BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492252
Length=1389
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25710.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1663 0.0
AT5G51250.1 | Symbols: | Galactose oxidase/kelch repeat superf... 350 3e-95
AT3G08810.1 | Symbols: | Galactose oxidase/kelch repeat superf... 278 1e-73
AT3G09750.1 | Symbols: | Galactose oxidase/kelch repeat superf... 191 2e-47
AT3G09915.1 | Symbols: | pseudogene, hypothetical protein | ch... 84.2 3e-15
> AT4G25710.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:13098141-13099531 REVERSE LENGTH=1391
Length=1391
Score = 1663 bits (900), Expect = 0.0
Identities = 1229/1380 (89%), Gaps = 53/1380 (4%)
Strand=Plus/Plus
Query 41 GGA-AGACAACGTCGTCGTCGAACAAGAAGAGGAAGACAACGCCGTCGACGCCGCAATCG 99
||| |||||||| |||||||||||| ||||| |||| || | | | | || |||
Sbjct 19 GGAGAGACAACGACGTCGTCGAACATGAAGAAGAAG--AA-GAAGAAGGTGTCG---TCG 72
Query 100 ACACCAAATCCGTCACTTCCCGATGATTTGCTATTGCTCATCATCGCACGCGTCCCAATA 159
||| |||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 73 ACAACAAATCCGTCACTTCCCGATGATTTGGTATTGGTCATCATCGCACGCGTCTCAATA 132
Query 160 TTATTCTATCCGATTCTCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTGGCTTCACC- 218
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 TTATACTATCCTATTCTCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTGGCTTCACCG 192
Query 219 GAGGCTTTACAAGGCCCGGTCACTCTTGGGCCGCAGGGAGAGTCGTCTCTATGTGTGCAT 278
|| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 GA-GCTTTACAAGGTCAGGTCACTCTTGGGCCGCAGGGAGAGTCGTCTCTATGTGTGCAT 251
Query 279 AAATATGTATCCTTATAAAAACGGCCCTAGCTGGTTCACCCTCTGCCGGAAACCTGACCG 338
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 252 AAATATGTATTCTTATAAAAACGGCCCTAGCTGGTTCACCCTCTGCCGGAAACCGGATCG 311
Query 339 ---AACAACCAGTAGTAATAAGGAGCAGGACAAGTCAAGTGGTTATGTCTTGGCAAGAGT 395
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
Sbjct 312 AACAACAACCAGTAGTAATAAGGAGGAGGACAGGTCAAGTGGTTATGTCTTGGCAAGAAT 371
Query 396 TCCAATTCCCCATTCTCCTTTGTCTCAG-GATAATAGCCTCGTGGCGGTTGGTTCTGATA 454
||||||||||||||||||||| ||||| ||| ||||||||| ||||||||||||| |||
Sbjct 372 CCCAATTCCCCATTCTCCTTTGACTCAGAGAT-ATAGCCTCGCGGCGGTTGGTTCTAATA 430
Query 455 TCTATAACATTGGCGTGGTCC-GAT-CCTGCGAAGCGTCCTCCTCTAGTGTCTGGATTCT 512
|||||||||||||||| || ||| || | | | ||||||||||||||||| ||||
Sbjct 431 TCTATAACATTGGCGT-AACCAGATACC-ACCATTTGACCTCCTCTAGTGTCTGGGTTCT 488
Query 513 GGATTGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCTTGCCGGTGGAGCTATTTACAGT 572
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 489 GGATTGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCTTGCCGGTGGAGCTATTTAGAGT 548
Query 573 TACTGTTAGTGTCCTTGATCAAAAGATATATGTAGCAGGGATATGCCTAGAAGATGGCTC 632
| ||||||| |||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 549 TTCTGTTAGCGTCCTTGATCAAAAGATATATGTAGCAGGGTTACACCAAGAAGATGGCTC 608
Query 633 GGATTCCTCCACGCAGAACTCGCTCACGGTGTTGGACACAAAAACACAAGTAAGTGCTCG 692
|||||||| | |||||||| | ||||||||||||||| ||||||||||||||| |||
Sbjct 609 GGATTCCTTGA---AGAACTCGGTTACGGTGTTGGACACAGAAACACAAGTAAGTGATCG 665
Query 693 GGTGCCTATCCCATGCAGTGTGGCACAAGGCAAGGAGATCTTCCTAAGCACATGTGTTGG 752
|||| ||||||||||||| ||| |||||||||||||||||||| |||||||| |||||||
Sbjct 666 GGTGGCTATCCCATGCAGCGTGTCACAAGGCAAGGAGATCTTCATAAGCACAAGTGTTGG 725
Query 753 CGGAAAGGTCAACCTCGTTACTGGGAGAGAGGTGGTTGATTACAATCCAGTGGAAGGTAG 812
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 726 CGGAAAGGTCAACCTCGTGACTGGGAGAAAGGTGGTTGATTACAATCCAGTGGAAGGTAG 785
Query 813 CTGGGAGGAGGTTGGAGAAACCATGTGTCAATTTATGTTTGCTGAATGTTTTTGCGTGGT 872
|||||||||||||||||| ||||||||| | ||||||||| | ||||||||||||||||
Sbjct 786 CTGGGAGGAGGTTGGAGATACCATGTGTGAGTTTATGTTTTCAAAATGTTTTTGCGTGGT 845
Query 873 TGATAATGTTTTGTACTCGTGTGCTATTGACCGAGTGTTCAGATGGTATCACGCTGAGGT 932
|| ||||||||||||||| |||||||||||||||||||||||||||||| || |||||||
Sbjct 846 TGGTAATGTTTTGTACTCATGTGCTATTGACCGAGTGTTCAGATGGTATGACACTGAGGT 905
Query 933 AAGAACGTGGAGAAATTTGGAGGGTTTGGTAGGA---C---TACCCGAGTTATCTCC-CG 985
|||||| ||||||||||||||| ||||| ||||| | ||||| |||||||||| ||
Sbjct 906 AAGAACATGGAGAAATTTGGAGTGTTTGATAGGAGGACGACTACCCAAGTTATCTCCGCG 965
Query 986 ATGCTTTTGTTAGATTGGCTGATTATGGTGGAAAGCTCGTTGTTTTGTGGAACCGTGGT- 1044
|||||||||||| ||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct 966 -TGCTTTTGTTAGTTTGGCTGATTATGGTGGAAAGCTCGCTGTTTTTTGGAACCAAGGTG 1024
Query 1045 TACGGCCG-TTGGAAGATGCTTTGCTGTGCCGAGATTTCGCTTGAAAGGCGCAATACTTG 1103
| |||| | |||| |||||||||| ||||| | |||| ||||||||||||||||||||||
Sbjct 1025 T-CGGC-GATTGGCAGATGCTTTGGTGTGCAGTGATTGCGCTTGAAAGGCGCAATACTTG 1082
Query 1104 TGAAATTTGGGGGAAAGTTGAGTGGTTTGATCATGTCCTT-AGTGTCCCTGGGTTA-GTT 1161
|||||||| |||||| |||||||||| ||||||||| ||| | ||||||| | || |||
Sbjct 1083 TGAAATTTTGGGGAATGTTGAGTGGTCTGATCATGTGCTTCA-TGTCCCTAAGATACGTT 1141
Query 1162 TCTTTA-TACAACGCTCTTTCTGCTACTCTCTGATCATGAATGTGTCAGAATGCTTGAAC 1220
||| | ||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1142 -CTT-ACTACAACGCTCTTTCTGCTACTCTCTGAG-ATGAATGTGTCAGTATGCTTGAAC 1198
Query 1221 CGTGTCTTC-T-TTTT-GTGTACCC-TTGTATGGTGGTCtttattctatggtatttta-g 1275
||||||||| | |||| ||||| || |||||| ||||||||| |||| |||||||||| |
Sbjct 1199 CGTGTCTTCATCTTTTTGTGTAACCGTTGTATTGTGGTCTTTGTTCTGTGGTATTTTATG 1258
Query 1276 catttattggctttgatttcgatttg-tttagtttattt-att-t--gtcttgctctttt 1330
|||||||||||||||||||||||| |||||||||||| ||| | |||||||||||||
Sbjct 1259 -ATTTATTGGCTTTGATTTCGATTTTATTTAGTTTATTTGATTGTTTGTCTTGCTCTTTT 1317
Query 1331 gGTTCGTTAGTTTAAGATCCTTTTGTAAAGAGA-GTATTGGAATGAACAAGTATCCTATT 1389
|| ||| |||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 1318 GGCTCGGTAGTTTAAGATCCTTTTGTAAAGAGACG-ATTGGAATAAACAAGTATCCTATT 1376
> AT5G51250.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:20830743-20831849 FORWARD LENGTH=1107
Length=1107
Score = 350 bits (189), Expect = 3e-95
Identities = 714/954 (75%), Gaps = 89/954 (9%)
Strand=Plus/Plus
Query 110 CGTCACTTCCCGATGATTTGCTATTGCTCATCATCGCACGCGTCCCAATATTATTCTATC 169
|||||||||||||||||||||||||| |||| |||||||| || ||| ||| | |||||
Sbjct 5 CGTCACTTCCCGATGATTTGCTATTGAGCATCTTCGCACGCATCTCAAGATTGTACTATC 64
Query 170 CGATTCTCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTGGCTTCACC-GAGGCTTTAC 228
||| |||||| || |||||||||||||| |||||||| || |||||||| || ||||||
Sbjct 65 CGACTCTCTCTCTTGTCTCCAAGAGCTTCCGATCTCTACTAGCTTCACCGGA-CCTTTAC 123
Query 229 AAGGCCCGGTCACTCTTGGGCCGCAGGGAGAGTCGTCTCTATGTGTGC-ATAAATATGTA 287
|| ||||| |||||||| |||| || |||||| ||||||| |||||| | | | || |
Sbjct 124 AAAGCCCGATCACTCTTAGGCCACACTGAGAGTTGTCTCTACGTGTGCTTTCATTTTG-A 182
Query 288 TCCTTATAAAAACGGCCCTAGCTGGTTCACCCTCTGCCGGAAACCTGACCGAA--C-AAC 344
| || ||| | | | |||||||| ||||| |||||||||||| ||| | |||
Sbjct 183 TTCTGGCCCTAAC-ACAC-A-TTGGTTCACTCTCTGTCGGAAACCTGACGGAACCCTAAC 239
Query 345 CAGTAGTA-ATAAG-GAGCAGGACAAGTCAAGTGGTTATGTCTTGGCAAGAGTTCCAATT 402
|| | | | | || || || | ||||||| ||| ||||| ||||| | || ||||||
Sbjct 240 CAAT-G-ACACCAGTAAGAAGAAGAAGTCAAATGGGTATGTTTTGGCTACTGTGCCAATT 297
Query 403 CCCCATTCTCCT-TTGTCTCA-GGATAATAGCCTCGTGGCGGTTGGTTCTGATATCTATA 460
|||||||||||| || | | | | || |||||||||||||||||||||||||| |
Sbjct 298 CCCCATTCTCCTCCTG-CAAACTTTTCA-AGTCTCGTGGCGGTTGGTTCTGATATCTACA 355
Query 461 ACATTGGCGTGG-TCCGA--T-CCTGCGAAGCGTCCTCCTCTAGTGTCTGGATTCTGGAT 516
||||| | |||| ||| | | ||| | | | ||||| |||||||||| ||||||||||
Sbjct 356 ACATT-G-GTGGATCC-ATTTACCT-AGGACCCTCCTCGTCTAGTGTCTCGATTCTGGAT 411
Query 517 TGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCTTGCCGGTGGAGCT-AT-TTACAGTTA 574
| || |||||||| ||||||| ||||||||||||||| ||||||||| || | ||| ||
Sbjct 412 TCCCAGTCTCACATGTGGCGCGAGGCTCCAAGCTTGCGGGTGGAGCTGATGTCACA-TT- 469
Query 575 CTGTTAGTGTCCTTGATCA-AAAGATATATGTAGCAGGGATATGCCTA-GAAGATGGC-- 630
||| ||| |||||||| || |||||||||||||||| ||| | | ||| ||||||||
Sbjct 470 CTGCTAGCGTCCTTGA-CAGAAAGATATATGTAGCA-GGA-A-G-CTACAAAGATGGCAA 524
Query 631 TCG-GATT-C--CTCCACG-CAGAACTCGCTC-ACGGTGTTGGACACAAAAACACAAGTA 684
| | |||| | |||| | |||||| | || | |||||| |||||||||||||||||
Sbjct 525 TGGCGATTCCAACTCC-TGTAAGAACTTGTTCGA-GGTGTTCGACACAAAAACACAAGT- 581
Query 685 AGT-GC-TCGGGTGCCTATCCCATGCAGTGTGGCACAAGGCAAGGAGAT-CTTCC-TAAG 740
|| || || | ||| ||||||||||| | || ||||| | | | ||| |||
Sbjct 582 -GTGGCATCCTGAGCCCATCCCATGCAGCAAGACAAAAGGC-ATTTTTTAC-TCCAAAAG 638
Query 741 CACATGTGTTGGCGGAAAG-GTCAACCT--CG-TTACT-GGGAGAGAGGTGGT-TGATTA 794
| ||||| ||| |||||| || || | | ||| | ||| ||| || || |||
Sbjct 639 CGCATGTATTGATGGAAAGTTTC-ACGTGGAGACGACTCACG-GAGTGGT-GTATGCTTA 695
Query 795 CAATCCAGTGGAAGGTAGCTGGGAGGAGGTTGGAGAAACCATGTGTCAAT-TTATGTTTG 853
| | | ||||||||| ||||| ||| | | ||| |||| | | |||| |
Sbjct 696 C-A---A--GGAAGGTAGATGGGACAAGGCTATACCAACGATGT-T---TGGTATGAGGG 745
Query 854 C-TGA-A-TGTTTTTGCGTGGTTGATAATGTTTTGTACTCGTGTGCTATTGACCGAGTGT 910
| | | | | |||||||| | | |||||||||||| || | | | || | | ||||||
Sbjct 746 CTTCATATTCTTTTTGCGAGATAAATAATGTTTTGTTCT-ATATTC-ATCG-CGGAGTGT 802
Query 911 TCAGATGGTATCACGCTGAGGTAAGAACGTGGAGAA-ATTTGGAGGGTTTGGTAGGACTA 969
||||||||||| | || || |||||| |||||||| ||| | | |||||| ||||||||
Sbjct 803 TCAGATGGTATGATACTAAGTTAAGAATGTGGAGAATATT-GAAAGGTTTGTTAGGACTA 861
Query 970 CCCGAGTT-ATCTCCCGA-TGCT-TTTGTTAGATTGGCTGATTATGGTGGAAAG 1020
|| |||| | || || | | ||||||||||||||||||||||||||||||
Sbjct 862 CCT-AGTTTACCTGA-GAATA-TGTTTGTTAGATTGGCTGATTATGGTGGAAAG 912
> AT3G08810.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:2675631-2676693 REVERSE LENGTH=1063
Length=1063
Score = 278 bits (150), Expect = 1e-73
Identities = 389/498 (78%), Gaps = 42/498 (8%)
Strand=Plus/Plus
Query 109 CCGTCACTTCCCGATGATTTGCTATTGCTCATCATCGCACGCGTCCCAATATTATTCTAT 168
|||||||||||||||||| |||||||| |||| ||||||||||| ||| ||| | ||||
Sbjct 101 CCGTCACTTCCCGATGATGTGCTATTGAGCATCTTCGCACGCGTCTCAAGATTGTACTAT 160
Query 169 CCGATTCTCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTGGCTTCACCGAG-GCTTTA 227
|||| |||||||| ||| ||| ||||||||||||||||||| |||||||| || ||||||
Sbjct 161 CCGACTCTCTCACACGTATCCGAGAGCTTTCGATCTCTCCTAGCTTCACC-AGAGCTTTA 219
Query 228 CAAGGCCCGGTCACTCTTGGGCCGCAGGGAGAGTC-GTCTCTATGTGTGCATAAATATGT 286
||| ||| ||||||||| ||| || |||| || ||||||| |||||| | || |
Sbjct 220 CAAAGCCAGGTCACTCTCGGGAAACACCGAGA-TCTGTCTCTACGTGTGC-T---TACG- 273
Query 287 ATCCTTATAAAAAC-GGCCCTAGCTGGTTCACCCTCTGCCGGAAACCTGACCGAACAACC 345
| | | | || || | ||||||| | |||| |||| |||||||| | | ||||
Sbjct 274 GTGC-TCT----ACTGGTTATCGCTGGTTTAGCCTCAGCCGTAAACCTGATC--A-AACC 325
Query 346 AGT-A-GTAATAAGGAGCAGGACAAGTCAAGTGGTTATGTC-TTGGCAAGAGTTCCAATT 402
| | | || ||||| ||| |||||||||||||||| | ||||| ||||| ||||||
Sbjct 326 -CTAACCT-ATGAGGAG-AGG--AAGTCAAGTGGTTATG-CTTTGGCTAGAGTCCCAATT 379
Query 403 CCC---CATTCTCCTTTGTCTCAGGATAAT--AGCCTCGTGGCGGTTGGTTCTGATATCT 457
||| |||||| | | | | ||| | || |||||||||||||||||||||||||
Sbjct 380 CCCGGTGGTTCTCC-TAATGT-ACGATCTTCGAGTCTCGTGGCGGTTGGTTCTGATATCT 437
Query 458 ATAACATTGGCGTGGTCCGATCCTGCGAAGCG---TCCTCCTCTAGTGTCTGGATTCTGG 514
|||||||| ||| | ||| || | | ||||| ||||||||||| |||| |||||||
Sbjct 438 ATAACATTTGCG-GATCC-AT-CAACAAAGCGTCCTCCTCCTCTAGCGTCTCAATTCTGG 494
Query 515 ATTGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCTTGCCGGTGGAGCTAT-TTACAGTT 573
|||| | ||||||||||||||| |||||||||||||||||||||||||| || || ||
Sbjct 495 ATTGTCAGTCTCACACGTGGCGGGAGGCTCCAAGCTTGCCGGTGGAGCTAAGTT-CAATT 553
Query 574 ACTGTTAGTGTCCTTGAT 591
||| ||| |||| ||||
Sbjct 554 TCTGCTAGCGTCCGTGAT 571
> AT3G09750.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:2991655-2992679 REVERSE LENGTH=936
Length=936
Score = 191 bits (103), Expect = 2e-47
Identities = 184/222 (83%), Gaps = 10/222 (5%)
Strand=Plus/Plus
Query 59 CGAACAAGAAG-AGGAAGACAAC-GCCGTCGACGCCGCAATCGACACCA-AATCCGTCAC 115
|||| |||||| | |||| || | | ||||||||||| ||| ||| || |||||||||
Sbjct 127 CGAAGAAGAAGCA-GAAG-CAGCTGTCGTCGACGCCGGAATTGAC-TCATAATCCGTCAA 183
Query 116 TTCCCGATGATTTGCTATTGCTCATCATCGCACGCGTCCCAATATTATTCTATCCGATTC 175
||||| ||||||| ||| ||| |||| ||||| || |||||| ||| | |||| || ||
Sbjct 184 TTCCCTATGATTTTCTAATGCACATCGTCGCATGCATCCCAAGATTGTACTAT--GAGTC 241
Query 176 TCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTGGCTTCACC-GAGGCTTTACAAGGCC 234
|||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct 242 TCTCACTCGTCTCCAAGAGCTTTCGATCTCTCCTAGCTTCACCAGAG-CTTTACAAGGTA 300
Query 235 CGGTCACTCTTGGGCCGCAGGGAGAGTCGTCTCTATGTGTGC 276
|||||| |||||||||| |||||| |||||||||| |||
Sbjct 301 AGGTCACAGTTGGGCCGCACAGAGAGTTGTCTCTATGTTTGC 342
> AT3G09915.1 | Symbols: | pseudogene, hypothetical protein |
chr3:3039015-3040186 REVERSE LENGTH=1172
Length=1172
Score = 84.2 bits (45), Expect = 3e-15
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 491 CCTCCTCTAGTGTCTGGATTCTGGATTGCCGGTCTCACACGTGGCGCCAGGCTCCAAGCT 550
||||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 438 CCTCCTCTAACGTCTCGATTCTGGATTGCCGGTCTCACACGTGGCGCCAGGTTCAAAGCT 497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68423342835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5