BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492207
Length=1973
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26080.1 | Symbols: ABI1, AtABI1 | Protein phosphatase 2C fa... 2876 0.0
> AT4G26080.1 | Symbols: ABI1, AtABI1 | Protein phosphatase 2C
family protein | chr4:13219961-13222284 REVERSE LENGTH=2031
Length=2031
Score = 2876 bits (1557), Expect = 0.0
Identities = 1882/2025 (93%), Gaps = 77/2025 (4%)
Strand=Plus/Plus
Query 1 TTAGCCTACCCATTTCCTCTTTCTTTCTCT-TT-TATCTGTGAACAAGACACAAGAAGTA 58
||||||||||||||||||| |||||||||| || |||||||||||||| ||| | ||
Sbjct 16 TTAGCCTACCCATTTCCTCCTTCTTTCTCTCTTCTATCTGTGAACAAGGCAC----ATTA 71
Query 59 GAACTCTTC-TTTCAAC--TTTTAGGTGTATATAGATTG-ATCTAGAAATAG-TTT-TAG 112
||||||||| ||||||| ||||||||||||||||| || |||||||||||| ||| |||
Sbjct 72 GAACTCTTCTTTTCAACTTTTTTAGGTGTATATAGA-TGAATCTAGAAATAGTTTTATAG 130
Query 113 CTGGAAATTAATTG-A-AGAGAGAGATATTATTACACAAATCTTCTCAAGAGGTCCTAAC 170
||||||||||||| | |||||||||||||| ||||| |||||| |||||||||||||||
Sbjct 131 TTGGAAATTAATTGAAGAGAGAGAGATATTACTACACCAATCTTTTCAAGAGGTCCTAAC 190
Query 171 GAATTACCCACAATCCAGGAAACCCTTATTGAAATTCAATTCAATTT-TTTCTTTCTGTG 229
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 191 GAATTACCCACAATCCAGGAAACCCTTATTGAAATTCAATTC-ATTTCTTTCTTTCTGTG 249
Query 230 -TAGTGATTTTCCCGGG-AAtttttttGGGTATATCTCTCTCTCTGTTTTTGCTTTCCTT 287
| |||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||
Sbjct 250 TTTGTGATTTTCCCGGGAAATATTTTTGGGTATA--TGTCTCTCTGTTTTTGCTTTCCTT 307
Query 288 TTTGAGAGGACTCATGTG--T-TTCTTGTCTTCCTAG---CTTC---TAAA-------TC 331
||| | |||| ||||||| | ||||||||||||||| |||| |||| ||
Sbjct 308 TTTCATAGGAGTCATGTGTTTCTTCTTGTCTTCCTAGCTTCTTCTAATAAAGTCCTTCTC 367
Query 332 ---TG--------TCGAATTTTCATTTTTGTTCCATTGGAGCTATCTTTTATATCAGAGA 380
|| ||||||||||||||||||||||||||||||||||| || |||| | |
Sbjct 368 TTGTGAAAATCTCTCGAATTTTCATTTTTGTTCCATTGGAGCTATCTTATAGATCACA-A 426
Query 381 -GAGaaaaaaaGATCAAAGCTTTACCATTAATGGAGGAAGTATCTCCGGCGATCGCAGGT 439
||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 427 CCAGAGAAAAAGATCAAATCTTTACCGTTAATGGAGGAAGTATCTCCGGCGATCGCAGGT 486
Query 440 CCTTTCAGGCCATTCTCCGAAACCCAGATGGATTTCACAGGAATCAGATTGAGTAAAGGT 499
|||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||
Sbjct 487 CCTTTCAGGCCATTCTCCGAAACCCAGATGGATTTCACCGGGATCAGATTGGGTAAAGGT 546
Query 500 TACTGCAATAATAACCAATACTCAACTCAAGATTCCGAGAACGGAGATCTAATGGTTTCG 559
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 547 TACTGC---AATAACCAATACTCAAATCAAGATTCCGAGAACGGAGATCTAATGGTTTCG 603
Query 560 TTATCGGAGA-GT--TCATGCTCTGTTTCTGGGTCACAACATGGTTCTGAATCTAGGAAA 616
||| |||||| | ||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 604 TTACCGGAGACTTCATCATGCTCTGTTTCTGGGT--C-ACATGGTTCTGAATCTAGGAAA 660
Query 617 GTTTTGATTTCTCGGATCAATTCTCCTAATTTAAACATGAAGGAATCAGCAGCTGCTGAT 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTTTTGATTTCTCGGATCAATTCTCCTAATTTAAACATGAAGGAATCAGCAGCTGCTGAT 720
Query 677 ATA---GTCGTTGATATCTCCGCCGGAGATGAGATCAACGGCTCATATGTTCCTAGCGAG 733
||| ||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 721 ATAGTCGTCGTTGATATCTCCGCCGGAGATGAGATCAACGGCTCAGATATTACTAGCGAG 780
Query 734 AAGAAGATGATCAGCAGAACAGAGAGTAGGAGTCTGTTCGAATTCAAGAGTGTGCCTTTG 793
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 781 AAGAAGATGATCAGCAGAACAGAGAGTAGGAGTTTGTTTGAATTCAAGAGTGTGCCTTTG 840
Query 794 TATGGATTTACTTCGATTTGTGGAAGAAGACCTGAGATGGAAGATGCTGTTTCGACAATA 853
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 841 TATGGTTTTACTTCGATTTGTGGAAGAAGACCTGAGATGGAAGATGCTGTTTCGACTATA 900
Query 854 CCAAGATTCCTTCAATCTTCCTCTGGTTCCATGTTAGATGGTCGTTTTGATCCTCAATCA 913
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 901 CCAAGATTCCTTCAATCTTCCTCTGGTTCGATGTTAGATGGTCGGTTTGATCCTCAATCC 960
Query 914 ACCGCTCATTTCTTCGGTGTTTACGACGGCCATGGCGGTTCTCAGGTAGCGAACTATTGT 973
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GCCGCTCATTTCTTCGGTGTTTACGACGGCCATGGCGGTTCTCAGGTAGCGAACTATTGT 1020
Query 974 AGAGAGAGGATGCATTTGGCTTTAGCGGAGGAGATAGCTAAGGAGAAACCGATGCTCTGC 1033
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1021 AGAGAGAGGATGCATTTGGCTTTGGCGGAGGAGATAGCTAAGGAGAAACCGATGCTCTGC 1080
Query 1034 GACGGTGACACGTGGCTGGAGAAGTGGAAGAAAGCTCTTTTCAACTCGTTCCTGAGAGTT 1093
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GATGGTGATACGTGGCTGGAGAAGTGGAAGAAAGCTCTTTTCAACTCGTTCCTGAGAGTT 1140
Query 1094 GACTCTGAGATCGAGTCAGTTGCGCCGGAGACGGTTGGGTCAACGTCGGTGGTTGCTGTT 1153
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1141 GACTCGGAGATTGAGTCAGTTGCGCCGGAGACGGTTGGGTCAACGTCGGTGGTTGCCGTT 1200
Query 1154 GTTTTCCCGACTCACATCTTCGTCGCTAACTGCGGTGACTCCAGAGCTGTTCTTTGCCGC 1213
||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1201 GTTTTCCCGTCTCACATCTTCGTCGCTAACTGCGGTGACTCTAGAGCCGTTCTTTGCCGC 1260
Query 1214 GGCAAAACTGCACTCCCATTATCCGTTGACCATAAACCGGATAGAGAAGATGAGGCGGCG 1273
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1261 GGCAAAACTGCACTTCCATTATCCGTTGACCATAAACCGGATAGAGAAGATGAAGCTGCG 1320
Query 1274 AGGATTGAAGCCGCAGGAGGGAAAGTGATCCAGTGGAATGGAGCTCGTGTTTTCGGTGTT 1333
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1321 AGGATTGAAGCCGCAGGAGGGAAAGTGATTCAGTGGAATGGAGCTCGTGTTTTCGGTGTT 1380
Query 1334 CTCGCCATGTCTAGATCCATTGGCGATAGATACTTGAAACCATCCATCATTCCTGATCCG 1393
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 CTCGCCATGTCGAGATCCATTGGCGATAGATACTTGAAACCATCCATCATTCCTGATCCG 1440
Query 1394 GAAGTGACGGCTGTGAAGAGAGTTAAAGAAGATGATTGTCTGATTCTT-GCGAGTGACGG 1452
||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||
Sbjct 1441 GAAGTGACGGCTGTGAAGAGAGTAAAAGAAGATGATTGTCTGATT-TTGGCGAGTGACGG 1499
Query 1453 GGTTTGGGATGTAATGACGGATGAGGAAGCGTGTGAGATGGCTAGGAAGCGGATTCTCTT 1512
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1500 GGTTTGGGATGTAATGACGGATGAAGAAGCGTGTGAGATGGCAAGGAAGCGGATTCTCTT 1559
Query 1513 GTGGCACAAGAAGAACGCAGTGGCTGGGGATGCATCGTTGCTCGCAGATGAGCGGAGAAA 1572
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1560 GTGGCACAAGAAAAACGCGGTGGCTGGGGATGCATCGTTGCTCGCGGATGAGCGGAGAAA 1619
Query 1573 GGAAGGGAAAGATCCCGCAGCGATGTCTGCGGCTGAGTATTTGTCAAAGCTGGCAATACA 1632
||||||||||||||| || |||||||| |||||||||||||||||||||||||| |||||
Sbjct 1620 GGAAGGGAAAGATCCTGCGGCGATGTCCGCGGCTGAGTATTTGTCAAAGCTGGCGATACA 1679
Query 1633 GAGAGGAAGCAAAGACAACATAAGTGTGGTGGTGGTTGATTTGAAGCCTCGGAGGAAACT 1692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 GAGAGGAAGCAAAGACAACATAAGTGTGGTGGTGGTTGATTTGAAGCCTCGGAGGAAACT 1739
Query 1693 CAAGAGCAAACCCTTGAACTGAGGCAGAGAGGGTCCTTTTTCTTAATTTTTAAA-TGAAT 1751
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1740 CAAGAGCAAACCCTTGAACTGAGGCAGAGAGGGTCCTTTTTCTTAATTTTTAAAATGAAT 1799
Query 1752 ATGGGTCTCTCCAAGGAAAAAGTATTTACTATTATTACTTTGTGCTTATTAttttttttA 1811
||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| |
Sbjct 1800 ATGGGTCTCTCCAAG-AAAAAGTATTTACTATTATTAATTTGTGCTTATT-TTTTT---A 1854
Query 1812 ACTAACAAGTTAATAACCATATG-AGA-AATGTAGCTTAATGTGTTAAGCTCTTTTGTCT 1869
|||||||||||| |||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 1855 ACTAACAAGTTA-TAACCATATGGAGATAATGAAGCTTAATGTGTTAAGCTCTTTTGTCT 1913
Query 1870 TGACAACGTTCTAAAAAGCCCCTTGTATTTT-CTTCCCGGGCTAATTGTAATATGGTTAC 1928
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1914 TGACTACATTCTAAAAAGCCCCTTGTATTTTTCTTCCCGGGCTAATTGTAATATGGTTAC 1973
Query 1929 AACAACATACATTAAGATGTAGTATTATTGTTTATGCAAATACTT 1973
|||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1974 AACA---TACATTAAGATGTAGTATTATTGTTTATGCAATTACTT 2015
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97740461115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5