BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492214
Length=906
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26020.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1026 0.0
> AT4G26020.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo,
flower, seed; EXPRESSED DURING: petal differentiation
and expansion stage, E expanded cotyledon stage, D bilateral
stage. | chr4:13202013-13204049 REVERSE LENGTH=923
Length=923
Score = 1026 bits (555), Expect = 0.0
Identities = 629/666 (94%), Gaps = 0/666 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGCAACAAGCGATGAGCAGATGAATCTGATTCTCTCTAGTTTCGATCAGATCTAC 60
||||||||||||||||| |||||||||||| || ||||||| ||||||||||| ||||||
Sbjct 22 ATGGCGGCAACAAGCGACGAGCAGATGAATTTGCTTCTCTCCAGTTTCGATCAAATCTAC 81
Query 61 GAGGATTTTAAAATCGGGTTAAATGAGATCAATGTTTACAGATCTAAGAGCAATGTTGAA 120
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 82 GAGGATTTTAAAATCGGGTTGAATGAGATCAATGTTTACAGATCAAAGAGCAATGTTGAA 141
Query 121 TCAAGCAGGAGAGAGGTTCTTGAGATTAGTAATAAAAATCTTAAACAAGAGAATGAGAGG 180
|||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||
Sbjct 142 TCAAGCAGGAGAGAGGTTCTTGAGATTAGTAACAAAAATCTCAAAGAAGAGAATGAAAGG 201
Query 181 CTGAAGAAGCTTTATACGGAATCGCTGAACAATTTTGCTGATCAGCTTGAGCATCGAACT 240
|||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||
Sbjct 202 CTGAAGAAGCTTTACACCGAATCTCTCAACAATTTTGCTGATCAGCTTGAGCATCGAACT 261
Query 241 AAGTGCCACAGCTTGAAAGAAGAACTGAAGAGAGTGATTGATGAAAACAAAAGCAAAGAA 300
||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 262 AAGTGTCACAGCTTGAAAGAAGAATTGAAGAGAGTGAATGATGAAAACAAAAGCAAAGAA 321
Query 301 CTTGAACTTGGGAATGCTTTGAAATTGCTTAGGCAGAAGCATGTAACAAAGGTTGAAGAG 360
| ||||| | ||||||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct 322 CATGAACATAGGAATGCTTTGGAATCACTTAGGCAGAAGCATGTAACAAAAGTTGAAGAG 381
Query 361 CTGGAGAATAAAATCAGAAGCCTTTTGGTTGAAAAAGCAACAAACGATATGGTAATTGAT 420
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 CTAGAGTATAAAATCAGAAGCCTTTTGGTTGAAAAAGCAACAAACGATATGGTAATTGAT 441
Query 421 AGGCTTCGACAAGACTTGACAGCTAACAAATCGCATATTCAAGCAATGTCGAAGAAACTG 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 AGACTTCGACAAGACTTGACAGCTAACAAATCGCATATTCAAGCAATGTCGAAGAAACTG 501
Query 481 GATCGAGTAGTTACTGAAGTGGAATGCAAGTATGAGCTCGAGATTCAGGAGCTAAAAGAC 540
|||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||| |||
Sbjct 502 GATCGAGTAGTTACGGAAGTGGAGTGCAAGTATGAACTCGAGATTCAGGATCTAAAGGAC 561
Query 541 TGCCTTCTGATGGAACAAGAAGAGAAAAACGATATCAGTAACAAACTTCAGAGTCTGCAG 600
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 562 TGCCTTCTAATGGAACAAGCAGAGAAAAATGATATCAGTAACAAACTTCAGAGTCTGCAG 621
Query 601 AAGGAATTGCTTATTAGTAAAACGTCAATAGCTGAAAAGCAGAGGGATACAACTTCAAAT 660
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 622 AAGGAATTGCTTATTAGTAGAACGTCAATAGCTGAAAAGCAGAGGGATACAACTTCAAAT 681
Query 661 CGACAG 666
||||||
Sbjct 682 CGACAG 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44256283507
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5