BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492244
Length=664
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25760.1 | Symbols: ATGDU2, GDU2 | glutamine dumper 2 | chr4... 874 0.0
> AT4G25760.1 | Symbols: ATGDU2, GDU2 | glutamine dumper 2 | chr4:13116076-13116838
FORWARD LENGTH=763
Length=763
Score = 874 bits (473), Expect = 0.0
Identities = 594/650 (91%), Gaps = 18/650 (3%)
Strand=Plus/Plus
Query 1 AAACACACATGCAGACAATGGAAGGACGACAATATAATTACCAAGACAGCATAAACAG-G 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 66 AAACACACATGCAGACAATGGAAGGACGACAATATAATTACCAAGACAGCATAAAC-GCG 124
Query 60 AGCTCCTCCATGGTGGTGCCTCACTCGCCGTGGCACTCTCCGGTTCCTTATCTCTTCGGT 119
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 125 AGCTCCTCCATGGTGGTGCCTCACTCGCCTTGGCACTCTCCGGTTCCTTATCTCTTCGGT 184
Query 120 GGTTTGGCCGCCATGTTGGCTCTCATC-GCGGTCGCTCTTCTCATTCTCGCCTGTTCTTA 178
||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||| ||
Sbjct 185 GGTTTGGCCGCCATGTTGGCTCTCATCTGCG-TCGCTCTTCTCATCCTCGCATGTTCCTA 243
Query 179 CTGGAGACTCTCCGGCTCCGCTCAGAGTGATCTCGAGGCCGGAGATGATGCTAAACCCGA 238
|||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||
Sbjct 244 CTGGAGACTCTCCGGCTCCGCTGAGAGAGATCTTGAGGCCGGAGATGATGCCAAACCCGA 303
Query 239 CAATGACACTAACAAGTCTAAGCCCATGGTGATGCCGGAGAAGTTTCTCGTCATCATGGC 298
||||||||| ||||| |||||| || | ||||||||||||||||||||||| |||||
Sbjct 304 CAATGACACCAACAAAACTAAGCACACAGAAATGCCGGAGAAGTTTCTCGTCATAATGGC 363
Query 299 CGGTGATATCAAACCTACTTACTTGGCTACGCCGGCGACTCGGTCTGAGCAAAGCTGTAC 358
||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 364 CGGTGATGTCAGACCTACTTACTTGGCTACGCCAGCGACTCGGTCTGAGCAAAGCTGTAC 423
Query 359 TTGCGGCGATCATAACGCAGAAGAAGGAAGAGGAGGTTAGTGATCAGGTGGTACGGCAGA 418
||||||||||||||||| ||||||||||||| |||| |||||||||||||||| |||||
Sbjct 424 TTGCGGCGATCATAACGAAGAAGAAGGAAGAAGAGGGTAGTGATCAGGTGGTATAGCAGA 483
Query 419 GCACCGGAGGTTACGGTGATCCGTCATTCATCTTTTGAAAACAGAGCAATCGTTACGGAG 478
||||||||||||||||||| || || |||| |||||||||||||||| |||||||||||
Sbjct 484 GCACCGGAGGTTACGGTGAGCCCTCCCTCATATTTTGAAAACAGAGCATTCGTTACGGAG 543
Query 479 TACTCCGGAATCGATCCGTCCGGTCTTTTTGTGTCGGGTCGGTTCATAATTACGCCAACC 538
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 544 TACTCCGGAATCGATCCGTCCGGTCTTTTTGTGTCGG-T---T-CATAATTACGCCAACC 598
Query 539 TTACGTGAGC-G--G--ATATAG-TTAGAGTTTTATTTACTTCGTATGGtttt--tttAT 590
|||||||||| | | ||||| ||||||||||||||| ||||||||||||| ||| |
Sbjct 599 TTACGTGAGCTGATGGGATATAAATTAGAGTTTTATTTATTTCGTATGGTTTTAGTTTTT 658
Query 591 TTT-GGTTGTCTTAGTTTTCTTCTAATTTTTGCCGTTTATGGGTCATGAA 639
||| |||||||| |||||||||| ||||||| |||||||||| |||||||
Sbjct 659 TTTTGGTTGTCTCAGTTTTCTTCAAATTTTTCCCGTTTATGGTTCATGAA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099619933
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5