BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492225
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25920.1 | Symbols: | Protein of unknown function (DUF295) ... 1585 0.0
AT4G14260.1 | Symbols: | Protein of unknown function (DUF295) ... 366 2e-100
> AT4G25920.1 | Symbols: | Protein of unknown function (DUF295)
| chr4:13165475-13166872 FORWARD LENGTH=1204
Length=1204
Score = 1585 bits (858), Expect = 0.0
Identities = 1096/1205 (91%), Gaps = 40/1205 (3%)
Strand=Plus/Plus
Query 1 ATGTCACAGCTTATAATCAACAGAATGTTCAAACCCTCTGTCTGCAAAAAATTCCTCAGA 60
|||||| |||||||||||||| |||| ||||||||||||||||||||||| |||||||||
Sbjct 1 ATGTCAAAGCTTATAATCAACCGAATATTCAAACCCTCTGTCTGCAAAAATTTCCTCAGA 60
Query 61 CAAACAAACGTTCGTCTGTTCTCATCTGCAACTCACACGAGTGGGTTGGAGTCCGATGAC 120
|| |||||||||||||||||||||||| || || | | ||
Sbjct 61 CACGCAAACGTTCGTCTGTTCTCATCTG-----CA-AC-------------T-C----AC 96
Query 121 AAGAGTAGTAAAGTGAATCAGCCCTTCTCGTCTAAACCAGCCTTCCCGTTTCTGTTGATT 180
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 ACGAGTACTAAAGTGAATCAGCCCTTCTCGTCTAAACCAGCCTTCCCGTTTCTGTTGATT 156
Query 181 GACTACATCCTTAACAACCCAAACTCTTCCTCGGATGGTCGCGTAACAACAAACGATTAC 240
||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 157 GACTACATCCTAAACAACCCAAACTCTTCCTCCGATGGTCGCGTAACAACAAACGTTTAC 216
Query 241 TGTTCCAATGAAAAGGAAGTCTTGATTAAGGACAAAGATCTCAAGGAGGAGGTCTGTGAT 300
| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 217 -GGT--AATGAAAAGGAAGTCTTGATTAAGGACAAGGATCTTAAGGAGGAGGTCTGTGAT 273
Query 301 GCGATGACTGTAGGATTTTCACGTGATGGATTGCGAGTCAAGCTTTGTGACAACTACGAC 360
||||||||||| || ||||| |||||||| ||||||||| ||||||||| |||| ||| |
Sbjct 274 GCGATGACTGTCGGGTTTTCTCGTGATGGGTTGCGAGTCGAGCTTTGTGGCAACCACGGC 333
Query 361 GATAGTTTATGTTCTCCCACCATCTTTTACAAGCCTACTGACCCCGAACTAGAAGACGTG 420
||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 334 GAT-G--TATGTTCTCCCACCATCTTTTACAAGCCTACTGACCCCGAAATAGAAGACTTG 390
Query 421 ACCGTTTATCTACCTCCTCTAGCC-ACAGGTTCCCAAATCCAAAGCCTGGCCATGTCCTC 479
|||||| |||||||||||||| || || ||||| |||||||||||||||| |||||||||
Sbjct 391 ACCGTTGATCTACCTCCTCTA-CCGACGGGTTCACAAATCCAAAGCCTGGTCATGTCCTC 449
Query 480 TTTACCTAAACGAGATAAAAATTGGGTAGTCGTTGTCAAGTTATTGGGATCTCAGTTGAG 539
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 450 TTTACCTAAACGAGACAAAAATTGGGTAGTTGTTGTCAAGTTATTGGGATCTCAGTTGAG 509
Query 540 TATGTGCAGGCCTTTTGGCAGCCGTAAATGGATCAACATCAAAACCAAGCCTCAGAATAT 599
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 510 TATGTGCAGGCCTTTTGGCAGCCGTAAATGGATCAACATCCAAACCAAGCCTCAGAATAT 569
Query 600 AAACCCTTTATCGAGCATCATGTTTTCCAAGAAAGATAAAAAGTTCTACATTCCAACTCC 659
|||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 570 AAACCCTTCATCGAGCATCATGTTTTCCAAGAAAGAGAAAAAGTTCTACGTTCCAACTCC 629
Query 660 CGGTGGCAACATCTTGTGCTATTTGGATCCCT-ATTCAGAGGACGACGACCAAATCGATT 718
||| |||||||||||||||||||||||| ||| | |||||||||||||||| ||| ||||
Sbjct 630 CGGAGGCAACATCTTGTGCTATTTGGAT-CCTCACTCAGAGGACGACGACCTAATTGATT 688
Query 719 TCCTCGACTTGGATTTTGACGATCTTCCAGAATCGGTGTTTCAAGAGTTGGCGGACGTGA 778
|| | || ||||| ||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 689 TCGTGGAATTGGAGTTTGACGATCTTCCAAAATCGGTGTTTCAAGAGTTGGCCGACGTGA 748
Query 779 GTACATGTTCTAGGACGGACCACCTAGTGGAGTCACCCACCGGCCAACTTTTCCTCGTCA 838
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 749 GTACATGTTCTAGGACAGACCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTAGTCA 808
Query 839 AGTGGTATGGCGAGGATTTCGAGGACATTGACAACTGCACACTGTATCATGTAACAAAAA 898
|||||||||| |||||||| ||||||||||||||| |||||||||| ||||||||||||
Sbjct 809 AGTGGTATGGAGAGGATTTAGAGGACATTGACAACACCACACTGTATAATGTAACAAAAA 868
Query 899 AGTTCATGGTGTTTAGAGAGGAAGAGCAACCGA---GTAAATACAGTAAGAAGATGATCT 955
||||||||||||||| ||||| |||| |||||| || |||| ||||||||||||||
Sbjct 869 AGTTCATGGTGTTTAAAGAGGGAGAGAAACCGAGTTGTGTCTACACTAAGAAGATGATCT 928
Query 956 ACACAGAAGACATTGGAGATCTTTGCATTTTTGTTGGTCATAGTGAGGCTTTCTGCGTCC 1015
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 929 ATACAGAAGACATTGGAGATCTTTGCATTTTTGTTGGACATAGTGAGGCTTTCTGCGTCC 988
Query 1016 CAGCTAGCTCATCCCCTGGACTCAAGCCTAACTGCATCTATTTTGTGGGCTATAACTTTG 1075
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 989 CGGCTAGCTCGTCCCCTGGCCTCAAGCCTAACTGCATCTATTTTGTGGGCTATAACTTTG 1048
Query 1076 GTGTTTATGATCTCACCACCAAAACTTGCACTATGTTCCTCACAGAAGATGAAAATCCAT 1135
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1049 GTGTTTATGATCTCACCACCAAAACTTGCACTATGTTCCTCACAAAAGATGATAATCCAT 1108
Query 1136 TAAGGAAATTGGAATTCCCTTACTGGCCTCCTCCGGCTTCCTCTCCAC--C-AGCTTCTA 1192
|||||||||||||||||||||||||||||||||||||||||| |||| | |||| |||
Sbjct 1109 TAAGGAAATTGGAATTCCCTTACTGGCCTCCTCCGGCTTCCTTTCCAGTACTAGCTCCTA 1168
Query 1193 ATTAA 1197
|||||
Sbjct 1169 ATTAA 1173
> AT4G14260.1 | Symbols: | Protein of unknown function (DUF295)
| chr4:8216321-8217571 REVERSE LENGTH=1140
Length=1140
Score = 366 bits (198), Expect = 2e-100
Identities = 379/462 (82%), Gaps = 29/462 (6%)
Strand=Plus/Plus
Query 718 TTCCTCGACTTGGATTTTGACGATCTTCCAGAATCGGTGTTTCAAG-AGTTGGC-GGACG 775
||| |||||||||||| ||| |||||||||| ||||||||| ||| ||||||| ||| |
Sbjct 676 TTCATCGACTTGGATTATGAAAATCTTCCAGAGTCGGTGTTT-AAGCAGTTGGCGGGA-G 733
Query 776 TGAGTACATGTTCTAGGACGGACCACCTAGTGGAGTCACCCACCGGCCAACTTTTCCTCG 835
||||| ||||||| | ||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 734 TGAGTTCATGTTCCAAGACAGATCACCTTGTGGAGTCACCCACCGGCCAACTTTTCCTCG 793
Query 836 TCAAGTGGTATGGCG-AGGATTTCGAGGACATT-G--ACAACTGCACAC-TGTATCATGT 890
||||||||| | | | |||| | |||||| || | |||| | ||| | || | | ||
Sbjct 794 TCAAGTGGT-TCGTGGAGGACGTGGAGGACCTTTGCGACAA-TACACCCATGCA-C--GT 848
Query 891 AACAAAAAAGTTCATGGTGTTTAGAG-AGGAA-GAG-CAACCGA-GTAAATACAGTAAGA 946
|||||||||||||||||||||||||| | || ||| | | || | ||| | || ||||
Sbjct 849 AACAAAAAAGTTCATGGTGTTTAGAGCA--AATGAGGCTTCTGACGAAAAGA-AG-AAGA 904
Query 947 AGATGATCTACACAGAAGACATTGGAGATCTTTGCATTTTTGTTGGTCATAGTGAGGCTT 1006
||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||
Sbjct 905 CTATGATCTACACAGAACACATTGGAGATCTTTGCATTTTTCTTGGACATAGTGAGGCTT 964
Query 1007 TCTGCGTCCCAGCTAGCT-CATCCCCTGGACTCAAGCCTAACTGCATCTATTTTGTGGGC 1065
||||| |||| ||||| | | || ||||||| |||||||||||||||||||||| |||
Sbjct 965 TCTGCATCCCGGCTAG-TACGTCGTGTGGACTCGAGCCTAACTGCATCTATTTTGTTGGC 1023
Query 1066 TATAACTTTGGTGTTTATGATCTCACCACCAAAACTTGCACTATGTTCCTCACAGAAGAT 1125
||||||||||||||||||||||||||||| |||||||| ||| || | ||| || |
Sbjct 1024 AATAACTTTGGTGTTTATGATCTCACCACCGAAACTTGCTCTACCTTT-T-ACACTAG-T 1080
Query 1126 GAAAATCCATTAAGGAAA-TTGGAATTCCCTTACTGGCCTCC 1166
| || ||| ||| ||| || | |||||||||||||||||
Sbjct 1081 GTAAGGCCACTAAAGAACGTTAGT-TTCCCTTACTGGCCTCC 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5