BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492242
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25780.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 1378 0.0
> AT4G25780.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr4:13121068-13121955 FORWARD LENGTH=888
Length=888
Score = 1378 bits (746), Expect = 0.0
Identities = 829/868 (96%), Gaps = 10/868 (1%)
Strand=Plus/Plus
Query 1 AGCACCTACAAAACAATATAATCTCAGAAAAGAGAGAGGATGAGCTCATCCTATTTACGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGCACCTACAAAACAATATAATCTCAGAAAAGAGAGAGGATGAGCTCATCCTATTTACGA 60
Query 61 GTAATATTACTCTTAGGTGCCCTTAATGTCGTTGTTTCCTTATCAATAACCAAGTCATTA 120
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct 61 GTAATATTACTCTTAGGTGCCCTTAATGTCGTCGTTTCTTTATCAATAACCAATTCTTTA 120
Query 121 ATAACCAAATCTGCAACCCTCGGTCAGGTGTTCCGAATCTGTAAGAATTTGTGTCCGGGA 180
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATAACCAAATCAGCAACACTCGGTCAGGTGTTCCGAATCTGTAAGAATTTGTGTCCGGGA 180
Query 181 TGTGACCACGACTCCTTGCAGTTCTTGTTCCGACACAACCTGGTCCGTGCCGCAAGATTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGTGACCACGACTCCTTGCAGTTCTTGTTCCGACACAACCTGGTCCGTGCCGCAAGATTC 240
Query 241 GAACCTCCTTTGATATGGGACCGCAGACTCCAGAACTACGCCCAAGGGTGGGCTAATCAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAACCTCCTTTGATATGGGACCGCAGACTCCAGAACTACGCCCAAGGGTGGGCTAATCAA 300
Query 301 AGAAGGGGAGATTGTGCTTTGAGACACTCTTTCTCGAACGGAGAGTTTAATCTCGGCGAG 360
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 301 AGAAGGGGAGATTGTGCTTTGAGACACTCTGTCTCAAACGGAGAGTTTAATCTCGGCGAG 360
Query 361 AACATCTACTGGGGATACGGCGCCAACTGGTCTCCGGCCGATGCGGTGGTTGCATGGGCC 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 AACATCTACTGGGGATACGGCGCCAACTGGTCTCCGGCCGACGCGGTGGTTGCATGGGCC 420
Query 421 AGCGAGAAGAGGTTTTATCATTACGGCTCCAACACGTGCGACCCTGGTCAGATGTGTGGC 480
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 421 AGCGAGAAGAGGTTTTATCATTACGGCTCCAACACGTGCGACGCTGGTCAGATGTGTGGT 480
Query 481 CATTACACACAGATTGTGTGGAAGAACACGAGGAGGGTCGGGTGTGCACGTGTTGTGTGC 540
||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||||
Sbjct 481 CATTACACACAGATTGTGTGGAAGAGCACTAGGAGGGTCGGATGTGCACGTGTGGTGTGC 540
Query 541 AACAATGGTGGAATCTTCATGACTTGCAACTATGATCCTCCCGGCAACTACATCGGCCAG 600
|||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 541 GACAATGGTGGGATCTTCATGACTTGTAACTATGATCCTCCCGGTAACTACATCGGCCAG 600
Query 601 AAACCCTATTAATTGATCATCATTTATCTATTAATTAAAAATTCTCCAAATTA--GTCAT 658
|||||||||||||| ||||||||||||||||||| ||| ||||||||| || |||||
Sbjct 601 AAACCCTATTAATTTATCATCATTTATCTATTAA--AAA--TTCTCCAAAATAAAGTCAT 656
Query 659 -TT--TA-TTTTTTAGAAATTATGATGACTTTTTAAAGGAGATTAGGTGGGTGTATTTGT 714
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CTTACTAATTTTTTAGAAATTATGATGACTTTTTAAAGGAGATTAGGTGGGTGTATTTGT 716
Query 715 GTATTTTACTAGAAAATAGATGTATTTGTGGGGTTTATGATACTGATTATGTATCTTGAT 774
||||||||||||||||||||| ||||||||||| || ||||||| |||||||||||||||
Sbjct 717 GTATTTTACTAGAAAATAGATCTATTTGTGGGGGTTGTGATACTAATTATGTATCTTGAT 776
Query 775 TACTTTAATTGATGGTTGTAATTGCATTAACGGTTATTTATATATCCGTAAGAATGCCCA 834
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 777 TATTTTAATTGATGGTTGTAATTGCATCAACGGTTATTTATATATCCGTAAGAATGCCCA 836
Query 835 GTATACAAGAATATATAAAATATGAAAA 862
|| |||||||||||||||||||| ||||
Sbjct 837 GTGTACAAGAATATATAAAATATAAAAA 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42045981039
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5