BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492228

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G25890.1 | Symbols:  | 60S acidic ribosomal protein family |...   734    0.0  


> AT4G25890.1 | Symbols:  | 60S acidic ribosomal protein family 
| chr4:13159484-13160495 REVERSE LENGTH=605
Length=605

 Score =  734 bits (397),  Expect = 0.0
 Identities = 459/489 (94%), Gaps = 3/489 (1%)
 Strand=Plus/Plus

Query  1    TTTTTCCAGAAATCTCTCACAATCGCCATCGATTTTAGCAGACATTGAAGAAGATGGGAG  60
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  50   TTTTTCCAGAAATCTCTCACTATCGCCATCGATTTTAGCAGACATTGAAGAAGATGGGAG  109

Query  61   TATTCACATTCGTGTGTAAAAATGGCGGCGGCGCGTGGTCCGCGAAGCAACACGAAGGAG  120
            ||||||||||||| || || ||||| ||||||||||||  ||||||||||||||||||||
Sbjct  110  TATTCACATTCGTATGCAAGAATGGAGGCGGCGCGTGGAGCGCGAAGCAACACGAAGGAG  169

Query  121  AACTTGAAGCTTCCGCTTCTTCTACCTACGAGCTCCAGCGTAAGCTCGTCCAAGCT-GCT  179
            |||||||| |||| ||||||||||||||||||||||||||||||||||| | || |  ||
Sbjct  170  AACTTGAATCTTCAGCTTCTTCTACCTACGAGCTCCAGCGTAAGCTCGTTC-AGGTATCT  228

Query  180  CTCTCCGCCGATTCCTCCGGTGGCGTTCAGTCTTCGTTTTCTCTTGTCTCCCCTACCTCC  239
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  229  CTCTCCGCTGATTCCTCCGGTGGCGTTCAGTCTTCGTTTTCTCTTGTCTCCCCTACCTCC  288

Query  240  GCCGTATTCCAGGTGATTGTCggtggtggtggtggtggAGGATTCGCTGCTGGAGGAGCT  299
            |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct  289  GCCGTATTCCAGGTAATTGTTGGTGGTGGTGGTGGTGGAGGATTCTCTGCTGGAGGAGCT  348

Query  300  GCCTCGGGTGGAGGTGGCGCGGGTGAATCTGCAGCTGCTCCTaaggaagatgagaagaag  359
            |||||  |||||||||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct  349  GCCTCAAGTGGAGGTGGTGCGGGTGAAGCTGCAGCTGCCCCTAAGGAAGATGAGAAGAAG  408

Query  360  aaagaagaatcagaagaggaagaaggagaCTTCGGATTTGATCTCTTTGGTTAAGATGGA  419
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct  409  AAAGAAGAATCAGAAGAGGAAGAAGGAGACTTCGGATTCGATCTCTTTGGTTAAGATTGA  468

Query  420  AATAGTATTTTGGAGGTGTTAGTTTGAGCTT-CCATTTTTGTGTGGGGTGTTTCTTCTAC  478
            |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | 
Sbjct  469  AATAGTATTTTGGAGGTGTTGGTTTGAGCTTTCCATTTTTGTGTGGGGTGTTTCTTCCAT  528

Query  479  TGTCATGTG  487
            ||||| |||
Sbjct  529  TGTCAAGTG  537



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23208175914


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5