BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492227
Length=1301
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25900.1 | Symbols: | Galactose mutarotase-like superfamily... 1888 0.0
> AT4G25900.1 | Symbols: | Galactose mutarotase-like superfamily
protein | chr4:13161346-13163636 FORWARD LENGTH=1337
Length=1337
Score = 1888 bits (1022), Expect = 0.0
Identities = 1189/1267 (94%), Gaps = 22/1267 (2%)
Strand=Plus/Plus
Query 2 TAAGTTTCATTTCCTGTTTTTAGGCTCACTCGTTGACTTTTTTCAATTTCTTTCCTTTGG 61
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 22 TAAGTTTCATTTCCTGTTTTTAGGCTCACTCGTGGACTTTTTTTAATTTCTTTCCTTTGC 81
Query 62 CATATTTATAAAATAAGA-AGAGAG-AA-AATCTTCAATAATTTTCAACAAGCAAAGGAG 118
|||||||||||||||| | |||||| || ||| |||||||||||||||||||| |
Sbjct 82 CATATTTATAAAATAAAAGAGAGAGAAAGAATTTTCAATAATTTTCAACAAGC-----A- 135
Query 119 AGACGACTCATGATGGGGAATAAGGGAAATCTCGGATTTGTGATCTTCTTATGGGCTCTG 178
| | | ||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 136 A-A-G-TTCATGATGGGGAATAAGCGAAATCTCGGATTTGTGATCTTCTTCTGGGCTCTG 192
Query 179 GTGGTTGCAGTAGTAGCCACGGCCATCGAGCATCGTCCCATTGAGAGGACTAAAGGCATT 238
||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 193 GTGGTTGCAGTAGTAGCCACGGCCATCGAGCATCGTCGCAATGAGAGGACTAAAGGCGTC 252
Query 239 AATGGTCTTGACAAGATCATCATCCGCGACCGCCGTGGCCGATCTGCTGAGGTTTACTTG 298
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 253 AATGGTCTTGACAAGATCATCATCCGCGACCGTCGTGGCCGATCTGCTGAGGTTTACTTG 312
Query 299 TATGGAGGTCAAGTGAGTTCTTGGAAGAATGAGAAGGGAGAGGAGTTACTTGTTATGAGT 358
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 313 TATGGAGGTCAAGTCAGTTCTTGGAAAAATGAGAATGGAGAGGAGTTACTTGTTATGAGT 372
Query 359 AGCAAGGCTATATTTCAGCCTCCAACACCGATTCGTGGGGGAATTCCAGTATTGTTTCCG 418
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 373 AGCAAGGCTATATTCCAGCCTCCAACACCGATTCGTGGAGGAATTCCAGTATTGTTTCCG 432
Query 419 CAATATAGTAACACCGGTCCACTTCCCTCACATGGATTTGCAAGGCAGAGGTTCTGGGAA 478
||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 433 CAATACAGTAACACCGGTCCACTTCCCTCACATGGATTTGTAAGACAGAGGTTCTGGGAG 492
Query 479 GTTGAGGCTAAACCACCTCCTTTGCCATCAATTTCTTCTGCTCATGTTGACCTGATCCTA 538
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 493 GTTGAGACTAAACCACCTCCTTTGCCATCACTTTCTACTGCTCATGTTGACCTGATCGTA 552
Query 539 AAATCATCCAATGATGATTTGAAGATCTGGCCTCATAAGTTTGAGTACCGACTGAGAGTA 598
| |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 553 AGATCATCCAATGAGGATTTGAAGATCTGGCCGCATAAGTTTGAGTATAGACTGAGAGTA 612
Query 599 GCATTGGGACATGATGGAGATTTGACGTTGACATCTCGTGTTAAGAATTCTGATACTAAA 658
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||
Sbjct 613 GCATTGGGACATGATGGAGATTTGACGTTAACATCTCGTGTTAAGAATACTGATACAAAA 672
Query 659 CCATTTAACTTCACATTTGCTCTTCACCCCTATTTCGCTGTTTCCAATATCAGTGAAGTC 718
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 673 CCATTTAACTTCACATTTGCTCTTCACCCCTACTTCGCTGTTTCCAATATCAGTGAAATC 732
Query 719 CACGTCGAAGGATTACACAACTTGGATTATCTTGACCAACAAAAGAACAGAACACGTTTC 778
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 733 CATGTCGAAGGATTACACAACTTGGATTACCTTGACCAACAAAAGAACAGAACACGTTTC 792
Query 779 ACTGATCATGACAAAGTTATAACTTTCAATGCTCAACTTGACAGGTTGTACCTAAGCACT 838
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 ACTGATCATGAGAAGGTTATAACTTTCAATGCTCAACTTGACAGGTTGTACCTAAGCACT 852
Query 839 CCAAATAAACTAAGAATCGTAGACCACAAGAAAAAGAAGACTATTGTTGTACACAAGGAG 898
||| || ||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 853 CCAGATCAACTAAGAATCGTGGACCATAAGAAAAAGAAGACTATTGTTGTACACAAGGAG 912
Query 899 GGACAAGTTGATGCCGTGGTGTGGAATCCATGGGACAAGAAAGTGTCAGATTTGGGAGTT 958
||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 913 GGACAAGTTGATGCCGTGGTGTGGAATCCATGGGATAAGAAAGTATCCGATTTGGGAGTT 972
Query 959 GAAGACTATAAGCGTTTTGTAACGGTGGAAAGCGCGGCTGTCGAGAAACCGATCACAGTG 1018
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 973 GAAGACTATAAGCGTTTTGTAACGGTGGAAAGCGCGGCTGTCGCGAAACCGATCACAGTG 1032
Query 1019 AACCCCGGCAAAGAATGGAAAGGAATACTCCAAGTATCTGTGGTTCCTTCAAATTGGAAA 1078
|||||||||||||||||||||||||||||||| || ||||||||||| |||||| |||||
Sbjct 1033 AACCCCGGCAAAGAATGGAAAGGAATACTCCATGTTTCTGTGGTTCCATCAAATCGGAAA 1092
Query 1079 GCTTGAACCTA-AAAAGTCTTGCATTCATCATCCTCATC-TT-aaaaaaaaaaaCTTAAA 1135
|||||| |||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1093 GCTTGACCCTATAAAAGTCTTGCATTCATCATCCTCATCCTTTAAAAAAAAAAACTTAAA 1152
Query 1136 AACTGTCTTTATTAAAATATATACTTAATGTTCCCGAGAGACATCACATGGTGAACACAA 1195
| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1153 A-CTGTCTTTATTAAAGTATA--CTTAATGTTCCCGAGAGACATCACATGGTGAACACAA 1209
Query 1196 AGTTAGTTGGGTTCCAAACTGGACTCT-GACCAGTTTCATTGTTTTGTAA-T--AGTATT 1251
||||||||||||||||||||||||||| ||||||||| |||||||||||| | || |||
Sbjct 1210 AGTTAGTTGGGTTCCAAACTGGACTCTTGACCAGTTTTATTGTTTTGTAACTTTAGCATT 1269
Query 1252 CATGAAT 1258
|||||||
Sbjct 1270 CATGAAT 1276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64005694875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5