BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492235
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25840.1 | Symbols: GPP1 | glycerol-3-phosphatase 1 | chr4:1... 1530 0.0
> AT4G25840.1 | Symbols: GPP1 | glycerol-3-phosphatase 1 | chr4:13139015-13140960
FORWARD LENGTH=1149
Length=1149
Score = 1530 bits (828), Expect = 0.0
Identities = 1059/1161 (91%), Gaps = 53/1161 (5%)
Strand=Plus/Plus
Query 1 GTCGTCAAACTATGTTAACAACTCCGACAAGATTCGTTGCTCTAATAAGAATCCCATTCC 60
||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 GTCGTTAAAGTATGTTAACAACTCCGACAAGATTCGTTGCTC---TAAGAATCCCATTCC 57
Query 61 GATCTTCCATTAAGTTTCCGATCTCCATTGCTCACTTTCCCAAAGGTTATCCTCAGAAAA 120
||||||||| |||| |||||||||||||||||| || |||||||| || ||||| ||||
Sbjct 58 GATCTTCCAATAAGATTCCGATCTCCATTGCTCCCTCTCCCAAAGTTTTTCCTCGGAAAC 117
Query 121 CAGTTATCAGAGCTT-TATCAAATCTCC-A-----A---ACGATGTCGACCCCTGACGCC 170
|||||||||||| || | ||| ||||| | | |||||||||||||||| ||||
Sbjct 118 CAGTTATCAGAG-TTCCAGCAAGTCTCCGATTTGTAGCGACGATGTCGACCCCTGCCGCC 176
Query 171 GCCGTCAGCGCCA----C-C-GTCACCGACGCCGGAAGAGGATCGATCACTCACGTCATA 224
||||||| ||||| | | |||||||| ||||| ||||||||||||||||||||||||
Sbjct 177 GCCGTCAACGCCACCGTCACAGTCACCGATGCCGGCAGAGGATCGATCACTCACGTCATA 236
Query 225 TTCGACATGGATGGTCTCCTTCTCGACACGGAGAAGTTTTACACGGAGGTCCAGGAAAAG 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TTCGACATGGATGGTCTCCTTCTCGACACGGAGAAGTTTTACACGGAGGTCCAGGAAAAG 296
Query 285 ATACTTGCTAGATACAATAAAACATTTGATTGGTCTTTGAAGGCAAAGATGATGGGGAGA 344
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 297 ATACTTGCTAGATACAATAAAACATTTGATTGGTCTTTGAAAGCAAAGATGATGGGGAGA 356
Query 345 AAAGCGATCGAAGCTGCCAGGCTTTTCGTTGACGAAAGTGGAATCAGTGACTCTCTTTCT 404
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 AAAGCCATAGAAGCTGCAAGGCTTTTCGTTGACGAAAGTGGAATCAGTGACTCTCTTTCT 416
Query 405 GCTGAAGAGTTCATTGTAGAAAGAGAGTCAATGTTGCAAGACCTCTTCCCCACAAGTGAC 464
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GCTGAAGATTTCATTGTAGAAAGAGAGTCAATGTTGCAAGACCTCTTCCCCACAAGTGAC 476
Query 465 CTTATGCCAGGAGCTAGCCGGCTTCTCAGACATCTCCATGGAAAAGGAATTCCAATTTGT 524
|| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 477 CTAATGCCAGGAGCTAGCCGGCTTCTTAGACATCTCCATGGGAAAGGAATTCCAATATGT 536
Query 525 ATAGCCACAGGTACACACACACGACATTTTGATCTTAAAACACAAAGACACCGTGAGCTG 584
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ATAGCCACAGGTACACATACACGACATTTTGATCTTAAAACACAAAGACACCGTGAGCTT 596
Query 585 TTTTCG-TTGATGCATCACGTAGTGCGGGGGGATGACCCAGAGGTAAAGCAAGGGAAGCC 643
|||||| || |||||||||||||| |||||||||||||||||||| ||| ||||||||||
Sbjct 597 TTTTCGCTT-ATGCATCACGTAGTACGGGGGGATGACCCAGAGGTGAAGGAAGGGAAGCC 655
Query 644 CGCTCCAGACGGCTTTCTTGCTGCATCCAGGAGATTTGAGGACGGTCCTGTAGATCCACA 703
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CGCGCCAGACGGCTTTCTTGCTGCATCCAGGAGATTTGAGGACGGTCCTGTAGATCCAC- 714
Query 704 G-AAGGTTCTCGTGTTTGAAGATGCGCCTTCTGGAGTCCAGGCAGCTAAAAATGCGGGAA 762
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 715 GCAAGGTTCTCGTGTTTGAAGATGCGCCTTCTGGAGTCCAGGCAGCTAAAAACGCCGGAA 774
Query 763 TGAATGTGATAATGGTACCGGATCCAAGATTAGATAAGTCTTACTGCAATGTTGCGGACC 822
||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||| ||||
Sbjct 775 TGAATGTAATAATGGTACCGGATTCAAGGTTAGATAAGTCCTACTGCAATGTTGCAGACC 834
Query 823 AAGTTCTGGCCTCTTTGCTAGATTTCAAACCAGAGGAATGGGGCTTACCTTCCTTCCAGG 882
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AAGTTCTGGCCTCTCTGCTAGATTTCAAACCAGAGGAATGGGGCTTACCTTCCTTCCAGG 894
Query 883 ATTCACACAACTAAAACCACAAAATCTTTCAGGGCAACGTTATCCTCAAGCTAACGATAC 942
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 895 ATTCACACAACTAAAACAACAAAG-CTTTCAGGGCAACGTTATCCTCAAGCTAACGATAC 953
Query 943 TTGACTCGTTGACGACTTTGGTTC---A-GCCTCTGTACCCTATACGAGAAAGATCATTG 998
|||||||||| | |||||| ||| | |||||| ||| ||||||||||||||| ||||
Sbjct 954 TTGACTCGTT-A--ACTTTGATTCTTTAAGCCTCT-TACGCTATACGAGAAAGATTATTG 1009
Query 999 AAAATTATAGATTCTTATTGGGGTAATTTAAAACAATATATTTATGTTCGTGATTTGTT- 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 CAAATTATAGATTCTTATTGGGGTAATTTAAAACAATATATTTATGTTCGTGATTTGTTT 1069
Query 1058 ----G-T--A--A-TT-GT--T----ATCCAGACCGTTAAGTGTGACTTTGGTGAGAAGG 1100
| | | | || || | |||||||||||||||||||||||||||||||| |
Sbjct 1070 TCTTGATTCATGAATTTGTAATTGTTATCCAGACCGTTAAGTGTGACTTTGGTGAGAATG 1129
Query 1101 ATATGGGA-TCGATTGTTGTG 1120
|||| || | ||||||||||
Sbjct 1130 ATATTAGAAT-GATTGTTGTG 1149
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54919396230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5