BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492254
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25700.1 | Symbols: BETA-OHASE 1, B1, chy1, BCH1 | beta-hydr... 1639 0.0
AT5G52570.1 | Symbols: BETA-OHASE 2, B2, CHY2, BCH2 | beta-caro... 749 0.0
> AT4G25700.1 | Symbols: BETA-OHASE 1, B1, chy1, BCH1 | beta-hydroxylase
1 | chr4:13093934-13095935 REVERSE LENGTH=1210
Length=1210
Score = 1639 bits (887), Expect = 0.0
Identities = 1062/1142 (93%), Gaps = 30/1142 (3%)
Strand=Plus/Plus
Query 43 ATGGCGGTAGGACTCTCAACCGCCGTTACATTCAAACCTCTCCACCGCTC--T-T--T-C 96
||||||| |||||||||||||||||||||||||||||| ||||||||||| | | | |
Sbjct 70 ATGGCGGCAGGACTCTCAACCGCCGTTACATTCAAACCACTCCACCGCTCTTTCTCCTCC 129
Query 97 T-C-CT-CCGATTTCCGCCTCCGCCACCCAAAATCCTTATCCGGATTCTCTCCGTCTCTT 153
| | || |||||||||| ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 130 TCCTCTACCGATTTCCGACTCCGCCTCCCGAAATCCTTATCCGGATTCTCTCCGTCTCTT 189
Query 154 CGATTTAAAGGCTTTTCTGTCTGTTTCGTCGTGGAGGAGCGAAGACAGAACTCTCCGATT 213
||||||||| ||||||||||||||| |||||| || || || |||||||| |||||||||
Sbjct 190 CGATTTAAACGCTTTTCTGTCTGTTACGTCGTCGAAGAACGGAGACAGAATTCTCCGATT 249
Query 214 GAGAACGATGA-ACGACCGGAGAGCACGAGCTCAACCACCGCCATAGACGCCGAGTATCT 272
||||||||||| | ||||||||||||||||||| || | ||| |||||||| ||||||||
Sbjct 250 GAGAACGATGAGA-GACCGGAGAGCACGAGCTCCACAAACGCTATAGACGCTGAGTATCT 308
Query 273 CGCGTTGCGATTGGCGGAGAAATTGGAAAGGAAGAAATCAGAGAGGTCCACTTATCTAAT 332
|||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 309 GGCGTTGCGTTTGGCGGAGAAATTGGAGAGGAAGAAATCGGAGAGGTCCACTTATCTAAT 368
Query 333 CGCTGC-AGTGTTGTCAAGCTTTGGTATCACTTCTATGGCTGTTATGGCTGTTTACTACA 391
|||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CGCTGCTA-TGTTGTCGAGCTTTGGTATCACTTCTATGGCTGTTATGGCTGTTTACTACA 427
Query 392 GATTCTCTTGGCAAATGGAGGGAGGTGAGATCTCAATGTTGGAGATGTTTGGTACATTTG 451
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 428 GATTCTCTTGGCAAATGGAGGGAGGTGAGATCTCAATGTTGGAAATGTTTGGTACATTTG 487
Query 452 CTCTCTCTGTTGGTGCTGCGGTTGGTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTC 511
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 488 CTCTCTCTGTTGGTGCTGCTGTTGGTATGGAATTCTGGGCAAGATGGGCTCATAGAGCTC 547
Query 512 TCTGGCACGCTTCTCTATGGAATATGCATGAGTCACATCACAAACCAAGAGAAGGACCGT 571
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 TGTGGCACGCTTCTCTATGGAATATGCATGAGTCACATCACAAACCAAGAGAAGGACCGT 607
Query 572 TTGAGTTAAACGATGTTTTTGCTATAGTGAACGCTGTTCCAGCGATTGGTCTCCTCTCTT 631
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 608 TTGAGCTAAACGATGTTTTTGCTATAGTGAACGCTGGTCCAGCGATTGGTCTCCTCTCTT 667
Query 632 ATGGATTCTTCAATAAAGGACTCGTTCCTGGTCTCTGCTTTGGCGCCGGGTTAGGAATAA 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 668 ATGGATTCTTCAATAAAGGACTCGTTCCTGGTCTCTGCTTTGGCGCCGGGTTAGGCATAA 727
Query 692 CGGTGTTTGGAATCGCCTACATGTTTGTCCACGATGGTCTGGTGCACAAGCGTTTCCCTG 751
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 728 CGGTGTTTGGAATCGCCTACATGTTTGTCCACGATGGTCTCGTGCACAAGCGTTTCCCTG 787
Query 752 TAGGTCCCATCGCCGACGTCCCTTACCTCCGGAAGGTCGCCGCCGCTCACCAGTTACATC 811
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 788 TAGGTCCCATCGCCGACGTCCCTTACCTCCGAAAGGTCGCCGCCGCTCACCAGCTACATC 847
Query 812 ACACAGACAAATTCAATGGTGTACCATATGGACTGTTTCTTGGACCCAAGGAATTGGAAG 871
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 ACACAGACAAGTTCAATGGTGTACCATATGGACTGTTTCTTGGACCCAAGGAATTGGAAG 907
Query 872 AAGTTGGAGGAAATGAAGAGTTAGATAAGGAGATTAGTCGGAGAATCAAATCGTACAAAA 931
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 908 AAGTTGGAGGAAATGAAGAGTTAGATAAGGAGATTAGTCGGAGAATCAAATCATACAAAA 967
Query 932 AGGCCTCCGGTTCCGGGTCCA---C---TTCTTGACTTCAAACAAGTTTTAAATCCCAAA 985
||||||| || |||||||| | | |||||||||| |||||||||||||||||||||
Sbjct 968 AGGCCTCGGGCTCCGGGTCGAGTTCGAGTTCTTGACTTTAAACAAGTTTTAAATCCCAAA 1027
Query 986 TTCGtttttttGTCTTCTGT--T-ATCATCATCCTAAGACGGTCTATGTTGATAAATCCT 1042
||| |||||||||||||||| | || |||||| ||||||||||||||||||||||||||
Sbjct 1028 TTC-TTTTTTTGTCTTCTGTCATTATGATCATCTTAAGACGGTCTATGTTGATAAATCCT 1086
Query 1043 ATATGCCGATTTTGATTTTAATGATTATTTTTAAAAAATATAAATAG-TCTAATTAATTA 1101
|||||||||||||||||||||||| |||||| |||||||||||||| ||| || ||
Sbjct 1087 ATATGCCGATTTTGATTTTAATGAATATTTT-AAAAAATATAAATACCTCTCTTTC-TTG 1144
Query 1102 TA-TAGCAATTGTGCGTGTA--A-GCACTGTAGCGACGATTGACATATTACGTTGTTTGT 1157
| | | | ||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1145 CAATTGTATTTGTGCGTGTAGCAAGCACTGTAGCGACGATTGACATATTACGTTGTTTGT 1204
Query 1158 TT 1159
||
Sbjct 1205 TT 1206
> AT5G52570.1 | Symbols: BETA-OHASE 2, B2, CHY2, BCH2 | beta-carotene
hydroxylase 2 | chr5:21334793-21337002 REVERSE LENGTH=1145
Length=1145
Score = 749 bits (405), Expect = 0.0
Identities = 567/647 (88%), Gaps = 4/647 (1%)
Strand=Plus/Plus
Query 290 AGAAATTGGA-AAGGAAGAAATCAGAGAGGTCCACTTATCTAATCGCTGCAGTGTTGTCA 348
||||| ||| || ||||||||||||||||| ||||||| |||| || || ||| ||||
Sbjct 366 AGAAAGCGGAGAA-GAAGAAATCAGAGAGGTTCACTTATTTAATAGCAGCTGTGATGTCG 424
Query 349 AGCTTTGGTATCACTTCTATGGCTGTTATGGCTGTTTACTACAGATTCTCTTGGCAAATG 408
|||||||||||||||||||||||| | ||||||||||| ||| |||| ||||||||||||
Sbjct 425 AGCTTTGGTATCACTTCTATGGCTATAATGGCTGTTTATTACCGATTTTCTTGGCAAATG 484
Query 409 GAGGGAGGTG-AGATCTCAATGTTGGAGATGTTTGGTACATTTGCTCTCTCTGTTGGTGC 467
||||||||| || | || |||| ||||||||||||||||||||||| || ||||||||
Sbjct 485 AAGGGAGGTGAAG-TGTCTGTGTTAGAGATGTTTGGTACATTTGCTCTTTCCGTTGGTGC 543
Query 468 TGCGGTTGGTATGGAATTTTGGGCAAGATGGGCTCATAGAGCTCTCTGGCACGCTTCTCT 527
||| ||||| ||||| ||||||||||||||||||||||||||||| ||||| | |||| |
Sbjct 544 TGCCGTTGGGATGGAGTTTTGGGCAAGATGGGCTCATAGAGCTCTTTGGCATGATTCTTT 603
Query 528 ATGGAATATGCATGAGTCACATCACAAACCAAGAGAAGGACCGTTTGAGTTAAACGATGT 587
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 604 ATGGAACATGCATGAGTCACATCACAAACCAAGAGAAGGAGCGTTTGAGTTAAACGATGT 663
Query 588 TTTTGCTATAGTGAACGCTGTTCCAGCGATTGGTCTCCTCTCTTATGGATTCTTCAATAA 647
||||||||| ||||| ||||| ||||||||||| |||| |||||||||||| |||||
Sbjct 664 GTTTGCTATAACAAACGCGGTTCCTGCGATTGGTCTACTCTATTATGGATTCTTGAATAA 723
Query 648 AGGACTCGTTCCTGGTCTCTGCTTTGGCGCCGGGTTAGGAATAACGGTGTTTGGAATCGC 707
|||||| ||||||||||||||||| || ||||| | ||||||||| |||||||||| ||
Sbjct 724 AGGACTTGTTCCTGGTCTCTGCTTCGGTGCCGGACTGGGAATAACGATGTTTGGAATGGC 783
Query 708 CTACATGTTTGTCCACGATGGTCTGGTGCACAAGCGTTTCCCTGTAGGTCCCATCGCCGA 767
|||||||| || |||||||| || ||||||||| | ||||||||||||||||| ||| |
Sbjct 784 TTACATGTTCGTTCACGATGGACTTGTGCACAAGAGATTCCCTGTAGGTCCCATTGCCAA 843
Query 768 CGTCCCTTACCTCCGGAAGGTCGCCGCCGCTCACCAGTTACATCACACAGACAAATTCAA 827
||| |||||||| || ||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 844 CGTTCCTTACCTTCGAAAGGTCGCCGCCGCTCACCAGCTACACCACACAGACAAATTCAA 903
Query 828 TGGTGTACCATATGGACTGTTTCTTGGACCCAAGGAATTGGAAGAAGTTGGAGGAAATGA 887
|||||||||||||| |||||||||||||| |||||| | |||||||| |||||||| ||
Sbjct 904 AGGTGTACCATATGGGCTGTTTCTTGGACCAAAGGAAGTAGAAGAAGTGGGAGGAAAAGA 963
Query 888 AGAGTTAGATAAGGAGATTAGTCGGAGAATCAAATCGTACAAAAAGG 934
|||||| || || ||||| || ||||||||||||| ||||| ||||
Sbjct 964 AGAGTTGGAGAAAGAGATAAGCCGGAGAATCAAATTATACAACAAGG 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56877217485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5