BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492247
Length=605
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25740.1 | Symbols: | RNA binding Plectin/S10 domain-contai... 601 3e-171
AT5G52650.1 | Symbols: | RNA binding Plectin/S10 domain-contai... 407 7e-113
> AT4G25740.1 | Symbols: | RNA binding Plectin/S10 domain-containing
protein | chr4:13107250-13108827 REVERSE LENGTH=848
Length=848
Score = 601 bits (325), Expect = 3e-171
Identities = 354/368 (96%), Gaps = 2/368 (1%)
Strand=Plus/Plus
Query 20 TCAAGCTCAGTGCCTCTTTTAC-GCGAAAGCTCAACCAACAAGACGATGATTATCTCAGA 78
|||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 32 TCAAGCTCAGTGCCTC-TTTGCAGCGAAAGCTCAACCAACAAGACGATGATTATCTCAGA 90
Query 79 GAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGAGGGAGTATGCTTTGCTAAGAA 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 GAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGAGGGAGTATGCTTTGCTAAGAA 150
Query 139 GGATTTCAATCTCGCGAAGCATCCTTTGATTGATGTACCAAACCTGCAAGTGATTAAGCT 198
||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 151 GGATTTCAATCTCCCAAAGCATCCGTTGATTGATGTACCAAACCTGCAAGTGATTAAGCT 210
Query 199 CATGCAGAGTTTCAAGTCCAAGGAGTATGTTAGGGAGACATTTGCGTGGATGCATTATTA 258
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 211 CATGCAGAGTTTCAAGTCCAAGGAGTACGTTAGGGAGACATTTGCGTGGATGCATTATTA 270
Query 259 TTGGTTTCTGACTAATGAAGGGATTGAGTTCTTGAGAACTTATCTTAACCTTCCTTCCGA 318
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 271 TTGGTTTCTGACTAATGAAGGAATTGAGTTCTTGAGAACTTATCTTAACCTTCCTTCCGA 330
Query 319 TGTTGTTCCTGCTACTTTGAAGAAGTCTGCTAAGCCTGTTGGCCGTTCCTTTGGTGGCCC 378
|||||| ||||||||||||||||||||||||||||| | ||| ||| |||||||||||||
Sbjct 331 TGTTGTCCCTGCTACTTTGAAGAAGTCTGCTAAGCCCGGTGGTCGTCCCTTTGGTGGCCC 390
Query 379 ACATGGTG 386
|| |||||
Sbjct 391 ACCTGGTG 398
> AT5G52650.1 | Symbols: | RNA binding Plectin/S10 domain-containing
protein | chr5:21355555-21357105 REVERSE LENGTH=868
Length=868
Score = 407 bits (220), Expect = 7e-113
Identities = 290/324 (90%), Gaps = 4/324 (1%)
Strand=Plus/Plus
Query 65 ATGATTATCTCAGAGAAC-AATCGCAGAGAGATCTGCAAATACCTTTTCAAAGAGGGAGT 123
||||||||||||||| | || |||| ||| |||||||| ||||| |||||||| |||||
Sbjct 103 ATGATTATCTCAGAG-GCTAACCGCAAAGAAATCTGCAAGTACCTCTTCAAAGAAGGAGT 161
Query 124 ATGCTTTGCTAAGAAGGATTTCAATCTCGCGAAGCATCCTTTGATTGATGTACCAAACCT 183
|||||||| ||||||||||||||||| || |||||||| ||||| ||||| || |||||
Sbjct 162 TTGCTTTGCGAAGAAGGATTTCAATCTTGCTAAGCATCCGTTGATCGATGTCCCCAACCT 221
Query 184 GCAAGTGATTAAGCTCATGCAGAGTTTCAAGTCCAAGGAGTATGTTAGGGAGACATTTGC 243
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 222 ACAAGTGATTAAGCTTATGCAGAGTTTCAAATCCAAGGAGTATGTTAGGGAGACATTTGC 281
Query 244 GTGGATGCATTATTATTGGTTTCTGACTAATGAAGGGATTGAGTTCTTGAGAACTTATCT 303
||||||||||| ||||||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 282 CTGGATGCATTACTATTGGTTTTTGACCAATGAAGGGATCGAGTTCTTGAGAACTTATCT 341
Query 304 TAACCTTCCTTCCGATGTTGTTCCTGCTACTTTGAAGAAGTCTGCTAAGCCTGTTGGCCG 363
||| ||||| || ||||||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct 342 TAATCTTCCATCTGATGTTGTTCCTGCTACTTTGAAGAAGTCAGCTAAGCCTGGTGGTCG 401
Query 364 TTCC-TTTGGTGGCCCACATGGTG 386
| || ||||||||||||| |||||
Sbjct 402 T-CCATTTGGTGGCCCACCTGGTG 424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29135805260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5