BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492258
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25680.1 | Symbols: | PPPDE putative thiol peptidase family... 1768 0.0
AT4G25660.1 | Symbols: | PPPDE putative thiol peptidase family... 1206 0.0
> AT4G25680.1 | Symbols: | PPPDE putative thiol peptidase family
protein | chr4:13088166-13090161 FORWARD LENGTH=1227
Length=1227
Score = 1768 bits (957), Expect = 0.0
Identities = 1152/1242 (93%), Gaps = 30/1242 (2%)
Strand=Plus/Plus
Query 1 ACCACCACCGCCGCACCAGTTTCTTCTCCATCTCCTACGTCTGATTCTGAAATTGA-ATA 59
||||||||||||||||||||||||||| ||||||||| | | ||||||||||| | |
Sbjct 1 ACCACCACCGCCGCACCAGTTTCTTCTTCATCTCCTA---C-G--TCTGAAATTGAGA-A 53
Query 60 ATCGGGAGAAGAAGAAAGATAAAAGGGTCTAATCTTGTGCTTTTAGA-TTCATTTT-GGG 117
||| | ||||||||||||| || |||||||||||||| |||||| ||| |||| |||
Sbjct 54 ATC--G-GAAGAAGAAAGAT--AA--GTCTAATCTTGTGCCTTTAGATTTC-TTTTCGGG 105
Query 118 AAAGATCTAGTAGTCGTTTGATTCGTTTAAC-GA-AAGTGGATTTGGTACGAGTCTTTAG 175
|||||||||||| ||| |||||||| ||| || |||||||||||||||||||||||||
Sbjct 106 -GAGATCTAGTAGTTGTTGGATTCGTTAAACGGAGAAGTGGATTTGGTACGAGTCTTTAG 164
Query 176 GTTTCCATCTTCACCAAAAGCTCTATATAGAAAGAATCTGCGAGCTCAATTTCGTAGG-A 234
|||||| |||||||||||||||||||||||| ||||||||||||||| ||| ||||| |
Sbjct 165 GTTTCCTTCTTCACCAAAAGCTCTATATAGAGAGAATCTGCGAGCTCTTTTTGGTAGGAA 224
Query 235 ACTAGGGTTCGTGTTTCTTGGTAAAGATAGAATCAATGACGGAGGTTGTTCTGCACATAT 294
| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 225 ATTAGGGTTCGTGTTGCTTGGTAAATATAGAATCAATGACGGAGGTTGTTCTGCATATAT 284
Query 295 ACGATGTGACGAACAGTGGATCGGAGAAGACTAACAACACCATTGTTCAGATCAATAGGT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 ACGATGTGACGAACAGTGGATCGGAGAAGACTAACAACACCATTGTTCAGATCAATAGGT 344
Query 355 TCTTCAAAGACGGGATCGGTCTTGGCGGTATATTCCACAGCGCCATTCAGGTATATGGAG 414
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 345 TCTTCAAAGACGGGATCGGTCTTGGCGGTATATTCCACAGCGCTATTCAGGTATATGGAA 404
Query 415 GTGATGAATGGTCTTACGGATATTGTGAACAAGGAACTGGTGTTTTCAGCTGCCCCAGTG 474
||||||||||||||||| |||||||||| |||||||||||| ||||||||||| ||||
Sbjct 405 ACGATGAATGGTCTTACGGGTATTGTGAACTAGGAACTGGTGTATTCAGCTGCCCGAGTG 464
Query 475 GAAAGAATCCAATGTACACATACCGTGAGAAAATCGTCCTTGGAAAAACAGATTGCACAA 534
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 465 GAAAGAATCCAATGTACACATACCGTGAGAAAATCGTCCTTGGCAAAACAGATTGCACAA 524
Query 535 TCTTCATGGTAAATCAGATGTTGCGTGAGCTCAGCAGGGAATGGCCAGGACACACTTATG 594
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 525 TCTTCATGGTGAATCAGATGTTGCGTGAACTCAGCAGGGAATGGCCTGGACACACTTATG 584
Query 595 ATTTGTTATCAAAAAATTGCAATCATTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGC 654
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 585 ATTTGTTGTCAAAAAATTGCAATCACTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGC 644
Query 655 CAAAGATCCCAGGTTGGGTGAATCGGTTTGCTAATGCTGGTGACACAGCCTTGGAAGTGG 714
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 645 CAAAGATCCCAGGTTGGGTTAATCGCTTTGCTAATGCTGGGGACACAGCCTTGGAAGTGG 704
Query 715 CAGGAAACACAGCGATGCGGATGAAGCAAGCCAAAACTGAACTCGTTTCAGCTAGTAAAG 774
||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 705 CAGGAAACACAGCAATGCGGATGAAGCAAGCCAAAACTGAACTTGTGTCAGCTAGTAAAG 764
Query 775 TGGCGTATCGCTTCCTCTCGAATGTTACATCGAACGTAACCAATGGCTCCAATGGCTCTC 834
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 765 TGGCTTATCGCTTCCTCTCGAATGTTACTTCGAACGTAACCAATGGCTCCAATGGCTCTC 824
Query 835 CTCAACGATCGGGAACTCTCAACAATTCAGACAGCGGGAACTTGAGATTGCAAGGTAGTT 894
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 CACAACGACCGGGAACTCTCAACAATTCAGACAGCGGGAACTTGAGATTGCAAGGTAGTT 884
Query 895 GGCTCAAAGGCTTACTTAACACAGCCAAACCCTCCACAAGTACAGAGATAGGGAACAAAG 954
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 885 GGCTCAAAGGCTTACTTAACACAGCCAAACCCTCCACTAGTACAGAGATAGGGAACAAAG 944
Query 955 AGGAAGATGCAAATCATGCAATCACCAGTCAGAAGAAACATAGCCGTGACTCTGATGTTC 1014
| |||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||
Sbjct 945 ATGAAGATGCAAATCATGCAGTCACCAATCAGAAGAAACAAAGCCGTGACTCTGATGTTC 1004
Query 1015 TACTGTTTCAGTAGCAACCGTACCGATCCACCACAACGCATTCGGTTAGCTGTATATCCA 1074
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1005 TACTGTTTCAGTAGCAACCGTACCGATCCACCACAATGCATTCGGTTAGCTGTATATCCA 1064
Query 1075 CCGGTCCAAAACTCACACACACTAGTCTCCTCGTCTGTACCCATTACTTTGTATCAACGC 1134
|||||| || | |||| ||| || ||||||||||||||||||||||| ||||||||||
Sbjct 1065 CCGGTCTAAGAGTCACGCAC--TATTCTCCTCGTCTGTACCCATTACTCTGTATCAACGT 1122
Query 1135 TGGAATCCA-TCAtttttttCCCTGCGTTTTTAGCTCAAATGTGTGCTTTTGTTAAGATC 1193
||||| || ||||||||| | || |||||||||||| |||||||||||||||||||
Sbjct 1123 TGGAA-CCTGTCATTTTTT-CT-TGAGTTTTTAGCTCAC--GTGTGCTTTTGTTAAGATC 1177
Query 1194 ATTCTCGGTTGTTGCGGTCATATCTTAACATCAAAAGGTTTA 1235
||||||| ||||| | |||| |||||||||||||||||||||
Sbjct 1178 ATTCTCGCTTGTTACTGTCAAATCTTAACATCAAAAGGTTTA 1219
> AT4G25660.1 | Symbols: | PPPDE putative thiol peptidase family
protein | chr4:13083407-13085188 FORWARD LENGTH=1237
Length=1237
Score = 1206 bits (653), Expect = 0.0
Identities = 866/967 (90%), Gaps = 22/967 (2%)
Strand=Plus/Plus
Query 134 TTT-GATTCGTTTAACG-AAAGTGGATTTGGTACGAGTCTTTAGGTTTCCATCTTCACCA 191
||| |||| ||| || | |||||||||||||||||| ||| ||||||||| ||||| |
Sbjct 135 TTTGGATTTGTTGAA-GAAAAGTGGATTTGGTACGATTCTATAGGTTTCCTTCTTC-TCT 192
Query 192 AAAGCTCTA-TATAGAAAGAATCTGCGAGCTCAATTTCGTAG-GAACTAGGGTTCGTGTT 249
||| ||| |||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct 193 GAAG--CTACTATAGAGAGAATCTGCGAGCTCAATTTCGTAGTAAATTAGGGTTCGTGTT 250
Query 250 TCTTGGTAAAGATAGAATCAATGACGGAGGTTGTTCTGCACATATACGATGTGACGAACA 309
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 251 TCTTGGTAAAGATAGAATCAATGGCGGAGGTTGTTCTGCACATATACGATGTGACGAACA 310
Query 310 GTGGATCGGAGAAGACTAACAACACCATTGTTCAGATCAATAGGTTCTTCAAAGACGGGA 369
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 311 GTGGATCAGAGAAGACTAACAACACCATAGTTCAGATCAATAGGTTCTTCAAAGACGGGA 370
Query 370 TCGGTCTTGGCGGTATATTCCACAGCGCCATTCAGGTATATGGAGGTGATGAATGGTCTT 429
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 371 TCGGTCTTGGCGGTATATTCCACAGCGCTATTCAGGTATATGGAAACGATGAATGGTCTT 430
Query 430 ACGGATATTGTGAACAAGGAACTGGTGTTTTCAGCTGCCCCAGTGGAAAGAATCCAATGT 489
| || ||||||||||||||||||||||| |||||||| || ||||| |||||||||||||
Sbjct 431 ATGGGTATTGTGAACAAGGAACTGGTGTGTTCAGCTGTCCTAGTGGCAAGAATCCAATGT 490
Query 490 ACACATACCGTGAGAAAATCGTCCTTGGAAAAACAGATTGCACAATCTTCATGGTAAATC 549
||||||| ||||||||||| || ||||| || |||||||| |||||||||||||||||||
Sbjct 491 ACACATATCGTGAGAAAATTGTTCTTGGGAAGACAGATTGTACAATCTTCATGGTAAATC 550
Query 550 AGATGTTGCGTGAGCTCAGCAGGGAATGGCCAGGACACACTTATGATTTGTTATCAAAAA 609
|||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 551 AGATCTTGCGTGAGCTCAGCAGGGAATGGCCAGGACACACTTATGATTTGCTGTCCAAAA 610
Query 610 ATTGCAATCATTTCTGCGATGTACTCTGTGACCGGCTTGGTGTGCCAAAGATCCCAGGTT 669
|||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||
Sbjct 611 ATTGCAATCACTTCTGCGATGTATTATGTGACCGCCTTGGTGTGCCAAAGATCCCAGGTT 670
Query 670 GGGTGAATCGGTTTGCTAATGCTGGTGACACAGCCTTGGAAGTGGCAGGAAACACAGCGA 729
|||||||||| |||||| ||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 671 GGGTGAATCGTTTTGCTCATGCTGGCGACACAGCCTTGGAAGTAGCAGGAAACACAGCAA 730
Query 730 TGCGGATGAAGCAAGCCAAAACTGAACTCGTTTCAGCTAGTAAAGTGGCGTATCGCTTCC 789
||||| | |||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 731 TGCGGGTAAAGCAAGCCAAAACTGAACTTGTTTCAGCCAGTAAAGTGGCTTATCGCTTCC 790
Query 790 TCTCGAATGTTACATCGAACGTAACCAATGGCTCCAATGGCTC---T--C-CTC-A-A-C 840
| ||||||||||| || ||| |||||||||| || |||||||| | | ||| | | |
Sbjct 791 TTTCGAATGTTACCTCAAACATAACCAATGGTTCAAATGGCTCCAGTGGCTCTCCACAGC 850
Query 841 GATCGGGAACTCTCAACAATTCAGACAGCGGGAACTTGAGATTGCAAGGTAGTTGGCTCA 900
| | |||||||||||||||||||||| |||| ||| |||||||||||||||||| | |
Sbjct 851 GGCCAGGAACTCTCAACAATTCAGACAATGGGAGCTTTAGATTGCAAGGTAGTTGGTTGA 910
Query 901 AAGGCT-TACTTAACACAGCCAAACCCTCCACAAGTACAGAGATAGGGAACAAAGAGGAA 959
|||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 AAGG-TATACTTAACACTGCCAAACCCTCCACAAGTACAGAGATAGGGAACAAAGAGGAA 969
Query 960 GATGCAAATCATGCAATCACCAGTCAGAAGAAA-CATAGCCGTGACTCTGATGTTCTACT 1018
||| |||||||| ||||||||| |||||| ||| || | |||||||||||||||||||||
Sbjct 970 GATACAAATCATACAATCACCAATCAGAA-AAAGCAGAACCGTGACTCTGATGTTCTACT 1028
Query 1019 GTTTCAGTAGCAACCGTACCGATCCACCACAACGCATTCGGTTAGCTGTATATCCACCGG 1078
||||||||||||| |||| |||||||| ||| | |||| ||| |||||||||||||
Sbjct 1029 ATTTCAGTAGCAACTGTACTGATCCACCCCAATGTATTCACTTA-CTGTATATCCACCTA 1087
Query 1079 TCCAAAA 1085
|||||||
Sbjct 1088 TCCAAAA 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60692458905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5