BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492222

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G25950.1 | Symbols: VATG3 | vacuolar ATP synthase G3 | chr4:...   606    4e-173


> AT4G25950.1 | Symbols: VATG3 | vacuolar ATP synthase G3 | chr4:13173753-13174335 
REVERSE LENGTH=400
Length=400

 Score =  606 bits (328),  Expect = 4e-173
 Identities = 367/386 (95%), Gaps = 2/386 (1%)
 Strand=Plus/Plus

Query  1    GAACATAAGCCATGGATTCTTTAAGAGGCCAAGGTGGGATTCAGATGCTTTTAACTGCTG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GAACATAAGCCATGGATTCTTTAAGAGGCCAAGGTGGGATTCAGATGCTTTTAACTGCTG  60

Query  61   AACAAGAAGCCGGACGGATTGTTTCAGCTGCGAGGACCGCAAAACTAGCAAGAATGAAGC  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AACAAGAAGCCGGACGGATTGTTTCAGCTGCGAGGACCGCAAAACTAGCAAGAATGAAGC  120

Query  121  AAGCGAAAGATGAGGCTGAGAAGGAGATGGAAGAATACA-AGTCTCGATTAGAAGAAGAG  179
            ||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct  121  AAGCGAAAGATGAGGCTGAGAAGGAGATGGAAGAATACAGA-TCCCGATTAGAAGAAGAG  179

Query  180  TATCAAACTCAAGTTTCTGGGACGGATCAAGAAGCAGCTGCAAAACGTTTAGATGATGAG  239
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  180  TATCAAACTCAAGTTTCTGGGACGGATCAAGAAGCAGATGCAAAACGTTTAGATGATGAG  239

Query  240  ACAGACGCCAGGATTAAGAACCTTAAGGAATCTAGTTCAAAGGTCTCCAAAGAGATTGTA  299
            ||||| | |||||||| ||||||||||||||||||||||||||||||||| || ||||| 
Sbjct  240  ACAGATGTCAGGATTACGAACCTTAAGGAATCTAGTTCAAAGGTCTCCAAGGATATTGTC  299

Query  300  AAGATGCTCATCAAATATGTTACCACTACTGGAGCATGATTCTCACTACACCAACCTCAT  359
            |||||||||||||| ||||| |||||||||| ||||||||||||||||||||  || |||
Sbjct  300  AAGATGCTCATCAAGTATGTCACCACTACTGCAGCATGATTCTCACTACACCGCCCCCAT  359

Query  360  AATATCTTATTCTCCTCATAATAAAA  385
              |||||||||||||| |||||||||
Sbjct  360  CGTATCTTATTCTCCTGATAATAAAA  385



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18146657389


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5