BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492243
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25770.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2579 0.0
> AT4G25770.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:13117525-13120114 REVERSE LENGTH=1685
Length=1685
Score = 2579 bits (1396), Expect = 0.0
Identities = 1593/1687 (94%), Gaps = 18/1687 (1%)
Strand=Plus/Plus
Query 1 ACTGTTGCTTAGCGCCTCCGCAAAAACCGCAAATGGTAAGGCTTCTTCGCCGGGAAAGTT 60
||||||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||
Sbjct 1 ACTGTTGCTTAGCGCCTCCGCAAAACCCGCAAATTGTAACACTTCTTCGCCGGAAAAGTT 60
Query 61 AAGCGACTTGTCATCATCACTTCGATAGGCAGGAAGGATACTGTACTTCCTTCTTATTGC 120
||||||||||||||||||| || | ||| |||||| |||| |||||||||||||||
Sbjct 61 AAGCGACTTGTCATCATCAGTTTGCTAGTCAGGAA-GATA----ACTTCCTTCTTATTGT 115
Query 121 G-TCCTTTTACTTCCACATGATCGCGTCCTTCTCCAGATTCCAAATCTCAATCCCCGATT 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 GTTCCTTTTACTTCCACATGATCGCGTCCTTCTCCAGATTCCAAATCTCAATCCCCGATT 175
Query 180 TGATTCCGTCTTCACCGCGATTTCTTCGGCCTAGTCAACACCAGTTCCGTTTCGGATTAT 239
||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct 176 TGATTCCGTCTTCACCGCGATTTCTTCCGCCTAGTCAAAACCAGTTCCGTTTCAGATTAT 235
Query 240 ACCTTCGATTTCCCGCTCAACCTAAGAATCTC-GATCAAATGGAGTGGATGAACCGCCTT 298
|||||| |||||| |||||||||||||||||| | |||||||||||||||||| || |||
Sbjct 236 ACCTTCAATTTCCAGCTCAACCTAAGAATCTCTG-TCAAATGGAGTGGATGAATCGTCTT 294
Query 299 GGAATCGGTTGCTTTTCGGCGAATCGAAGCAAAAGGGAGCTGAAGACGGAGATCGATAAC 358
||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||| |||
Sbjct 295 GGAATCGGTTGCTTTGCGGCGAATCGAAGCAAAAGAGAGCTGACGACGGAGATCGACAAC 354
Query 359 GGCGGAGAGGA-TTTCTTCGATGCGGATGTTATGGAGTCTGCTGAGAAGCCGGATCATTT 417
|||||||| || ||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 355 GGCGGAGAAGACTTT-TTCGATGCGGATGTTATGGAGTCTGCGGAGAAGCCTGATCATTT 413
Query 418 GGTTGTCATGGTTAACGGTATCGTTGGCAGTGCGGCGGATTGGAAATATGCGGCGGAGCA 477
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GGTGGTCATGGTTAACGGAATCGTTGGCAGTGCGGCGGATTGGAAATATGCGGCGGAGCA 473
Query 478 GTTCGTGAAGAAGTTCCCGGACAAAGTACTTGTGCACCGTAGCGAGAGCAATAGTGCAAC 537
||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 474 GTTCGTGAAGAAGTTCCCGGATAAAGTACTAGTGCACCGTAGCGAGAGTAATAGTGCAAC 533
Query 538 GTTGACGTTTGATGGTGTTGATAAAATGGGTGAAAGACTAGCTAATGAGGTTTTGGCTGT 597
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 534 GTTGACATTTGATGGTGTTGATAAAATGGGTGAAAGGCTAGCTAATGAGGTTTTGGGTGT 593
Query 598 TGTTAAGCATAGAAGTGGGCTGAAGAAGATCTCTTTTGTGGCTCATTCATTAGGTGGTCT 657
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 594 TGTTAAGCATAGAAGTGGGCTGAAGAAGATATCTTTTGTGGCTCATTCATTAGGAGGTCT 653
Query 658 TGTTGCAAGGTATGCCGTAGGGAAGCTCTATGAACTGCGTGTCGAAGCCGACTCTTTGGA 717
||||||||| |||||| |||||||||||||||||| || | |||| ||||||| ||||
Sbjct 654 TGTTGCAAGATATGCCATAGGGAAGCTCTATGAACAGCCAGGGGAAGTCGACTCTCTGGA 713
Query 718 TTCTCCTTTGAAGGAGAGGAGCACAAGAGGAGGCGAAATTGCTGGGTTAGAACCTATGAA 777
||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 714 CTCTCCTTCGAAGGAGAAGAGCGCAAGAGGAGGCGAAATTGCTGGGTTAGAACCTATGAA 773
Query 778 CTTTATAACTTTCGCAACGCCTCATCTTGGTTCAAGAGGACATAGACAGTTCCCGATTCT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CTTTATAACTTTCGCAACGCCTCATCTTGGTTCAAGAGGACATAGACAGTTCCCGATTCT 833
Query 838 TTGTGGCCTTCCGTTTCTTGAAAGGACAGCCTCCCAAACTGCACATTTGGCTGCTGGGAG 897
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 834 TTGTGGCCTTCCGTTTCTTGAAAGAACAGCATCCCAAACTGCACATTTGGCTGCTGGGAG 893
Query 898 GACCGGAAAGCATTTATTTCTGGTGGACAACGATGATGGAAATGCTCCACTTCTTATCCG 957
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GACCGGAAAGCATTTGTTTCTGGTGGACAACGATGATGGAAATGCTCCACTTCTTATCCG 953
Query 958 GATGGCTACAGATTCGGATGACTTAAAATTCATATCAGCTTTACATGCTTTCAAGCGTCG 1017
||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 954 GATGGCTACAGATTCTGATGACTTGAAATTCATATCAGCTTTAAATGCTTTCAAGCGTCG 1013
Query 1018 TGTGGCATATGCAAACGTGAATTTTGATTCTATGGTTGGATGGAGGACATCTTCAATTCG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TGTGGCATATGCAAACGTGAATTTTGATTCTATGGTTGGATGGAGGACATCTTCAATTCG 1073
Query 1078 CCGTCCAAATGAACTCCCAAAGCCAAATCTTCTAGCAACTGATCCAAACTATCCACACAT 1137
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1074 CCGTCCAAATGAACTCCCAAAGCCAAATCTTCTAGCAACGGATCCAAACTATCCACACAT 1133
Query 1138 TGTATACGTAGAACGTGGAAATGTGGACAATGGTAGTTGCCAGTCAACTTCTACAGTAGT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TGTATACGTAGAACGTGGAAATGTGGACAATGGTAGTTGCCAGTCAACTTCTACAGTAGT 1193
Query 1198 AACAGAGCAAAATACTGATCTTGAAGAGGAAATGATACATGGACTCAGTCAACTATCTTG 1257
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 AACAGAGCAAGATACTGATCTTGAAGAGGAAATGATACATGGACTCAGTCAACTATCTTG 1253
Query 1258 GGAAAGAGTAGATGTCAGTTTTCACAATAGCAAGCAACGATACGTTGCTCATAGTACCAT 1317
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 1254 GGAAAGAGTAGATGTCAGCTTTCACAATAGCAAGCAACGATACGTCGCGCATAGTACCAT 1313
Query 1318 TCAGGTGAAAACATATTGGTTACATTCTGATGGCAAAGATGTTGTCTTCCACATGATGGA 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CCAGGTGAAAACATATTGGTTACATTCTGATGGCAAAGATGTTGTCTTCCACATGATGGA 1373
Query 1378 TCATTTCGGTCTCTAGCCCCAAACATTTTCAACCGCTGCAATTTAGTCAGCACTGTAAGA 1437
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1374 TCATTTCGGTCTCTAGCCCTAAACATTTTCAACCGCTGCAATT-AGTCAGCACTGTAAGA 1432
Query 1438 AGGCGATACCCATTACAAACTTCTTCTCTTCTTCCTTTTTGGTTATTTATATCGTATTTA 1497
|||||||| ||| |||||||||||||||| || || ||||||||||||||||||||||
Sbjct 1433 AGGCGATAAGCATCACAAACTTCTTCTCTT-TT--TTGTTGGTTATTTATATCGTATTTA 1489
Query 1498 GTACGATGCTTGATGCGATACAAATCGTGGGAAAGTTCTTGCCACTTTTTCCTTGATGGT 1557
||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1490 GTATGATGCTTGATGCGATACAAATCGTGGTAAAGTTCTTGGCACTTTTTCCTTGATGGT 1549
Query 1558 TATATAAAATGTTTTATAATTCTGTCGAACTATGAATCTGTACAGGTCTACTCGTTCTTT 1617
||| |||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1550 TATTTAAAATGTTTTATAGTTCTGTCGAACAATGAATCTGTACAGATCTACCCGTTCTTT 1609
Query 1618 GTaaaaaaaaaa----CATCCTTTTCTTGTCACTATCGATTCTGTAAGTTTTTGTTTTGA 1673
|||||||||||| ||| ||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1610 GTAAAAAAAAAAGGTTCATACTTCTCTTGTCACTATCGATTCTATAAGTTTTTGTTTTGA 1669
Query 1674 TCTTAAG 1680
|| ||||
Sbjct 1670 TCATAAG 1676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83031701430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5