BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492216
Length=1793
Score E
Sequences producing significant alignments: (Bits) Value
AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing p... 2603 0.0
> AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing
protein | chr4:13197246-13199836 FORWARD LENGTH=1819
Length=1819
Score = 2603 bits (1409), Expect = 0.0
Identities = 1677/1803 (93%), Gaps = 32/1803 (2%)
Strand=Plus/Plus
Query 1 TTTTGTGTTGCCGGTTCTAATGGCCGCCGTCGCAGATTCCGTTGAGAACAACGGTACTAT 60
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| | ||
Sbjct 16 TTTTGTGTTACCGGTTCAAATGGCCGCCGTCGCAGATTCCGTTGAGAACAACGGTTCCAT 75
Query 61 AAACCTGCCTGAGAATGAAAACCTTATGCCGGCGGGAATCAGTGCCACGGCATTGCTTGA 120
|||||| |||||||||||||||||||| ||||||||| |||||||| | |||||||||||
Sbjct 76 AAACCTCCCTGAGAATGAAAACCTTATACCGGCGGGATTCAGTGCCGCCGCATTGCTTGA 135
Query 121 AGAAAACTCTGGCGCCTTCTCTGAATTGAATCAGCCCGATAGCTTAGCTGCTGCTGAAAC 180
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 136 CGAAAACTCTGGCGCTTTCCCTGAATTGAATCAGCCCGATAGCTTAGCTGCTGCTGAGAC 195
Query 181 TACCGCCCCCGATACGAACGATTTCGCGGCGGAGAGGTGGCCAGGTTGGCCTGGGGATTG 240
|||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||
Sbjct 196 TACCTTCCCCGATACGAACGATTCCGCGGAGGAGAGGTGGCCAGGTTGGCCTGGTGATTG 255
Query 241 CGTGTTTCGTATGATCGTTCCGGTGACTAAAGTCGGAGCTATAATTGGACGCAAAGGAGA 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 256 CGTGTTTCGTATGATCGTTCCGGTGACTAAAGTCGGAGCTATTATTGGACGCAAAGGTGA 315
Query 301 CTTTATAAAGAAGATGTGTGAAGAGACTCGTGCTCGTATCAAAGTCCTTGATGGTCCTGT 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 316 CTTTATAAAGAAGATGTGTGAGGAGACTCGTGCTCGTATCAAAGTCCTTGATGGTCCTGT 375
Query 361 CAACACTCCCGATCGCATCGTGTTAATATCTGGTAAAGAAGAACCAGAGGCCTACATGTC 420
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 376 TAATACTCCCGATCGCATCGTGTTAATATCTGGTAAGGAAGAACCAGAGGCCTACATGTC 435
Query 421 ACCGGCAATGGACGCAGTTTTAAGGGTGTTTAGACGAGTTTCAGGATTGCCAGATAATGA 480
|||||||||||||||||| || |||||||||||||| |||||||| ||||| ||||||||
Sbjct 436 ACCGGCAATGGACGCAGTGTTGAGGGTGTTTAGACGTGTTTCAGGGTTGCCTGATAATGA 495
Query 481 TGATGATGATGTTCAAAACGCTGGAAGTGCCTTCTGTTCAGTGCGTTTATTAGTTGCATC 540
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 496 TGATGATGATGTTCAAAACGCTGGAAGTGTCTTCTCTTCAGTGCGTTTATTAGTTGCTTC 555
Query 541 CACGCAGGCCATAAATTTGATTGGAAAACAGGGATCTTTGATTAAGTCAATAGTAGAGAA 600
|||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 556 AACGCAGGCGATTAATTTGATTGGAAAACAAGGATCTTTGATTAAGTCTATAGTAGAGAA 615
Query 601 CTCTGGTGCATCCGTTCGTATTTTATCAGAAGAGGAAACACCGTTTTATGCTGCACAGGA 660
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 CTCTGGTGCATCAGTTCGTATTTTATCAGAAGAGGAAACACCGTTTTATGCTGCACAGGA 675
Query 661 TGAGAGGATAGTGGATTTGCAGGGGGAAGCTCTAAAGATCCTCAAAGCATTAGAAGCCAT 720
||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||||||
Sbjct 676 TGAGAGGATAGTGGATTTGCAAGGGGAAGCTTTAAAGATTCTTAAAGCATTAGAAGCCAT 735
Query 721 TGTTGGACA-CTTAAGGAAATTTCTAGTCGACCATACTGTGGTCCCTCTCTTCGAGAAGC 779
||||||||| ||| |||| |||| |||| ||||||||||| |||||||||||||||||||
Sbjct 736 TGTTGGACACCTT-AGGAGATTTTTAGTTGACCATACTGTTGTCCCTCTCTTCGAGAAGC 794
Query 780 AATATCTAGCTAGAGTCTCTCAAACTCGTCAGGAAGAACCGTTAGCTGAAAGCAAGTCAT 839
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 795 AATATCTAGCTAGGGTCTCTCAAACTCGCCAGGAAGAACCGTTAGCTGAAAGCAAGTCAT 854
Query 840 CTCTGCATACTATTTCGTCAAATGTAATCGAGCCTGATTTCTCCCTCTTAGCACGGAGGG 899
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 855 CTCTGCATACTATTTCGTCAAATCTAATGGAGCCTGATTTCTCCCTCTTAGCACGGAGGG 914
Query 900 AACCTTTGTTTCTGGATCGCGATGCTCGGGTGGAATCACGTGTTCAGCCTACGGGAGTTT 959
|||||||||||||||| |||||| |||||||||| ||||||||||||||| |||||||||
Sbjct 915 AACCTTTGTTTCTGGAGCGCGATTCTCGGGTGGACTCACGTGTTCAGCCTTCGGGAGTTT 974
Query 960 CTATCTACAGTCAGGATCCTGTACTGTCAGCCAGACACTCTCCAGGTCTTGCTCGGGTTT 1019
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 975 CTATCTACAGTCAGGATCCTGTACTGTCTGCCAGACACTCCCCAGGTCTTGCTCGGGTTT 1034
Query 1020 CTTCTGCTTTTGTGACACAGGTATCTCAAACGATGCAAATACCATTCTCCTATGCAGAGG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 CTTCTGCTTTTGTGACACAGGTATCTCAAACGATGCAAATACCATTCTCCTATGCAGAGG 1094
Query 1080 ATATCATTGGTGTAGAAGGAGCTAATATAGCCTACATCCGTCGAAGAAGCGGAGCTACGA 1139
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1095 ATATTATTGGTGTAGAAGGAGCTAATATAGCCTATATCCGTCGAAGAAGCGGAGCTACCA 1154
Query 1140 TAACCATTAAAGAGAGTCCACATCCTGATCAAATCACAGTGGAAATCAAAGGCACATCTT 1199
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1155 TAACCATTAAAGAGAGTCCGCATCCTGATCAAATCACAGTGGAAATCAAAGGCACAACTT 1214
Query 1200 CTCAAGTACAAACTGCTGAGCAACTAATTCAAGAGTTCATCAGCAATCACAAGGAACCAG 1259
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1215 CTCAAGTACAAACTGCTGAGCAACTAATTCAAGAGTTCATCATCAATCACAAGGAACCAG 1274
Query 1260 TTTCGGTTTCAGGGGGATATGCCAGAATTGACACTGGCTATGTACCTGCATATCCTCCTC 1319
||||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 1275 TTTCGGTATCAGGGGGATATGCCAGAATCGACTCTGGATATGTACCTGCATATCCTCCTC 1334
Query 1320 AGCTAAGTAACCGTCAAGAGCCGCTCTCGAACAGCTACATGGGCACAGAGACGGTGCAGT 1379
|||||||||||||||||||||||||| ||| || |||||||||||||||| |||||||||
Sbjct 1335 AGCTAAGTAACCGTCAAGAGCCGCTCCCGAGCACCTACATGGGCACAGAGCCGGTGCAGT 1394
Query 1380 ACAGACCAACAGCATACTCTCAGCTGGGGGGTCCTTCGACCTACACGCCGTCCCTGAATG 1439
||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||
Sbjct 1395 ACAGACCAACAGCATACTCTCAGCTGGGGGGTCCTTCTACCTACACACCGACCCTGACTG 1454
Query 1440 GGCAAACTTATGGTTCGGAATATAGACCAGCTTCTGATGTTGGTGGCTATAGCAGTTATA 1499
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1455 GGCAAACTTATGGTTCGGAATATAGACCAGCTTCTGATGTTGGTGGCTACAGCAGTTATA 1514
Query 1500 ATCTTTGAATTGTTTGCTGTGGTTTACGAGGTTCAGTTTATCTGCAGATTAATTTCTGTT 1559
|||||||||||| |||||||| |||| || || | ||| |||||||||||||| ||
Sbjct 1515 ATCTTTGAATTGGTTGCTGTG-TTTA--AGTTT-A-TTT----GCAGATTAATTTCTCTT 1565
Query 1560 TAGAGAAAGGCTCATTT-TATTATAATAGAGAGGGAAAAAGAACCAAGTAATAGAGAGCC 1618
||||||||||||||||| || |||||||||||||||||| |||| |||| |||||||||
Sbjct 1566 TAGAGAAAGGCTCATTTATAATATAATAGAGAGGGAAAAGGAAC-AAGTTCTAGAGAGCC 1624
Query 1619 AATGTAGTTG----AATGTGTAATGTAAATCTAGGTGCCtttttttttttgtttttcttt 1674
|||||||||| ||||||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 1625 AATGTAGTTGTTGGAATGTGTAATGTAAATCTAGGTGCCCTTTTTTTTTT-TTTTT-TT- 1681
Query 1675 cttttCATATCTCGATATATGTTACACTACGTTTCTAGTCAAATAAGAAC-TGttttttt 1733
| ||| |||||||||||| ||||||||||||| ||||||||||||| ||||||||
Sbjct 1682 C-----ATACCTCGATATATGTCACACTACGTTTCTGGTCAAATAAGAACATGTTTTTTC 1736
Query 1734 tttctttttttGTATGGATTTGTTTGAG-AGATGTTTGTCA-GAATCAGTTTTAAGAA-T 1790
|||||||||| ||||| |||||||| | ||| || | | || ||||||||||||| |
Sbjct 1737 TTTCTTTTTT-GTATGAATTTGTTT-ATCAGAAGTCAGA-ATGATTCAGTTTTAAGAAAT 1793
Query 1791 TTT 1793
|||
Sbjct 1794 TTT 1796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88704363015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5