BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492264
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25630.1 | Symbols: FIB2, ATFIB2 | fibrillarin 2 | chr4:1307... 1748 0.0
AT5G52470.1 | Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 | fibr... 852 0.0
> AT4G25630.1 | Symbols: FIB2, ATFIB2 | fibrillarin 2 | chr4:13074133-13076429
FORWARD LENGTH=1293
Length=1293
Score = 1748 bits (946), Expect = 0.0
Identities = 1153/1246 (93%), Gaps = 42/1246 (3%)
Strand=Plus/Plus
Query 1 TGTATAAAAACACTTTCGAGCGCAGCTTCTTCGCCATCGGCATTCTCTCTCTCATTGAAA 60
||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| |||
Sbjct 2 TGTATAAAAACACTTGCGAGCGCAGCTTCATCGCCATCGCCATTCTCTCTCTCATCAAAA 61
Query 61 GCTTTTCTCCTTGATTTTCGCATTCTTTAGAGACTTAACGCAAAGATGAGACCTCCTCTA 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 62 GCTTTTCTCCTTGATTTTCGCATTCTTTAGAGTCTTAACGCAAAGATGAGACCTCCTCTA 121
Query 121 ACTGGAA---GTGGTGGGTTCAGTGGTGGAAGAGGCCgtggtggatacagcggtggtaga 177
||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 122 ACTGGAAGTGGTGGTGGGTTCAGTGGTGGAAGAGGGCGTGGTGGATACAGTGGTGGTAGA 181
Query 178 ggtgacggtggtttcagtggtggtcgaggtggcggtggt--A-GAGGAGGAAGAGGTTTT 234
||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 182 GGTGACGGTGGATTCAGTGGTGGTCGAGGTGGCGGTGGTAGAGGAGGAGGAAGAGGTTTC 241
Query 235 AGCGACC---GTGGTCGCGGCAGAGGAAGAGGACCACCAGGCCGTGGTACTCGCGGCGGC 291
||||||| ||||||||||||||||||||||||||||| | ||||| |||||||||||
Sbjct 242 AGCGACCGTGGTGGTCGCGGCAGAGGAAGAGGACCACCACGTGGTGGTGCTCGCGGCGGC 301
Query 292 AGAGGACCACCAGGCCGTGGAGGCATGAAAGGAGGAAGCAAAGTGCTTGTGGAACCTCAC 351
||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 302 AGAGGACCAGCTGGCCGTGGAGGCATGAAAGGAGGAAGCAAAGTGATTGTGGAACCTCAC 361
Query 352 AGACACGCAGGAGTGTTCATTGCAAAGGGTAAAGAAGATGCTCTTGTTACCAAGAACTTG 411
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 362 AGACACGCAGGAGTGTTCATTGCAAAGGGTAAAGAAGATGCCCTTGTTACCAAGAATTTG 421
Query 412 GTTCCTGGTGAAGCTGTCTACAATGAGAAGAGAATCTCTGTTCAGAACGAAGATGGAACT 471
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 422 GTTCCTGGTGAAGCTGTCTACAACGAGAAGAGAATCTCTGTTCAGAACGAAGATGGAACC 481
Query 472 AAGGTTGAATACAGAGTTTGGAATCCTTTCCGTTCTAAGTTGGCAGCTGCTATTCTCGGC 531
||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 482 AAGACTGAATACAGAGTTTGGAATCCTTTCCGTTCGAAGTTGGCTGCTGCTATTCTTGGT 541
Query 532 GGTGTTGATAACATCTGGATTAAACCTGGTGCTAAAGTTCTATACCTTGGTGCTGCTTCT 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GGTGTTGATAACATCTGGATTAAACCTGGTGCTAAAGTTCTATACCTTGGTGCTGCTTCT 601
Query 592 GGAACCACAGTCTCTCATGTGTCTGATCTTGTTGGCCCTGAGGGATGTGTGTACGCGGTT 651
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 602 GGAACCACAGTCTCTCATGTGTCTGATCTTGTTGGCCCTGAGGGGTGTGTGTACGCGGTT 661
Query 652 GAGTTTTCTCATAGAAGTGGTAGAGATTTGGTGAACATGGCAAAGAAGAGAACCAATGTT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GAGTTTTCTCATAGAAGTGGTAGAGATTTGGTGAACATGGCAAAGAAGAGAACCAATGTT 721
Query 712 ATTCCAATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTAGGCATGGTT 771
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 722 ATTCCAATCATCGAGGATGCTAGACACCCAGCTAAATACAGAATGCTTGTAGGCATGGTT 781
Query 772 GATGTTATCTTCTCTGATGTTGCCCAGCCAGATCAGGCTAGGATCTTGGGTTTGAATGCA 831
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 782 GATGTTATCTTCTCTGATGTTGCTCAGCCAGATCAGGCTAGGATCTTGGCTTTGAATGCA 841
Query 832 TCATACTTCCTCAAATCAGGAGGACACTTTGTGATCTCAATCAAGGCAAACTGTATTGAC 891
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 842 TCATACTTCCTCAAGTCAGGAGGACACTTTGTGATCTCAATAAAGGCAAACTGTATCGAC 901
Query 892 TCAACGGTTCCAGCAGAAGCTGTGTTCCAGAATGAAGTGAAGAAGCTTCAACAGGAGCAA 951
|| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 902 TCCACCGTTCCAGCAGAAGCTGTGTTCCAGACTGAAGTGAAGAAGCTTCAACAGGAGCAA 961
Query 952 TTCAAGCCAGCTGAGCAAGTGACACTTGAGCCATTCGAGCGTGATCATGCCTGTGTCGTT 1011
||||| ||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct 962 TTCAAACCAGCTGAGCAAGTGACGCTTGAGCCATTTGAGCGTGACCATGCATGTGTCGTT 1021
Query 1012 GGTGGCTACCGTATGCCTAAGAAGGCCAA-GGCTGCTACCGCTGCTTAGAAGTTTT-T-- 1067
|||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |
Sbjct 1022 GGTGGCTACCGTATGCCTAAGAAG-CCAAAGGCTGCTACTGCTGCTTAGAAGTTTTCTAC 1080
Query 1068 TC--C-C-------AGTTCCTCAGATTTTGCAGTGTCTCGGTCTCTTTAGAATCTGTA-G 1116
|| | | ||| ||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1081 TCTACGCTCTTCCCAGTACCTCAGATTTTGCTTTGTCTCGGTCTCTTTAGAATCTGTATG 1140
Query 1117 G-----G--TTTATCTTAAATTCTGAGTTTTTGTAATCATTTTGAACCCTGGTTTTGTTC 1169
| | ||||||||||||| |||| ||| |||||||||||||||||||||| |||||
Sbjct 1141 GTTTTAGGGTTTATCTTAAATTTTGAGCTTT-GTAATCATTTTGAACCCTGGTTATGTTC 1199
Query 1170 ACTTGGCT---A-----A-CTTTTTCGACAAGGTTTTGATTTATGG 1206
|||||||| | | ||||||||||||| ||||||| |||||
Sbjct 1200 ACTTGGCTTCCAGCGCTAACTTTTTCGACAAGTTTTTGATATATGG 1245
> AT5G52470.1 | Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 | fibrillarin
1 | chr5:21294187-21296704 FORWARD LENGTH=1225
Length=1225
Score = 852 bits (461), Expect = 0.0
Identities = 651/744 (88%), Gaps = 7/744 (1%)
Strand=Plus/Plus
Query 293 GAGGACCACCAGGCCGTGGAGGCATGAAAGGAGGAAGCAAAGTGCTTGTGGAACCTCACA 352
|||||||||| |||||||| ||||||||||||||||||||| |||| || |||||||
Sbjct 270 GAGGACCACC---TCGTGGAGGAATGAAAGGAGGAAGCAAAGTGATTGTTGAGCCTCACA 326
Query 353 GACACGCAGGAGTGTTCATTGCAAAGGGTAAAGAAGATGCTCTTGTTACCAAGAACTTGG 412
|||| || |||||||| ||||| ||||||||||||||||||||||| || ||||| ||||
Sbjct 327 GACATGCGGGAGTGTTTATTGCTAAGGGTAAAGAAGATGCTCTTGTCACTAAGAATTTGG 386
Query 413 TTCCTGGTGAAGCTGTCTACAATGAGAAGAGAATCTCTGTTCAGAACGAAGATGGAACTA 472
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 387 TTCCTGGTGAAGCTGTTTACAATGAGAAGAGAATCTCTGTTCAGAATGAAGATGGAACTA 446
Query 473 AGGTTGAATACAGAGTTTGGAATCC-TTTCCGTTCTAAGTTGGCAGCTGCTATTCTCGGC 531
||||||||||||||||||||||||| ||| | |||||||| || ||||| ||||| ||
Sbjct 447 AGGTTGAATACAGAGTTTGGAATCCGTTTA-GATCTAAGTTAGCTGCTGCAATTCTTGGT 505
Query 532 GGTGTTGATAACATCTGGATTAAACCTGGTGCTAAAGTTCTATACCTTGG-TGCTGCTTC 590
||||| || ||||| ||||| ||||||||||| |||||||| ||| |||| |||||||||
Sbjct 506 GGTGTCGACAACATTTGGATCAAACCTGGTGCCAAAGTTCTTTAC-TTGGGTGCTGCTTC 564
Query 591 TGGAACCACAGTCTCTCATGTGTCTGATCTTGTTGGCCCTGAGGGATGTGTGTACGCGGT 650
||| ||||| ||||||||||| ||||| || |||||||||||||||||||| || || ||
Sbjct 565 TGGGACCACTGTCTCTCATGTTTCTGACCTCGTTGGCCCTGAGGGATGTGTTTATGCTGT 624
Query 651 TGAGTTTTCTCATAGAAGTGGTAGAGATTTGGTGAACATGGCAAAGAAGAGAACCAATGT 710
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 625 TGAGTTTTCTCATAGAAGTGGTAGAGATTTGGTGAACATGGCCAAGAAGAGAACTAACGT 684
Query 711 TATTCCAATCATCGAGGATGCTAGACACCCTGCTAAATACAGAATGCTTGTAGGCATGGT 770
|||||||||||| || ||||||||||| || ||||| ||||||||||| || ||||||||
Sbjct 685 TATTCCAATCATTGAAGATGCTAGACATCCGGCTAAGTACAGAATGCTCGTGGGCATGGT 744
Query 771 TGATGTTATCTTCTCTGATGTTGCCCAGCCAGATCAGGCTAGGATCTTGGGTTTGAATGC 830
|||||| || |||||||||||||| |||||||||||||| || ||||||| |||||||
Sbjct 745 TGATGTCATATTCTCTGATGTTGCTCAGCCAGATCAGGCAAGAATCTTGGCCCTGAATGC 804
Query 831 ATCATACTTCCTCAAATCAGGAGGACACTTTGTGATCTCAATCAAGGCAAACTGTATTGA 890
|||| ||||||||| | || ||||||||||| |||||||||||||| |||||||| ||
Sbjct 805 CTCATTTTTCCTCAAAACTGGTGGACACTTTGTTATCTCAATCAAGGCCAACTGTATCGA 864
Query 891 CTCAACGGTTCCAGCAGAAGCTGTGTTCCAGAATGAAGTGAAGAAGCTTCAACAGGAGCA 950
||| || ||| |||||||||| || ||||||| || ||||||||||| ||||| |||||
Sbjct 865 CTCTACAGTTGCAGCAGAAGCAGTCTTCCAGAGCGAGGTGAAGAAGCTGCAACAAGAGCA 924
Query 951 ATTCAAGCCAGCTGAGCAAGTGACACTTGAGCCATTCGAGCGTGATCATGCCTGTGTCGT 1010
|| |||||||| || || ||||| || ||||| || |||||||| ||||||||||| ||
Sbjct 925 GTTTAAGCCAGCAGAACAGGTGACTCTCGAGCCGTTTGAGCGTGACCATGCCTGTGTTGT 984
Query 1011 TGGTGGCTACCGTATGCCTAAGAA 1034
|||||| ||||| ||||| |||||
Sbjct 985 TGGTGGTTACCGCATGCCGAAGAA 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5