BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492249
Length=2628
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25730.1 | Symbols: | FtsJ-like methyltransferase family pr... 4150 0.0
> AT4G25730.1 | Symbols: | FtsJ-like methyltransferase family
protein | chr4:13102679-13106780 REVERSE LENGTH=2755
Length=2755
Score = 4150 bits (2247), Expect = 0.0
Identities = 2509/2636 (95%), Gaps = 16/2636 (1%)
Strand=Plus/Plus
Query 1 AATTGCTATTTCTCCGTCTCTGCGTGTTGAGGACCGA-AACGAAACCCTAGCAAAATCTC 59
|||||||||||||| | ||| | ||| |||| ||| | ||||||||||||||||||| ||
Sbjct 1 AATTGCTATTTCTCTGCCTCCGTGTGCTGAGAACC-AGAACGAAACCCTAGCAAAATATC 59
Query 60 ACCATGGGTAAGGTCAAAGGAAAGCATCGTTTGGATAAGTACTATCGTCTCGCTAAGGAA 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GCCATGGGTAAGGTCAAAGGAAAGCATCGTTTGGATAAGTACTATCGTCTCGCTAAGGAA 119
Query 120 CGTGGATTCCGTTCTCGAGCTTCCTACAAGCTTCTCCAGCTCGACGCCAAGTACTCTCTT 179
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 120 CGTGGATTCCGTTCTCGAGCTTCCTACAAGCTTCTTCAGCTCGACGCCAAGTACTCTCTT 179
Query 180 CTCCACTCTTG-TCATGCCGTTCTCGATCTCTGCGCCGCCCCTGGTGGTTGGATGCAAGT 238
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTCCACTC-AGCTCATGCCGTTCTCGATCTCTGCGCCGCCCCTGGTGGTTGGATGCAAGT 238
Query 239 CGCCGTCGAGAAAGTTCCCGTCGGCAGCCTTGTTCTCGGTATCGATCTTGTTCCGATTCT 298
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 239 CGCCGTCGAGAAAGTTCCCGTCGGCAGCCTCGTTCTCGGTATCGATCTTGTCCCGATTCT 298
Query 299 CCCTGTGCGTGGCTGTGTTACTATGACGCAAGATATCACAAGGACTGAGTGTAAATCGAA 358
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CCCTGTTCGTGGCTGTGTTACTATGACGCAAGATATCACAAGGACTGAGTGTAAATCGAA 358
Query 359 GATCAAGCAAGTGATGGAGCAGCATGGTGTTAGTGCTTTTAATTTGGTTTTGCACGATGG 418
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 359 GATCAAGCAAGTGATGGAGCAGCATGGTGTTAGTGCTTTTAATTTGGTTCTGCACGATGG 418
Query 419 GTCTCCAAATGTTGGTGGTGCGTGGGCTCAAGAGGCTATGAGCCAGAACGCTTTGGTTAT 478
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 419 GTCTCCAAATGTTGGTGGTGCGTGGGCACAAGAGGCTATGAGCCAGAACGCTTTGGTTAT 478
Query 479 TGATTCTGTTAGATTAGCCACTGAGTTCTTAGCTCGTAACGGGAATTTAATCACCAAGGT 538
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 479 TGATTCTGTTAGATTAGCCACTGAGTTCTTAGCTCGCAACGGGAATTTAGTCACCAAGGT 538
Query 539 TTTCAGGTCTCGAGATTACAACGCTGTGCTCTACTGTCTTGGGAGGCTGTTTGAGAAGGT 598
||||||||||||||| |||||| ||||||||||||||||||||||||||||||| || ||
Sbjct 539 TTTCAGGTCTCGAGACTACAACTCTGTGCTCTACTGTCTTGGGAGGCTGTTTGAAAAAGT 598
Query 599 TGAAGTGTTTAAGCCACCGGCTAGTCGTTCAGCATCTGCAGAAACATATCTTGTGGGTTT 658
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGAAGTGTTTAAGCCGCCGGCTAGTCGTTCAGCATCTGCAGAAACATATCTTGTGGGTTT 658
Query 659 GAAATACCTAGCCCCTGCCAAGATTGATCCCCGTCTTCTTGATTATAGACATCTCTTTAA 718
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GAAATACTTAGCCCCTGCCAAGATTGATCCCCGTCTTCTTGATTATAGACATCTCTTTAA 718
Query 719 GGAGGCAGCAGAGCCCACGAGAAAGGTGGTGGATGTGCTTGGAGGATCAAAACAGAAGAG 778
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 719 GGAGTCAGCAGAACCCACGAGAAAGGTGGTGGATGTGCTTGGAGGATCAAAACAAAAGAG 778
Query 779 AAACCGTGATGGGTATGAAGATGGAGAGTCCATTTTGAGAAGAGTTGCGTCTGCTGCTGA 838
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 779 AAACCGTGATGGGTATGAAGATGGGGAGTCCATTTTGAGAAGAGTTGCATCTGCTGCTGA 838
Query 839 TTTCATTTGGTCTGAAAATCCTCTCGAGGTTCTTGGCACGGTTACTTCCATATCCTTTGA 898
|||||||||||||||||||||||| || |||||||||||| |||||||||||| |||||
Sbjct 839 TTTCATTTGGTCTGAAAATCCTCTTGACGTTCTTGGCACGACTACTTCCATATCATTTGA 898
Query 899 TGATCAAGCCTCTCTACTTTTAAAGGAACATGATTTGACGACTGAGGAGATTAAAATTCT 958
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 899 TGATCAAGCCTCTCTACCTTTAAAGGAACATGATTTGACGACAGAGGAGATTAAAATTCT 958
Query 959 ATGCGATGATCTTCCTGTCTTGGGGAAGAATGACTTCAAGCATATCCTAAAATGGCGAAT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 ATGCGATGATCTTCCTGTCTTGGGGAAGAATGACTTCAAGCATATCCTAAAATGGCGAAT 1018
Query 1019 GCAAATCAGGAAAGCTCTTACTCCTGaaaaaaaGGAAGTTGCTAAACCTGAGCCTGATGC 1078
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1019 GCAAATCAGGAAAGCTCTGACTCCTGAGAAAAAGGAAGTTGCTAAACCTGAGCCTGATGT 1078
Query 1079 GGAAAAGGAAGATGAGGAAAATGAGGATGATAAACTACTCAATGAATTGGAAGAGCTGAC 1138
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1079 GGGAAAGGAAGATGAGGAAAATGAAGATGATAAACTACTCAATGAATTGGAAGAGCTGAC 1138
Query 1139 AAACACAGTCGACCGTAAGAAGAAACAGGCAAAGAAGATTCTTGCAAAACGAAGGGCTAA 1198
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AAACACAGTTGACCGCAAGAAGAAACAGGCAAAGAAGATTCTTGCAAAACGAAGGGCTAA 1198
Query 1199 GGATAAGACACGGAAGGCGACTAATCCACAGATGGATGTACTTGAAGATGGTTAT-GTCG 1257
||| ||| | |||||||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 1199 GGACAAGGCGCGGAAGGCGACTGGTCCACAGATGGATGTACTTGAAGATGGTT-TCGTCG 1257
Query 1258 ACAATGAATTGTTCTCTCTTGCTGCTATCAAGGGAAAGAAAGATCTAATGGCAGTTGACA 1317
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ACAATGAATTGTTCTCTCTTAATGCTATCAAGGGAAAGAAAGATCTAATGGCAGTTGACA 1317
Query 1318 ATGACGATGATGATGATGGCAATGCTGATGACAGCGAGAACGAAGACCGTGGTGAGGGAG 1377
|||| || |||||| |||||||||| | |||||| ||||||||||||| ||| || ||||
Sbjct 1318 ATGATGAAGATGATAATGGCAATGCCGTTGACAGTGAGAACGAAGACCATGGCGAAGGAG 1377
Query 1378 CTTCAGATGACTCCAAAGACAGTGACATAGATTCTGATGAAGAACGTCAGAAGTACACTG 1437
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1378 CTTCAGATGACTCCAAAGACAGTGACAGAGATTCTGATGAAGAACGTCAGAAATACACTG 1437
Query 1438 AACAAATGGAAGAGATTTTTGATG-AGGCATATGAGCGATATATGGTGAAGAAAGAAGGA 1496
|||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||
Sbjct 1438 AACAAATGGAAGAGATTTTTGA-GCAGGCATATGAGCGGTATATGGTGAAGAAAGAAGGA 1496
Query 1497 AGCGCAAAGCAAAGGAAACGGGCTAGGCAGGCCCATGCTGAAAAGCTGGAGGAAGGTGAT 1556
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 AGCGCAAAGCAAAGGAAGCGGGCTAGGCAGGCCCATGCTGAAAAGCTGGAGGAAGGTGAT 1556
Query 1557 GGAGATGAAGAAATGAAGATCGATTACGATTCAGATCTGAATGAAGAAAAAGATGAGGCA 1616
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1557 GGAGATGAAGAAATGAAGATCGATTACGATTCAGATATGAATGAAGAAAAGGATGAGGCA 1616
Query 1617 AACCCTCTTGTGGTACCACTTGATGATGGTGAGGTCCAAACAAAGGAGGAAATATCCAAC 1676
||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1617 AACCCTCTTGTTGTACCACTTGATGATGGAGTGGTCCAAACAAAGGAGGAAATATCCAAC 1676
Query 1677 CAGTGGTTCAGTCAGAATATATTTGCAGAAGCCGTGGAAGAAGGAGACTTGGGAAAAGAT 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CAGTGGTTCAGTCAGAATATATTTGCAGAAGCCGTGGAAGAAGGAGACTTGGGAAAAGAT 1736
Query 1737 GACGGTGAAGACGAAACACCAGTTGAGAAAAAGAGCAAAAATCTGTCTAAACCAGACAAG 1796
||| |||||||||||| | || | |||||||||||||||||||||||||||||||||||
Sbjct 1737 GACAGTGAAGACGAAATAGCAAATAAGAAAAAGAGCAAAAATCTGTCTAAACCAGACAAG 1796
Query 1797 TCAAATCAGAAGGCATCAAAAGCAAGCT-TGTTGTCTGATCAGAGCTTGCCCAATAGCTC 1855
||||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1797 TCAAAGCAGAAGGCTTCAAAAGCAAG-TGTGTTGTCTGATCAGAGCTTGCCCAATAGCTC 1855
Query 1856 TAAGAAGGAAGATGATTTTGAGGTAGTCCCTGCACCAGCCACGGATTCTGACTCAGATTC 1915
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1856 CAAGAAGGAAGATGAGTTTGAGGTAGTCCCTGCACCAGCCACAGATTCTGACTCAGATTC 1915
Query 1916 ATCCTCTGATGATGATGTTCATACAAAGGCCGAGATACTGGCATGTGCCAAGAAAATGCT 1975
||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1916 ATCCTCTGAAGATGATGTTCATACCAAGGCCGAGATACTGGCATGTGCCAAAAAAATGCT 1975
Query 1976 GAGGAAGAAGCAGAGAGAACAGATGCTTGATGATGCATATAACAAACACATGTTTGTAGA 2035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 GAGGAAGAAGCAGAGAGAACAGATGCTTGATGATGCATATAACAAACACATGTTTGTAGA 2035
Query 2036 TGAAGGTTTACCCAAATGGTTTGTGGATGACGAGAAGCAGCACAGACAACCAATGAAACC 2095
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 TGAAGGTTTACCAAAATGGTTTGTGGATGACGAGAAGCAGCACAGACAACCAATGAAACC 2095
Query 2096 CATAACGAAAGAAGAAGTTAATGCAATGAAAGCACAGTTCAAAGAGATCAATGCTCGTCC 2155
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2096 TGTTACGAAAGATGAAGTTAATGCAATGAAAGCACAGTTCAAAGAGATCAATGCTCGTCC 2155
Query 2156 AGCCAAGAAGGTGGCCGAGGCAAAAGCACGGAAGAAGCGAGCTGCCCAAAAAAGATTGGA 2215
||||||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 2156 AGCCAAGAAGGTGGCAGAGGCCAAGGCACGGAAGAAGCGAGCTGCCCAGAAAAGATTGGA 2215
Query 2216 GAAAGTGAGGAAGAAGGCAAACACAATATCTGACACAGCAGATATCTCAGACCGTTCAAA 2275
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2216 GAAAGTGAGGAAGAAGGCAAACACAATATCTGACACAGCAGATATATCAGACCGTTCAAA 2275
Query 2276 GGACAAGATGATAGACAAGCTATACAAGAAAGCAGCAGAGCCAAGAAAGCCTAGGAAAGA 2335
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2276 GGACAAGATGATAGACAAGCTATACAAGAAAGCAGCAGAGCCAAGAAAGCCAAGGAAAGA 2335
Query 2336 ACTGGTTGTGTCTAA-AAAGGGAGTTGGGGTTAAGGTTGGGAAAGGACAGAAGAGAGTGG 2394
||||||||||||||| ||||| |||||||||||| ||||| || ||||||||||||||||
Sbjct 2336 ACTGGTTGTGTCTAAGAAAGG-AGTTGGGGTTAAAGTTGGTAAGGGACAGAAGAGAGTGG 2394
Query 2395 ATAGGAGGATGAAGAGTGATGCTAGGAAGCGTGGGGGAGGAAAGCCCGGCAGGAACGGGC 2454
||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||
Sbjct 2395 ATAGGAGGATGAAGAGTGATGATAGGAAACGTGGGGGAGGAAAGCCCGGTAGGAACGGGC 2454
Query 2455 AGAAGGGCACTGGTAAAGCAGGCCAGAAAGGAAAAAGGCCGGCTGGGAAACCACGAGGGA 2514
|||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 2455 AGAAGGGCACTGGTAAAGCAGGCCAGAAAGGAAAAAGGCCTGCTGGGAAACCTCG-GGGA 2513
Query 2515 AG-AAACCCGGGTAAGACCTCAATGTCGAATGAGGCGAAAAGGAAGTTTTGT-ACCGTAT 2572
|| |||||||||||||||||||||||||||||||||||| |||||||||||| || ||||
Sbjct 2514 AGGAAACCCGGGTAAGACCTCAATGTCGAATGAGGCGAACAGGAAGTTTTGTTAC-GTAT 2572
Query 2573 TTTAGTTTGATTTTTGGCAATTTTTGACTTATGGATTTTGTTCTTAACTCAGATAA 2628
|||| ||| | ||||||||||| ||||||| ||||||| || || |||| |||||
Sbjct 2573 TTTAATTTAAGTTTTGGCAATTCTTGACTTCTGGATTTACTTGTTTACTCTGATAA 2628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130484218743
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5