BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492262
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25650.2 | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like |... 1437 0.0
> AT4G25650.2 | Symbols: ACD1-LIKE, PTC52, TIC55-IV | ACD1-like
| chr4:13080901-13083197 REVERSE LENGTH=1844
Length=1844
Score = 1437 bits (778), Expect = 0.0
Identities = 881/930 (95%), Gaps = 10/930 (1%)
Strand=Plus/Plus
Query 793 GAGAAGGGGGGAAACCACTCGAAATTAACGTTAAAAAACTAGACAGCAAAGGGTTCTTTT 852
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 916 GAGAAGGGGGGAAACCACTCGAAATCAACGTTAAAAAACTAGACAACAAAGGGTTCTTTT 975
Query 853 CAAAACAAGAATGGGGTTATTCTAATTTTATTGCACCATGTGTTTATCGGTCTTCCACAG 912
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 976 CAAAACAAGAATGGGGTTATTCTAATTTTATTGCACCATGTGTGTATCGCTCTTCCACAG 1035
Query 913 ACCCTCTACCAGAGCAGGAACACGAGTATCCCGCACCAGCTGCGTCTGAGAAGGCGGCAT 972
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 1036 ACCCTCTACCAGAGCAGGAACATGAGTATCCCGCACCAGCTGCTTCTGACAAGGCGGCAT 1095
Query 973 TGTCAAAGCGCAGATTGTCTTTGATCTTTATATGTATTCCGGTCAGCCCAGGTCGCAGTA 1032
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1096 TGTCAAAGCGGAGATTGTCTTTGATCTTTATATGTATTCCGGTCAGTCCAGGTCGTAGTA 1155
Query 1033 GACTGATATGGACATTCCCGAGGAATTTTGGTGTATTTATTGATAAGATTGTTCCGAGAT 1092
| ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1156 GGCTGATATGGACGTTCCCGAGGAATTTTGGTGTATTTATTGATAAGATTGTCCCTAGAT 1215
Query 1093 GGGTGTTTCACATTGGTCAAAACACGATTCTAGACTCAGATTTGCACCTCCTTCATGTAG 1152
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1216 GGGTGTTTCACATTGGTCAAAATACGATTCTAGACTCAGATTTGCACCTCCTTCATGTAG 1275
Query 1153 AGGAGCGGAAGATACTGGAGAGAGGCCCCAAAAACTGGCAAAAAGCTTGCTTTATCCCAA 1212
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1276 AGGAGCGGAAGATACTGGAGAGAGGCCCTGAAAACTGGCAAAAAGCTTGCTTTATCCCAA 1335
Query 1213 CAAAATCAGACGCTAATGTGGTTACATTCAGGAGATGGTTTAACAAGTACAGCGAGGCTC 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 CAAAATCAGACGCTAATGTGGTTACATTCAGGAGATGGTTTAACAAGTACAGCGAGGCTC 1395
Query 1273 AAGTCGATTGGAGAGGAAAGTTTGATCCATCTCTTCTTCCTCCTACACCTCCCCGAGAAC 1332
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1396 GAGTCGATTGGAGAGGAAAGTTTGATCCATTTCTTCTTCCTCCTACGCCTCCCCGAGAAC 1455
Query 1333 AGCTCTTCGACAGGTATTGGTCACATGTTGAGAACTGCAGCAGCTGCAAGAAAGCTCACA 1392
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1456 AGCTCTTCGACAGGTATTGGTCGCATGTTGAGAACTGCAGCAGCTGCAAGAAAGCTCACA 1515
Query 1393 AATATCTCAATGCGCTAGAGGTGATCTTACAAATCGCATCCGTTGCTATGATCGGAGTCA 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 AATATCTCAATGCGCTAGAGGTGATCTTACAAATCGCATCCGTTGCTATGATCGGAGTCA 1575
Query 1453 TGGCCGTGATGAAGCAAGCCACAACGTCGAATGTGGCTAGAATTGCAGTGCTTGTGGCGG 1512
|||| ||| |||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 1576 TGGCGGTGTTGAAGCAAACGACAATGTCGAATGTGGCTAGAATTGCAGTGCTTGTGGCGG 1635
Query 1513 CTGTTTTAAGTTTTGCCGCTTCAAAGTTGCTATCACACTTCATCTACAAGACATTCCATT 1572
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1636 CTGTTTTAAGTTTTGCAGCTTCAAAGTGGCTATCACACTTCATCTACAAGACATTCCATT 1695
Query 1573 ACCATGACTACAATCATGCTCTTGTTTGAAATGAATATTGGTGTTCGTA-T----ATATA 1627
||||||||||||| |||||| |||||||||||| ||||||||||| ||| | |||||
Sbjct 1696 ACCATGACTACAACCATGCTGTTGTTTGAAATGTATATTGGTGTTTGTACTTCGTATATA 1755
Query 1628 TACTCTTTGGATATATTCAGTCTACATGGTGT---ACATAACACTTATACA-AACACTAA 1683
||||| | |||| ||||||||| ||||||||| |||||||| ||||||| || |||||
Sbjct 1756 TACTCATCGGATGTATTCAGTCCACATGGTGTTGTACATAACAGTTATACAGAA-ACTAA 1814
Query 1684 TTCTTGTATCTATACCGTTTACTAATATTC 1713
|||||| |||||||||||||||||| ||||
Sbjct 1815 TTCTTGAATCTATACCGTTTACTAACATTC 1844
Score = 1201 bits (650), Expect = 0.0
Identities = 759/809 (94%), Gaps = 17/809 (2%)
Strand=Plus/Plus
Query 1 CTTCTTCTCTCCGGTTGTCACCACCACACAACGCCATGGAAGCTGCTCTTGCTGCATGCG 60
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 10 CTTCGTCTCTCCGGTTGTTACCACCACACAACGCCATGGAAGCTGCTCTTGCTGCATGCG 69
Query 61 CTCTTCCATCGCTCCGAATTCTCAAAACGAAACCAAGATTCAGATGTTCCTTCTCCAATC 120
||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 70 CTCTTCCATCGCTCCGAATTCTCAATACGAAACCTCGTTTCAGATGTTCCTTCTCCAATC 129
Query 121 CAAGACTACCCATTTCTCCAAACTCCCTTATCATCGGCAAACCAAGTCGATTCACAACCG 180
|||| |||||||||||||| || |||||||||| | ||||| ||||||||||||||||||
Sbjct 130 CAAGCCTACCCATTTCTCCTAATTCCCTTATCACCCGCAAATCAAGTCGATTCACAACCG 189
Query 181 CAGTATCATCACCA--A-CATCATCA-AC-C-AC-T--ACG-----T-CGCCGGAGTCTG 225
|||||||||||||| | |||||||| | | || | ||| | | ||||| |||
Sbjct 190 CAGTATCATCACCACCATCATCATCAGCCGCTACGTCAACGAATTCTCCACCGGAACCTG 249
Query 226 -AGACCCGATTCGAATCCGGGTCGGATAAGTTCGATTGGTACGCGAATTGGTATCCGGTG 284
|| ||| ||||||| |||||||||||||||||||||||||||| |||||||| || |||
Sbjct 250 AAG-CCCTATTCGAACCCGGGTCGGATAAGTTCGATTGGTACGCTAATTGGTACCCAGTG 308
Query 285 ATGCCAATTTGCGATCTTGACAAGAAGGTTCCACATGGGAAGAAAGTTATGGGGATTGAT 344
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 309 ATGCCAATTTGCGATCTTGACAAGAAGGTTCCTCATGGGAAGAAAGTTATGGGGATTGAT 368
Query 345 TTGGTGGTTTGGTGGGATAGGAACGACAAGCAATGGAAAGTGATGGATGACACGTGTCCT 404
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 369 TTGGTTGTTTGGTGGGATAGGAACGAGAAGCAATGGAAAGTGATGGATGACACGTGTCCT 428
Query 405 CATCGTCTTGCTCCTTTGTCTGATGGAAGGATTGATCAATGGGGGAGGTTGCAATGTGTT 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 CATCGTCTTGCTCCTTTGTCTGATGGAAGGATTGATCAATGGGGGAGGTTGCAATGTGTT 488
Query 465 TATCATGGATGGTGCTTTAATGGATCCGGTGACTGTAAACTCATTCCTCAAGCTCCTCCT 524
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 489 TATCATGGATGGTGCTTTAATGGTTCCGGTGACTGTAAACTCATTCCTCAAGCTCCTCCT 548
Query 525 GATGGACCTCCGGTCCACACTTTCAGGCAAGCTTGTGTAGCTGTTTATCCAAGTACTGTG 584
||||| ||||||||||||||||||| ||||||||||||||||||||| || |||||||||
Sbjct 549 GATGGTCCTCCGGTCCACACTTTCAAGCAAGCTTGTGTAGCTGTTTACCCGAGTACTGTG 608
Query 585 CAGCATGAGATCATTTGGTTTTGGCCAAACAGTGATCCAAAGTACAAAAACATTATTGAA 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CAGCATGAGATCATTTGGTTTTGGCCAAACAGTGATCCAAAGTACAAAAACATTATTGAA 668
Query 645 ACCAACAAGCCTCCTTACATTCCAGAGTTAGAAGACCCATCATTCACTAAGTTGATGGGG 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 ACCAACAAGCCTCCTTACATTCCAGAGTTAGAAGACCCATCATTCACTAAGTTGATGGGG 728
Query 705 AATCGCGATATTCCTTACGGGTATGATGTCTTGGTGGAAAACCTCATGGACCCGGCTCAT 764
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 729 AATCGTGATATTCCTTACGGGTACGATGTCTTGGTGGAAAACCTCATGGACCCGGCTCAT 788
Query 765 GTTCCCTATGCACATTATGGACTAATGCG 793
||||| ||||||||||||||||| |||||
Sbjct 789 GTTCCTTATGCACATTATGGACTGATGCG 817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84688319415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5