BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492247 Length=605 Score E Sequences producing significant alignments: (Bits) Value AT4G25740.1 | Symbols: | RNA binding Plectin/S10 domain-contai... 601 3e-171 AT5G52650.1 | Symbols: | RNA binding Plectin/S10 domain-contai... 407 7e-113 > AT4G25740.1 | Symbols: | RNA binding Plectin/S10 domain-containing protein | chr4:13107250-13108827 REVERSE LENGTH=848 Length=848 Score = 601 bits (325), Expect = 3e-171 Identities = 354/368 (96%), Gaps = 2/368 (1%) Strand=Plus/Plus Query 20 TCAAGCTCAGTGCCTCTTTTAC-GCGAAAGCTCAACCAACAAGACGATGATTATCTCAGA 78 |||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||| Sbjct 32 TCAAGCTCAGTGCCTC-TTTGCAGCGAAAGCTCAACCAACAAGACGATGATTATCTCAGA 90 Query 79 GAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGAGGGAGTATGCTTTGCTAAGAA 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 91 GAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGAGGGAGTATGCTTTGCTAAGAA 150 Query 139 GGATTTCAATCTCGCGAAGCATCCTTTGATTGATGTACCAAACCTGCAAGTGATTAAGCT 198 ||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 151 GGATTTCAATCTCCCAAAGCATCCGTTGATTGATGTACCAAACCTGCAAGTGATTAAGCT 210 Query 199 CATGCAGAGTTTCAAGTCCAAGGAGTATGTTAGGGAGACATTTGCGTGGATGCATTATTA 258 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 211 CATGCAGAGTTTCAAGTCCAAGGAGTACGTTAGGGAGACATTTGCGTGGATGCATTATTA 270 Query 259 TTGGTTTCTGACTAATGAAGGGATTGAGTTCTTGAGAACTTATCTTAACCTTCCTTCCGA 318 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 271 TTGGTTTCTGACTAATGAAGGAATTGAGTTCTTGAGAACTTATCTTAACCTTCCTTCCGA 330 Query 319 TGTTGTTCCTGCTACTTTGAAGAAGTCTGCTAAGCCTGTTGGCCGTTCCTTTGGTGGCCC 378 |||||| ||||||||||||||||||||||||||||| | ||| ||| ||||||||||||| Sbjct 331 TGTTGTCCCTGCTACTTTGAAGAAGTCTGCTAAGCCCGGTGGTCGTCCCTTTGGTGGCCC 390 Query 379 ACATGGTG 386 || ||||| Sbjct 391 ACCTGGTG 398 > AT5G52650.1 | Symbols: | RNA binding Plectin/S10 domain-containing protein | chr5:21355555-21357105 REVERSE LENGTH=868 Length=868 Score = 407 bits (220), Expect = 7e-113 Identities = 290/324 (90%), Gaps = 4/324 (1%) Strand=Plus/Plus Query 65 ATGATTATCTCAGAGAAC-AATCGCAGAGAGATCTGCAAATACCTTTTCAAAGAGGGAGT 123 ||||||||||||||| | || |||| ||| |||||||| ||||| |||||||| ||||| Sbjct 103 ATGATTATCTCAGAG-GCTAACCGCAAAGAAATCTGCAAGTACCTCTTCAAAGAAGGAGT 161 Query 124 ATGCTTTGCTAAGAAGGATTTCAATCTCGCGAAGCATCCTTTGATTGATGTACCAAACCT 183 |||||||| ||||||||||||||||| || |||||||| ||||| ||||| || ||||| Sbjct 162 TTGCTTTGCGAAGAAGGATTTCAATCTTGCTAAGCATCCGTTGATCGATGTCCCCAACCT 221 Query 184 GCAAGTGATTAAGCTCATGCAGAGTTTCAAGTCCAAGGAGTATGTTAGGGAGACATTTGC 243 |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 222 ACAAGTGATTAAGCTTATGCAGAGTTTCAAATCCAAGGAGTATGTTAGGGAGACATTTGC 281 Query 244 GTGGATGCATTATTATTGGTTTCTGACTAATGAAGGGATTGAGTTCTTGAGAACTTATCT 303 ||||||||||| ||||||||| |||| ||||||||||| |||||||||||||||||||| Sbjct 282 CTGGATGCATTACTATTGGTTTTTGACCAATGAAGGGATCGAGTTCTTGAGAACTTATCT 341 Query 304 TAACCTTCCTTCCGATGTTGTTCCTGCTACTTTGAAGAAGTCTGCTAAGCCTGTTGGCCG 363 ||| ||||| || ||||||||||||||||||||||||||||| |||||||||| ||| || Sbjct 342 TAATCTTCCATCTGATGTTGTTCCTGCTACTTTGAAGAAGTCAGCTAAGCCTGGTGGTCG 401 Query 364 TTCC-TTTGGTGGCCCACATGGTG 386 | || ||||||||||||| ||||| Sbjct 402 T-CCATTTGGTGGCCCACCTGGTG 424 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29135805260 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5