCTTTTTCCGTT 1685
Query 1620 ATATTACACTACGAAAATTTGAAAATACAATTTGATTGATCCAC-ATGAAATTT 1672
|| | ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1686 AT-T-ACACTACGAAAATTTGAAAATACAATTTGATTGATCCACCATGAAATTT 1737
Score = 230 bits (124), Expect = 4e-59
Identities = 161/178 (90%), Gaps = 5/178 (3%)
Strand=Plus/Plus
Query 1 ATCTTCGTAATCAATTCTTgagaggagagagagagagagaAGCATCCCAGAAAACGACAT 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTTCGTATTCAATTCTTGAGAGGAGAGAGAGAGAGAGAAGCATCCCAGAAAACGACAT 60
Query 61 TCTGTTCAAATGGAGTTT---CACCAGATCGAGAGCATGAGGAAGATGATTACTGGGTTT 117
|||||||| ||||||||| |||||||||||||||| || |||||||||||||||||||
Sbjct 61 TCTGTTCATATGGAGTTTTTTCACCAGATCGAGAGCACGAAGAAGATGATTACTGGGTTT 120
Query 118 TGATTCA-TCTGTTTTTTATTCCGTAATCTCATTGTTCGTGATCTCTGGGTTGTTTTT 174
||||| | || | || |||||||||||||||||||||||||||||||||||||
Sbjct 121 TGATTTAGTCGGCGAAAAAT-CCGTAATCTCATTGTTCGTGATCTCTGGGTTGTTTTT 177
> AT5G57015.1 | Symbols: ckl12 | casein kinase I-like 12 | chr5:23071097-23074843
FORWARD LENGTH=1985
Length=1985
Score = 1136 bits (615), Expect = 0.0
Identities = 929/1080 (86%), Gaps = 24/1080 (2%)
Strand=Plus/Plus
Query 190 GTGGTTATTGATGGAACCTCGTGTTGGG-AACAAGTTTCGGCTCGGAC-GAAAGATCGGT 247
||| |||| |||||| ||||||| |||| ||||| | ||| ||||| | |||| || ||
Sbjct 402 GTGATTATCGATGGAGCCTCGTG-TGGGAAACAAATATCGTCTCGGCCGGAAA-ATTGGA 459
Query 248 AGTGGTTCGTTTGGGGAGATCTATCTCGGTACTAATATTCATACGAATGAAGAAGTGGCT 307
|| ||||| ||||| ||||||||||| |||||| ||||||| |||||||||||||| ||
Sbjct 460 AGCGGTTCATTTGGAGAGATCTATCTTGGTACTCATATTCAAACGAATGAAGAAGTTGCA 519
Query 308 ATTAAGCTTGAAAGTGTGAAGACAAAACATCCGCAGCTGCTCTATGAATCAAAGTTGTAC 367
|| |||||||||| ||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct 520 ATCAAGCTTGAAAATGTGAAGACGAAACATCCTCAGCTGCTCTATGAATCCAAGTTATAC 579
Query 368 AGGATTCTACAAGGG-GGAACTGGTGTTCCAAATGTCAAATGGTTTGGTGTTGAAGGGGA 426
|| ||||||| |||| |||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 580 AGAATTCTAC-AGGGAGGAACTGGTGTTCCAAATATCAAGTGGTTTGGTGTTGAAGGTGA 638
Query 427 CTATAATGTTTTGGTCATGGATTTACTCGGACCAAGTCTTGAAGATC-TCTTCAATTTTT 485
||| ||| | |||| ||||||||||| || || ||||||||||| | | |||||||| |
Sbjct 639 CTACAATACTCTGGTGATGGATTTACTTGGGCCTAGTCTTGAAGA-CTTGTTCAATTTCT 697
Query 486 GTAGCAGGAAACTTTCCTTGAAGTCAGTCCTCATGCTTGCTGATCAAATGATCAACCGTG 545
||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 698 GTAGCAGGAAACTTTCCTTGAAGTCTGTCCTCATGCTCGCAGATCAAATGATCAACCGTG 757
Query 546 TTGAGTATTTTCATTCAAAATCTTTCCTTCACCGAGATCTCAAGCCAGACAATTTCCTAA 605
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| || |
Sbjct 758 TTGAGTATTTCCATTCGAAATCTTTCCTTCACCGAGATCTTAAGCCAGACAATTTTCTTA 817
Query 606 TGGGCCTT-GGAAGGCGTGCAAACCAGGTATACATCATTGACTTTGGTCTTGCTAAGAAG 664
|||| || |||||||| |||||||||||| ||||||| |||||||||||||| |||||
Sbjct 818 TGGG-TTTAGGAAGGCGCGCAAACCAGGTACACATCATCGACTTTGGTCTTGCAAAGAAA 876
Query 665 TACAGGGATAGTACAACACATCAGCACATTCCCTACAGGGAAAATAAGAACCTGACAGGA 724
||| |||||| ||| || || ||||||||||||||||| ||||||||||| ||||| |||
Sbjct 877 TACCGGGATAATACTACCCACCAGCACATTCCCTACAGAGAAAATAAGAATCTGACTGGA 936
Query 725 ACTGCGAGATATGCTAGTATGAACACTCACTTGGGAATTGAACAAAGTCGAAGGGATGAT 784
||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 937 ACTGCAAGATATGCTAGTATGAACACTCACTTGGGAATTGAGCAAAGCCGAAGGGATGAC 996
Query 785 CTTGAGTCTCTTGGTTACATCCTTATGTATTTCCTCAAAGGAAGTCTTCCATGGCAAGGA 844
|| || |||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct 997 CTAGAATCTCTTGGTTACATTCTCATGTATTTCCTTAAAGGAAGTCTTCCATGGCAAGGA 1056
Query 845 CTGAAAGCTGGAACCAA-AAAGCAAAAGTACGAAAGGATTAGCGAAAAGAAAGTTTCTAC 903
|| |||||||||||||| ||| |||||||| || || || || ||||||||||| |||||
Sbjct 1057 CTTAAAGCTGGAACCAAGAAA-CAAAAGTATGAGAGAATCAGTGAAAAGAAAGTCTCTAC 1115
Query 904 ATCCATTGAGGCATTATGTCGTGGTTACCCGTCCGAATTTGCATCATATTTCCACTACTG 963
||| |||||| | || || ||||||||||| |||||||| ||||| || |||||||||||
Sbjct 1116 ATCAATTGAGTCCTTGTGCCGTGGTTACCCATCCGAATTCGCATCGTACTTCCACTACTG 1175
Query 964 TCGGTCGCTGCGTTTTGATGATAAACCAGATTATGCTTATCTCAAAAGAATATTTCGAGA 1023
|| ||||| || |||||||||||||||||||| | ||| |||||||||||||| || ||
Sbjct 1176 CCGATCGCTTCGGTTTGATGATAAACCAGATTACGGTTACCTCAAAAGAATATTCCGGGA 1235
Query 1024 TCTCTTTATCCGTGAAGGGTTTCAATTTGATTATGTGTTTGACTGGACAATCTTGAAGTA 1083
||||||||||| |||||||||||||| |||||||| ||||||||||| || ||||| ||
Sbjct 1236 CCTCTTTATCCGCGAAGGGTTTCAATTCGATTATGTCTTTGACTGGACCATATTGAAATA 1295
Query 1084 TCAACAATCACAACTAACAGCTCCCCCATCTCGTGGCCTC--AA-TCCTGCTGTTGGAAC 1140
|||||| ||||| ||||| ||||| ||||| |||||||| || |||||| ||||||||
Sbjct 1296 TCAACAGTCACAGCTAACCGCTCCTCCATCCCGTGGCCTAGTAAGTCCTGCGGTTGGAAC 1355
Query 1141 TAGCGCCGCGTT-GCCTCCGGGCATTT-CCAACATCGATAGATACACAGGGGAGGAAGAA 1198
|| || | ||| |||||| || | | ||| ||||||||||||| ||| |||||||||
Sbjct 1356 CAGTGCGG-GTTTGCCTCCCGG-ACTAACCAGCATCGATAGATACGGAGGCGAGGAAGAA 1413
Query 1199 GG-GC--GACCGC-ATATGGAATCATCTCGACGGAGAGTTTCAGGTGCTCTTGAGAACTC 1254
|| | |||| | | ||||| || || ||| ||||| | ||||| |||||||| |||||
Sbjct 1414 GGAGGAAGACCACCA-ATGGATTCGTCACGAAGGAGAATGTCAGGAGCTCTTGAAAACTC 1472
Score = 82.4 bits (44), Expect = 1e-14
Identities = 61/69 (88%), Gaps = 2/69 (3%)
Strand=Plus/Plus
Query 1290 CTAGAGACTCC-ATGATCCCGAGCTCCTCGTTGTTTGCACAATCAGCAGGATCATCGAGG 1348
|||||| | || ||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct 1487 CTAGAGGC-CCAATGATGCCAAGCTCGTCACTGTTTGCACAATCAGCAGGATCATCGAGG 1545
Query 1349 AGAGTAACG 1357
|||||||||
Sbjct 1546 AGAGTAACG 1554
> AT2G19470.1 | Symbols: ckl5 | casein kinase I-like 5 | chr2:8433611-8436553
REVERSE LENGTH=1800
Length=1800
Score = 593 bits (321), Expect = 1e-168
Identities = 727/919 (79%), Gaps = 44/919 (5%)
Strand=Plus/Plus
Query 200 ATGGAACCTCGTGTTGGGAACAAGTTTCGGCTCGGACG-AAAGATCGGTAGTGGTTCGTT 258
||||||||||||||||||||||||||||| || || || ||| || || || || || ||
Sbjct 259 ATGGAACCTCGTGTTGGGAACAAGTTTCGCCTTGGCCGCAAA-ATTGGGAGCGGCTC-TT 316
Query 259 TGGG-GAGATCTATCTCGGTACTAATATTCATACGAATGAAGAAGTGGCTATTAAGCTTG 317
| || ||||| || ||||| ||| || |||| || || |||||||| |||||||||||||
Sbjct 317 TCGGAGAGATTTACCTCGGAACTGATGTTCAGACTAACGAAGAAGTTGCTATTAAGCTTG 376
Query 318 AAAGTGTGAAGACAAAACATCCGCAGCTGCTC-TATGAATCAAAGTTGTACAG-GATTCT 375
||||||||||||| |||||||| || || ||||| || | | | || || | ||||
Sbjct 377 AAAGTGTGAAGACTGCGCATCCGCAATTG-TCATATGAGTCGAGGATATATAGAG-TTCT 434
Query 376 ACAAGGG-GGAACTGGTG-TTCCAAATGTCAAATGGTTTGGTGTTGAAGGGGACTATAAT 433
|| ||| |||||||| | |||||||| | ||||||| ||||||||| |||||||| |||
Sbjct 435 TCA-GGGTGGAACTGG-GATTCCAAATATGAAATGGTATGGTGTTGAGGGGGACTACAAT 492
Query 434 GTTTTGGTCATGGATTTACTCGGACCAAGTCTTGAAGATCTCTTCAATTTTTGTA-GCAG 492
|| || ||||||||||| || || ||||||||||||||| | || | || ||| | | ||
Sbjct 493 GTCTTAGTCATGGATTTGCTTGGTCCAAGTCTTGAAGATTTGTTTAGTTATTGCAAG-AG 551
Query 493 GAAACTTTC-CTTGAAGTCAGTCCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGT 551
| | ||| ||||||| | || || |||||||||||||||||||| || ||| | ||||
Sbjct 552 GCAG-TTTAGCTTGAAGACTGTTCTTATGCTTGCTGATCAAATGATAAATCGTCTCGAGT 610
Query 552 ATT-TTCATTCAAAATCTT-TCCTTCACCGAGATCTCAAGCCAGACAATTTCCTAATGGG 609
| ||||||| || || | || |||| || ||| | ||||| || ||||| || |||||
Sbjct 611 -TCATTCATTCTAAGTCGTATC-TTCATCGTGATATAAAGCCGGATAATTTTCTCATGGG 668
Query 610 CCTT-GGAAGGCGTGCAAACCAGGTATACATCATTGACTTTGGTCTTG-CTAAGAAGTAC 667
| || || ||||| ||||| ||||| |||||||| |||| |||| ||| ||||||| ||
Sbjct 669 C-TTAGGGAGGCGGGCAAATCAGGTCTACATCATAGACTATGGT-TTGGCTAAGAAATAT 726
Query 668 AGGGATAG-TACAACACATCAGCACAT-TCCC-TACAGGGAAAATAAGAAC-CTGACAGG 723
|| || || | |||| ||| || |||| |||| |||||||| ||||| || || | ||
Sbjct 727 AGAGACAGCT-CAACTCAT-AG-ACATATCCCATACAGGGAGAATAA-AAGTCTAATTGG 782
Query 724 AACTGCGAGATATGCTAG-TATGAACACTCACTT-GGGAATTGAACAAAGTCGAAGGGAT 781
||| |||| ||||| || | ||||||||||| | |||| |||| |||||||| || |||
Sbjct 783 GACTCCGAGGTATGCCAGCT-TGAACACTCACCTAGGGA-TTGAGCAAAGTCGGAGAGAT 840
Query 782 GATCTTGAGTCTCTTGGTTACATCCTTATGTATTTCCTCAAAGGAAGTCTTCCATGGCAA 841
||| | || || |||||||||||||| |||||||||||||| |||||||| || ||||||
Sbjct 841 GATATAGAATCGCTTGGTTACATCCTCATGTATTTCCTCAAGGGAAGTCTCCCTTGGCAA 900
Query 842 GGACTGAAAGCTGGAACCAA-AAAGCAAAAGTACGA-AAGGATTAGCGAAAAGAAAGTTT 899
|| ||||||||||||| ||| ||| || ||||| || ||| || ||||||||||| ||||
Sbjct 901 GGGCTGAAAGCTGGAAACAAGAAA-CAGAAGTATGATAAG-ATCAGCGAAAAGAAGGTTT 958
Query 900 CTACATCCATTGAGGCATTATGTC-GTGGTTACCCGTCCGAATTTGCATCATATTTCCAC 958
| || ||||| || | ||||| | | ||| | || | || |||||||| || |||||
Sbjct 959 CAACTTCCATCGAAACGTTATG-CAGAGGTCATCCAACAGAGTTTGCATCTTACTTCCAT 1017
Query 959 TACTGTCGGTCGCTGCGTTTTGATGATAAACCAGATTATGCTTATCTCAAAAGAATATTT 1018
||||| || || || | ||||||||||| ||||| ||||| ||| | || ||| ||||
Sbjct 1018 TACTGCCGCTCACTTAGGTTTGATGATAAGCCAGACTATGCATATTTGAAGAGACTATTC 1077
Query 1019 CG-AGATCTCTTTATCCGTGAAGGGTTTCAATTTGATTATGTGTTTGACTGGACAATCTT 1077
|| | | || |||||||| ||||| ||||| ||||||| |||||||||||||||| | |
Sbjct 1078 CGCA-ACCTTTTTATCCGGGAAGGTTTTCAGTTTGATTTTGTGTTTGACTGGACAGTATA 1136
Query 1078 GAAGTATCAACAATCACAA 1096
|||||||| |||||||||
Sbjct 1137 CAAGTATCAGCAATCACAA 1155
> AT4G26090.1 | Symbols: RPS2 | NB-ARC domain-containing disease
resistance protein | chr4:13224338-13227872 FORWARD LENGTH=3535
Length=3535
Score = 113 bits (61), Expect = 5e-24
Identities = 73/78 (94%), Gaps = 4/78 (5%)
Strand=Plus/Minus
Query 1597 GACC-TTTTATTCCTTTTTCCTTTATATTACACTACGAAAATTTGAAAATACAATTTGAT 1655
|||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 3528 GACCTTTTTATTCCTTTTTCC-GT-TATTACACTACGAAAATTTGAAAATACAATTTGAT 3471
Query 1656 TGATCCAC-ATGAAATTT 1672
|||||||| |||||||||
Sbjct 3470 TGATCCACCATGAAATTT 3453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82630097070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5