BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492241
Length=770
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25790.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 1168 0.0
AT5G57625.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 368 4e-101
> AT4G25790.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr4:13122152-13123347 REVERSE LENGTH=786
Length=786
Score = 1168 bits (632), Expect = 0.0
Identities = 739/787 (94%), Gaps = 22/787 (3%)
Strand=Plus/Plus
Query 1 TTTTCTACCACCATCCAAAACGAAATCTTTGGAG-CA----A-GAA-AACAA-AGATGGC 52
||||||||||||||||||||| |||||||||||| || | ||| || || |||||||
Sbjct 4 TTTTCTACCACCATCCAAAACAAAATCTTTGGAGCCACTCCACGAAGAA-AACAGATGGC 62
Query 53 GACCACAACATCAACCCAAGCCACAGTTTTCGCAATCGCCCTTTTCTTGGTCGCCATCCA 112
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 63 GACCACAACATCAACCCAAGCCATAGTTTTCGCAATCGCCCTTTTCTTGGTCGCCATCCA 122
Query 113 AGCCGTTCATGCAGACTATT------ATCGTCCACGGCTACCTACAAACCCGAGCCCTCC 166
|||||||||||||||||||| | || |||| || ||||| || ||||||||||||
Sbjct 123 AGCCGTTCATGCAGACTATTACCGGCACCGCCCACAGCGACCTATAACCCCGAGCCCTCC 182
Query 167 TCCCTACGTCGCAAAGCCCAAGCCGCTCCCAACTCCCAGCCCCAAACCTATCCTCTATCA 226
||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 183 TCCCTACGTTGCAAAGCCCCAGCCGCTCCCAACTCCCAGCCCCAAACCTATCCTTTATCA 242
Query 227 TCCTCCTCCCACATACCAACCACCCACGGGCTCGTTCGAACAACAATTTCTTGATCCACA 286
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GCCTCCTCCCACATACCAACCACCCACGGGCTCGTTCGAACAACAATTTCTTGATCCACA 302
Query 287 TAACACTGTCCGAGGCAATCTAGGTCTGCCTCCATTGGTGTGGGACGTAAAGATCGCAAG 346
||| |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 303 TAATACTGTCCGAGGCGGTCTAGGTTTGCCTCCACTGGTGTGGGACGTAAAGATCGCAAG 362
Query 347 CTATGCAACATGGTGGGCTAACCAGAGGCGATACGACTGCTCCTTAACCCATTCGACCGG 406
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 363 CTATGCAACATGGTGGGCTAACCAGAGGAGATACGACTGCTCCTTAACCCACTCGACCGG 422
Query 407 CCCATACGGTGAGAACTTGTTCTGGGGAAGTGGCTCAGACTTTACATCGACTTTCGCAGT 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 CCCATACGGTGAGAACTTGTTCTGGGGAAGTGGCTCAGACTTTACATCGACTTTCGCAGT 482
Query 467 GGAGTCATGGACCGTGGAGGCTAAGTCCTACAACCACATGACCAACACGTGTGAAGGAGA 526
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GGAGTCATGGACTGTGGAGGCTAAGTCCTACAACCACATGACCAACACGTGTGAAGGAGA 542
Query 527 TGGTATGTGTGGTCACTACACTCAGATCGTGTGGCGTGAAACCAGGCGCCTAGGTTGCGC 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TGGTATGTGTGGTCACTACACTCAGATCGTGTGGCGTGAAACCAGGCGCCTAGGTTGCGC 602
Query 587 TCGAGTTGTCTGCGAGAACGGCGCAGGTGTTTTCATCACTTGCAACTACGACCCTCCGGG 646
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 603 TAGAGTTGTCTGCGAGAACGGCGCAGGAGTTTTCATCACTTGCAACTACGACCCTCCGGG 662
Query 647 TAACTACGTTGGGGAGAAGCCTTACTAACTTGGTCTAACACGTT-GTT-TAAATTAACGT 704
||||||||||||||||||||||||||||||| |||||||||||| ||| | |||| |
Sbjct 663 TAACTACGTTGGGGAGAAGCCTTACTAACTTTGTCTAACACGTTAGTTGTT--TTAAA-T 719
Query 705 TA-CGTTTGGTGATTTCTTAATCTATGTTTTTATTCTTCTTGACTTTTGTTTCTTTTTAA 763
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TAACGTT-GGTGATTTCTTAATCTATGTTTTTATTCTTCTTGACTTTTGTTTCTTTTAAA 778
Query 764 ACTTATC 770
|||||||
Sbjct 779 ACTTATC 785
> AT5G57625.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr5:23337850-23338807 FORWARD LENGTH=869
Length=869
Score = 368 bits (199), Expect = 4e-101
Identities = 343/411 (83%), Gaps = 16/411 (4%)
Strand=Plus/Plus
Query 272 ATTTCTTGATCCACATAACACTGTCCGAG-GC-AATCTAGGTCTGCCTCCATTGGTGTGG 329
||| ||||||||||||||| || | || | | | |||||| ||||||||||| | |||
Sbjct 237 ATTCCTTGATCCACATAACGCTCTTCG-GTCCGGA-CTAGGTTTGCCTCCATTGATTTGG 294
Query 330 GAC-GTAAAGATCGCAAGCTATGCAACATGGTGGGCTAACCAGAGGCGATACGACTGCTC 388
||| ||||| | || ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 295 GACGGTAAA-CTAGCGAGCTACGCAACATGGTGGGCTAACCAGAGGCGTTACGACTGCTC 353
Query 389 CTTAACCCATTCGACCGGCCCATACGGTGAGAACTTGTTCTGGGGAAGTGGCTC-AGACT 447
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 354 CTTAACCCATTCCACCGGCCCATACGGTGAGAACTTGTTCTGGGGAAGCGGCTCGAG-CT 412
Query 448 TTACATC-GACTTTCGCAGTGGAGTCATGGACCGTGGA-GGCTAAG-TCCTACAACCACA 504
|| | | |||||| ||| ||||||||| ||| || || ||| || ||||||||||
Sbjct 413 GGGCACCAGG-TTTCGCGGTGCAGTCATGGATCGTTGAAGG--AAGGTCATACAACCACA 469
Query 505 TGACCAACACGTGTGAAGGA-GATGGTATGTGTGGTCACTACACTCAGATCGTGTGGCGT 563
|||||| ||||||| ||| | ||| ||||||||||||||||||||||| ||||||||
Sbjct 470 ACACCAACTCGTGTGACGGAAG-TGGAATGTGTGGTCACTACACTCAGATGGTGTGGCGG 528
Query 564 GAAACCAGGCGCCTAGGTTGCGCTCGAGTTGTCTGCGAGAACGGCGCAGGTGTTTTCATC 623
|| |||| | || || ||||| || || || || |||||||| || || |||||||||
Sbjct 529 GACACCAAAAGGCTCGGATGCGCACGTGTGGTGTGTGAGAACGGTGCCGGAGTTTTCATC 588
Query 624 ACTTGCAACTACGACCCTCCGGGTAACTACGTTGGGGAGAAGCCTTACTAA 674
||||| ||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 589 ACTTGTAACTACGACCCACCGGGTAACTACGTTGGCGAGAAGCCATACTAA 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37424439515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5