BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492232
Length=1492
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25870.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2366 0.0
AT5G57270.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 887 0.0
> AT4G25870.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr4:13149691-13152277
REVERSE LENGTH=1513
Length=1513
Score = 2366 bits (1281), Expect = 0.0
Identities = 1431/1501 (95%), Gaps = 19/1501 (1%)
Strand=Plus/Plus
Query 1 AGGAGGATCAAATTCGACCTTTTTGAGATCTGGGTTCGGACAAAGATTCTGTCTTTCTGC 60
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 19 AGGAGGATCAAATTATACTTTTTTGAGATCTGGGTTCGGACAAAGATTCTGTCTTTCTGC 78
Query 61 A-T-TCTACCGTTTCGATTCAGCTCCAGGCAATGCCAATCTAAAAGGAGTATATGCAGAG 118
| | ||||||||||||||||||||| ||||||||||||||||||||||| | ||
Sbjct 79 ATTCTCTACCGTTTCGATTCAGCTCGAGGCAATGCCAATCTAAAAGGAG----T----AG 130
Query 119 GTGAAAAAAGATTCAATTTTTGTATGCCTATCAATTAGAAAGGAG-A-A-GGGAGGT-GT 174
||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| ||
Sbjct 131 GTGAAAAAAGATTCAATTTTTGTATGCCTATCAATTAGAAAGGAGAAGAGGGGAGGTGGT 190
Query 175 TAGATTGGTTTCAATGGGTGAGACGAAGAAGATTTTGCAAGGGCCACGTCACCACACATC 234
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 191 TAGATTGGTTTCAATGGGTGAGACGCAGAAGATTTTGCAAGGGCCACGTCACCACACATC 250
Query 235 TCTGAAGAAGCCCTTATGGCTTGTTTTGACAGTTTCAGTGACTAGCATGCTTCTCATCTG 294
||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| |||||
Sbjct 251 TCTGAAGAAGCCCTTATGGGTTGTTTTGACAGTCTCAGTGACCAGCATGCTTCTAATCTG 310
Query 295 TACTCACATGTATCCAAGACAGGGCAAGAGCTCCTCGTGTCATGGCCT-TGGTAGCACCA 353
||||||||||||||||| ||| |||||||||||||||||||| ||||| | ||||||||
Sbjct 311 TACTCACATGTATCCAAAACATGGCAAGAGCTCCTCGTGTCACGGCCTCT-ATAGCACCA 369
Query 354 GAGGCTGCGAGGATGCTCTCTCTAAGTGGCTACCTGTTCATGTCAGGAAATTCACTGATG 413
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GAGGCTGTGAGGATGCTCTCTCTAAGTGGCTACCTGTTCATGTCAGGAAATTCACTGATG 429
Query 414 AGGAGATAGCAGCTCGAGCAGTGGCCAGAGACATACTAAGAACGCCTCCCTTCATAACCG 473
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 430 AGGAGATAGCAGCTCGAGCAGTGGTTAGAGACATACTAAGAACGCCTCCCTTCATAACC- 488
Query 474 AA-AACTCCAAAATCGCTTTCTTGTTCTTGACTCCTGGTACTTTGCCATTCGAGAAGCTA 532
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 489 AATAACTCCAAAATCGCTTTCTTGTTCTTGACTCCCGGTACTTTGCCATTTGAGAAGCTC 548
Query 533 TGGGATGAATTTTTCAAGGGTCATGAAGGGAAGTTCTCGATTTATATCCACCCGTCAAAG 592
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 549 TGGGATGAATTTTTCAAGGGTCATGAAGGGAAATTCTCGATATATATCCACCCGTCAAAG 608
Query 593 GAACGACCAGTTCACATCAGCCGTCACTTTTCTGATCGTGAGATCCACAGTGATGAGGTC 652
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 609 GAACGACCAGTTCACATCAGCCGTCACTTTTCTGATCGAGAGATTCACAGTGATGAGGTT 668
Query 653 ACTTGGGGAAGGATTTCTATGGTTGATGCCGAGAAGCGGTTACTGGTTAGCGCTCTTGAA 712
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 669 ACTTGGGGAAGGATTTCTATGGTTGATGCTGAGAAGCGGTTACTGGTTAGCGCTCTTGAA 728
Query 713 GATCCTGACAACCAACACTTTGTTCTTCTTTCAGAGAGTTGTATTCCATTGCATACTTTT 772
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 729 GATCCTGACAACCAACACTTTGTTCTTGTTTCAGAGAGTTGTATTCCGTTGCATACTTTT 788
Query 773 GACTACACTTATAGATATTTGCTGTACTCCAGTGTTAGCTTCATTGAGAGTTTTGTAGAT 832
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||
Sbjct 789 GACTACACTTATAGATATTTGTTGTACTCCAACGTTAGCTTCATTGAGAGTTTTGTGGAT 848
Query 833 CCTGGTCCACATGGGACCGGTAGACATATGGAACACATGCTACCAGAAATCGCCAGGGAA 892
|| ||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 849 CCGGGTCCACATGGAACCGGTAGACATATGGAACACATGTTACCAGAAATCGCCAAGGAA 908
Query 893 GATTTTAGAAAGGGTGCTCAGTGGTTCACAATGAAGCGACAACACGCGATTATAGTGATG 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 GATTTTAGAAAGGGTGCTCAGTGGTTCACAATGAAGCGACAACACGCGATTATAGTGATG 968
Query 953 GCCGATGGTCTTTACTACTCAAAATTCCGCGAGTATTGTGGACCTGGAATAGAGGCCGAC 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 GCCGATGGTCTTTACTACTCAAAATTCCGCGAGTATTGTGGACCTGGAATAGAGGCCGAC 1028
Query 1013 AAGAACTGCATTTCTGATGAACATTACTTGCCAACATTTTTCAATATGATTGATCCCATG 1072
|||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1029 AAGAACTGCATTGCCGATGAACATTACTTGCCAACATTCTTCAATATGATTGATCCCATG 1088
Query 1073 GGGATCTCAAACTGGTCAGTGACGTATGTTGATTGGTCTGAACGAAGGTGGCATCCAAAG 1132
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1089 GGGATCTCAAATTGGTCAGTGACGTTTGTTGATTGGTCTGAACGAAGGTGGCATCCAAAG 1148
Query 1133 ACATACGGAGGAAATGAGATTTCACTAGAGTTCATGAAAAATGTCACGTCCGAGGACATG 1192
|||||||||||||| ||||||||| |||| || |||||||||||||| ||||||||||||
Sbjct 1149 ACATACGGAGGAAACGAGATTTCATTAGAATTTATGAAAAATGTCACATCCGAGGACATG 1208
Query 1193 AGTGTACACGTCACCAGTGTGGGCAAGCATGGAGATGAGCTGCATTGGCCTTGTACATGG 1252
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1209 AGTGTACATGTCACCAGTGTGGGGAAGCATGGAGATGAGCTGCATTGGCCTTGTACATGG 1268
Query 1253 AACGGGATTACACGGCCTTGTTATCTATTTGCAAGAAAGTTCCATCCTGATACTCTCGAC 1312
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1269 AACGGGATTAAACGGCCTTGCTATCTATTTGCAAGAAAGTTCCATCCTGATACTCTCGAC 1328
Query 1313 ACATTGGTCAACCTCTTCCCAAACTACACAAGCACAGCTGTCTGAGAGAGGATTCTTGAA 1372
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1329 ACATTGGTCAACCTCTTCCCAAACTACACAAACACAGCTGTCTGAGAGAGGATTCTTGAA 1388
Query 1373 CCAAA-ACACACATTCTTGGACCTAATTGTGTTCCAAATATGTCTCAGAGATGGATATTT 1431
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 CCAAACACACACATTCTTGGACCTAATTGTGTTCCAAATATGTCTCAGAGATGGATATTT 1448
Query 1432 TAGATACTGTAAATTTTCTGAAGAAACTGAAATTATTCTTGGAATTTGATGTTTCTTGAT 1491
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1449 TAGATACTGTAAATTTTCTGAAGAAACTGAAATTATTCTTGGATTTTGATGTTTCTTGAT 1508
Query 1492 G 1492
|
Sbjct 1509 G 1509
> AT5G57270.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr5:23200614-23203792
REVERSE LENGTH=1907
Length=1907
Score = 887 bits (480), Expect = 0.0
Identities = 885/1072 (83%), Gaps = 61/1072 (6%)
Strand=Plus/Plus
Query 353 AGAGGCTG-CGAGGATGCTCTCTCTAAG-TGGCTACCTGTTCATGTCAGGAAATTCACTG 410
|||||||| | | | ||| |||||| | ||||| |||||||||||||||||||||||||
Sbjct 533 AGAGGCTGTC-AAGCTGCGCTCTCT-GGATGGCTTCCTGTTCATGTCAGGAAATTCACTG 590
Query 411 ATG-AGGAGATAGCAGCTCGAGCAGTGGCCAGAGACATACTAAGAAC-GCCTCCCT--TC 466
||| || || |||||||||||| ||| || ||| ||||| || || ||| ||| ||
Sbjct 591 ATGAAGAAG-TAGCAGCTCGAGTTGTGATCAAAGATATACTGAG-ACTACCT-CCTGCTC 647
Query 467 ATAACCG-AAAACTCCAAAATCGCTTTCT-TGTTCTTGACTCCTGGTACTTTGCCATTCG 524
|||||| ||| || ||||||||||| | |||| ||||||||||||||||||||||| |
Sbjct 648 -TAACCGCTAAA-TCGAAAATCGCTTT-TATGTTTTTGACTCCTGGTACTTTGCCATTTG 704
Query 525 AGAAGCTATGGGATGAA-TTTTTCAAGGGTCATGAAGGGAAG-TTCTCGATTTATATCCA 582
||||||| |||||| || |||||| ||||||| ||| ||||| ||||| ||||| |||||
Sbjct 705 AGAAGCTTTGGGAT-AAGTTTTTCCAGGGTCAAGAA-GGAAGATTCTCTATTTACATCCA 762
Query 583 CCCGTCAAAGG-AACGACCAGTTCACATCAGCCGTCACTTTTCTGATCGTGAGATCCACA 641
||| || ||| ||||||||||||||| |||||||||||||| || ||||| || || |
Sbjct 763 CCCTTC-CAGGTTACGACCAGTTCACATTAGCCGTCACTTTTCAGACCGTGAAATTCATA 821
Query 642 GTGATGAGGTCACTTGGGGAAGGATTTCTATGGTTGATGCCGAGA-AGCGG-TTACTGGT 699
||||| | |||||||||||||||||||||||||||||||| |||| | ||| || || |
Sbjct 822 GTGATCATGTCACTTGGGGAAGGATTTCTATGGTTGATGCTGAGAGA-CGGCTT-CTAGC 879
Query 700 TAGCGCTCTTGAAGATCCTGACAACCAACACTTTGTTCTTCTTTCAGAGAGTTGTATTCC 759
| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||
Sbjct 880 AAATGCTCTTGAAGATCCTGATAACCAGCACTTTGTTCTTCTTTCAGAAAGTTGTATACC 939
Query 760 ATTGCATACTTTTGACTACACTTATAGATATTTGCTGTACTCCAGTGTTAGCTTCATTGA 819
|||||||| ||||||||||| ||| |||||||| || || | | ||| |||||||||||
Sbjct 940 GTTGCATACATTTGACTACACCTATCGATATTTGATGCACGCAAATGTCAGCTTCATTGA 999
Query 820 GAGTTTTGTAG-ATCCTGGTCCACATGGGACCGGTAGACATATGGAACACATGCTACCAG 878
||||||| || ||| |||||| |||||||| || ||||| ||||| |||||| |||| |
Sbjct 1000 TAGTTTTG-AGGATCTTGGTCCTCATGGGACTGGCAGACACATGGATCACATGTTACCTG 1058
Query 879 AAATCGCCAGGG-AAGATTTTAGAAAGGGTGCTCAGTGGTTCACAATGAAGCGACAACAC 937
| ||| ||| || ||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 1059 AGATC-CCAAGGCAAGATTTCAGAAAGGGTGCACAGTGGTTCACAATGAAGCGTCAACAC 1117
Query 938 GC-GATTATAGTGATGGCCGATGGTCTTTACTACTCAAAATTCCGCGAGTATTGTGGACC 996
|| | | ||||||||||| |||||||| |||||||| |||||||| |||||||| ||||
Sbjct 1118 GCTG-TAATAGTGATGGCTGATGGTCTCTACTACTCGAAATTCCGGGAGTATTGCAGACC 1176
Query 997 TGGAATAGAGGCCGACAAGAACTGCATTTCTGATGAACATTACTTGCCAACATT-TTTCA 1055
|||| |||| || ||||||||||||| | |||||||||||| |||||||||| |||||
Sbjct 1177 TGGAGTAGAAGCAAACAAGAACTGCATCGCGGATGAACATTACCTGCCAACATTCTTTCA 1236
Query 1056 ATATGATTGATCCCATGG-GGA-TCTCAAACTGGTCAGTGACGTATGTTGATTGGTCTGA 1113
|||| ||||||| ||| ||| |||| ||||||||||| || |||||||||||||||||
Sbjct 1237 -TATGCTTGATCC--TGGAGGAATCTCGAACTGGTCAGTCACATATGTTGATTGGTCTGA 1293
Query 1114 ACGAAGGTGGCATCCAAAGACATACGGAGGAAATGAGAT-T-TCACT-AGAGTTCATGAA 1170
|| || ||||||||||||||||| ||| | | ||| | ||||| | || || ||||
Sbjct 1294 GCGTAGATGGCATCCAAAGACATATAGAGCAC--GCGATGTCTCACTCA-AGCTCTTGAA 1350
Query 1171 AAATGTCACGTCCGAGGACATGAGTGTACACGTCACCAGTGTGGGCAAGCATGGAGATGA 1230
|||| ||||||| || |||||||||||||| || || || || ||||||| ||||| ||
Sbjct 1351 AAATATCACGTCTGACGACATGAGTGTACATGTAACAAGCGTTGGCAAGCGCGGAGAAGA 1410
Query 1231 GCTGCATTGGCCTTGTACATGGAACGGGA-TTACACGGCCTTGTTATCTATTTGCAAGAA 1289
||||| |||||||||||||||||| |||| ||| ||| || ||||||||||||||||| |
Sbjct 1411 GCTGCGTTGGCCTTGTACATGGAA-GGGAATTAGACGACCATGTTATCTATTTGCAAGGA 1469
Query 1290 AG-TTC-CATCCTGATACTCTCGACACATTGGTCA-ACCTCTTCCCAAACTACACAAGCA 1346
|| ||| | || ||| |||| ||| | |||||| || |||| ||||| ||||||||||
Sbjct 1470 AGCTTCAC-TCA-GATGCTCTTTACAAACTGGTCAGAC-TCTTTCCAAATTACACAAGCA 1526
Query 1347 CAGCTG-TCTGAG--AGAGG-A--TTCTTGAACCAAAAC-ACAC-ATTCTTG 1390
||| || ||| || |||| | |||||||| | |||| | || |||||||
Sbjct 1527 CAG-TGGTCTAAGCCAGAGACAAATTCTTGAAACTAAACCATACGATTCTTG 1577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73593998970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5