BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492250
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25720.1 | Symbols: ATQC, QC, QCT | glutaminyl cyclase | chr... 1459 0.0
> AT4G25720.1 | Symbols: ATQC, QC, QCT | glutaminyl cyclase | chr4:13099818-13102578
REVERSE LENGTH=1182
Length=1182
Score = 1459 bits (790), Expect = 0.0
Identities = 991/1084 (91%), Gaps = 30/1084 (3%)
Strand=Plus/Plus
Query 1 TTTAACGTATTTCTCAAAATTACGTTGCCAAAGAAAGAAAGACTGGTCAGAGCGAAAAAT 60
||||||| ||||||||||||||||||||| |||| ||||||||||| |
Sbjct 7 TTTAACGCATTTCTCAAAATTACGTTGCC--------AAAGTCTGGTCAGAGC----TA- 53
Query 61 CAAAGTGAACAAATTTGACAGACGGCAAATTT-CAATCCAACGACTGCGAATGAAGTTTA 119
|||| | |||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 54 CAAA-T---CAAATTTGACAGACTGC-AATTTCCAATCCAACGACTGCGAATGAAGTTTA 108
Query 120 ATGGCGACTAGATCGCCTTATAAGAGACAAACGAAGCGATCAATGATTCAATCTCTTCCA 179
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 109 ATGGCGACTAGATCGCCTTATAAGAGACAAACGAAGCGATCCATGATTCAGTCTCTTCCA 168
Query 180 GCTTCTTCT---GCATC-TC--GCCGCCGATTCATTTCTCGGAAGAGGATCGCTATGATG 233
||||||||| ||||| || |||||||||||||||||||||||||| |||| ||||||
Sbjct 169 GCTTCTTCTTCTGCATCATCTCGCCGCCGATTCATTTCTCGGAAGAGGTTCGCGATGATG 228
Query 234 ATTCCTCTTGCTCTCTTCTCCGGCGCCGTTTTCCTATTCTTTATGCCATTCAATAGTTGG 293
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 229 ATTCCTCTTGCTCTCCTCTCCGGCGCCGTTTTCCTATTCTTTATGCCATTCAATAGCTGG 288
Query 294 GGCCAATCATCTGGTTCA-CT--GGATCTCTCCCATAGGATCCATGAAATTGAAGTAGTT 350
||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 289 GGCCAATCATCTGGTTCTTCTCTGGATCTCTCCCATAGGATCAATGAAATTGAAGTAGTT 348
Query 351 GCTGAGTTTCCTCATGATCCTGACGCCTTTACTCAGGGACTTCTTTATGCGGGAAACGAT 410
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 349 GCTGAGTTTCCTCATGATCCGGACGCCTTTACTCAGGGTCTTCTTTATGCGGGAAACGAT 408
Query 411 ACCCTGTTTGAATCCACGGGTCTATATGGGAAGTCGTCAGTGAGGAAAGTGGATCTACGA 470
|| ||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 409 ACACTGTTCGAATCCACTGGTCTATACGGGAAGTCTTCAGTGAGGAAAGTGGATCTACGA 468
Query 471 ACAGGGAAGGTTGAAGTTATTGAAAAAATGGGTAATTCTTACTTTGGAGAGGGTTTAACA 530
||||| ||||||||| || |||||||||||| ||| | || ||||||||||||||||||
Sbjct 469 ACAGGAAAGGTTGAAATTCTTGAAAAAATGGACAATACATATTTTGGAGAGGGTTTAACA 528
Query 531 CTCCTTGGAGAAAGACTCTTTCAAGTTGCATGGTTGACGAATACGGGTTTCACATACGAG 590
|||||||||||||| ||||||||||| ||||||||||| || |||||||||||||| ||
Sbjct 529 CTCCTTGGAGAAAGGCTCTTTCAAGTCGCATGGTTGACAAACACGGGTTTCACATATGAC 588
Query 591 ATTCGCGACTTAAGCAAAGTAAAACCATTTAAACATCATATGAAAGATGGATGGGGACTG 650
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 CTTCGCAACTTAAGTAAAGTAAAACCATTTAAACATCATATGAAAGATGGATGGGGACTG 648
Query 651 GCTACCGATGGAGAAGTGTTGTTTGGAAGTGATGGCACTTCTACACTATACCGGATGGAC 710
|||||||||||| ||| ||| |||||||||||||||||||||||| |||| |||||||||
Sbjct 649 GCTACCGATGGAAAAGCGTTATTTGGAAGTGATGGCACTTCTACATTATATCGGATGGAC 708
Query 711 CCTCGAACAATGAAAGTTACTAATAAGCACACT-GTCAGATATAATGGCTATGAGGTACG 769
|||| |||||||||||||||| ||||||| | | ||||||||||||||| |||||||||
Sbjct 709 CCTCAAACAATGAAAGTTACTGATAAGCATA-TAGTCAGATATAATGGCCGTGAGGTACG 767
Query 770 TTACCTCAATGAGCTCGAGTACATAAACAAAGAAGTATGGGCAAACGTGTGGCAGTCTGA 829
|||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 768 TTACCTTAATGAGCTCGAGTACATAAACAACGAAGTTTGGGCAAATGTGTGGCAGTCTGA 827
Query 830 TTGTATTGCTAGAATTTCACCCAAGGACGGATCGCTGCTTGGATGGATACTGCTACCAAA 889
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 828 TTGTATTGCTAGAATTTCACCCAAGGACGGATCTCTGCTTGGATGGATACTGCTTTCAAA 887
Query 890 ATTAAGACAAGGATTGCTGAAATCTGGACATGGGGGTATTGATGTCTTGAATGGCATAGC 949
|||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 888 ATTAAGTCGGGGATTGCTGAAATCTGGACATAGGGGTATTGATGTTTTGAATGGCATAGC 947
Query 950 ATGGGACAGCGACAAGCAACGCCTCTTTGTAACCGGGAAACTGTGGCCGAAGCTGTACCA 1009
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 948 ATGGGACAGTGACAAGCAACGCCTCTTTGTAACGGGGAAACTGTGGCCAAAGCTGTACCA 1007
Query 1010 AATCAAGCTAAAACAAGCATCAGCAAAGAGCGGAAAATATATGGAGCAACAATGCTTGGT 1069
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1008 AATCAAGCTAAAACAAGCATCAGCAAAGAGCGGAAATTATATCGAGCAACAATGCTTGGT 1067
Query 1070 ATGA 1073
||||
Sbjct 1068 ATGA 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52559970615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5