BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492265
Length=1750
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25620.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 1387 0.0
> AT4G25620.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr4:13067186-13069679 REVERSE LENGTH=1994
Length=1994
Score = 1387 bits (751), Expect = 0.0
Identities = 915/989 (93%), Gaps = 31/989 (3%)
Strand=Plus/Plus
Query 159 TATTTA-TTCTCTCATTCttttcttttcggattttgtttgtgttt-tgattttACCGCCT 216
|||| | ||||||| | | ||| ||||| ||||||||||||||| |||||||||| ||
Sbjct 244 TATTCATTTCTCTC-GT-TATTCGTTTCGTATTTTGTTTGTGTTTATGATTTTACCTCC- 300
Query 217 TGTTA-TTGCTATGAGATCAAGAGGTGGTGAAACAAAAGTTGA--AAATCTGGATGTTAT 273
||| ||||| ||||||||||| ||||||||| ||||||| | |||||||||||||||
Sbjct 301 --TTAGTTGCTGTGAGATCAAGAAGTGGTGAAAGAAAAGTT-ACTAAATCTGGATGTTAT 357
Query 274 TTGATTGTCGTCGTTGGTCTTGAGATATGAGGAGC---------------GTCGACACGG 318
|||||||||||||||||||||||| |||||||||| |||||||| |
Sbjct 358 TTGATTGTCGTCGTTGGTCTTGAGCTATGAGGAGCGTTAATAATAGTAGTGTCGACACCG 417
Query 319 TGAACGCCGCCGCTTCCGCCATCGTCTCCGCCGAGTCTAGAACACAACCGTCGTCGGTTC 378
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 418 TGAACGCCGCCGCTTCCGCCATCGTCTCCGCTGAGTCTAGAACACAACCGTCGTCGGTTC 477
Query 379 ATAAAAAATGGGGAAGCTGGTGGAGCTTGTACTTGTGTTTTGGATCCAAGAAGAACAATA 438
| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 478 AGAAAAAAAGGGGAAGCTGGTGGAGCTTGTACTGGTGTTTTGGATCCAAGAAGAACAATA 537
Query 439 AGCGGATTGGCCACGCGGTGCTTGTACCCGAACAAGCTGCATCCGGAGCTGCGGTGGCTC 498
| |||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 538 AAAGGATAGGCCACGCGGTGCTTGTACCCGAACCAGCTGCATCAGGAGCTGCGGTGGCTC 597
Query 499 CAGTCCAAAACTCTTCTAGCAATTCAACTTCAATGTTCATGCCCTTTATAGCTCCTCCTT 558
|||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 598 CAGTCCAAAACTCTTCGAGCAATTCTACTTCAATATTCATGCCCTTTATAGCTCCTCCTT 657
Query 559 CATCTCCTGCTTCGTTTCTGCCATCAGGTCCTCCATCTGTGTCACATACTCCTGGTCCTG 618
||||||||||||| |||||||||||||||||||| |||| |||||||||||||| |||||
Sbjct 658 CATCTCCTGCTTCCTTTCTGCCATCAGGTCCTCCCTCTGCGTCACATACTCCTGATCCTG 717
Query 619 GTCTACTTTGTTCCCTAACCGTCAATGAACCGCCTTCAGCCTTTACTATTGGACCTTACG 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 718 GTCTACTTTGTTCCCTAACCGTCAATGAACCGCCTTCAGCCTTTACTATTGGACCATACG 777
Query 679 CTCATGAAACTCAACCTGTTACTCCTCCAGTGTTCTCTGCTTTCACAACGGAACCATCCA 738
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 778 CTCATGAGACTCAACCTGTTACTCCTCCAGTGTTCTCTGCTTTCACAACGGAACCCTCCA 837
Query 739 CCGCGCCATTCACTCCACCTCCTGAATCACCTTCTTCGCCTGAAGTGCCTTTTGCTCAGT 798
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 838 CCGCGCCATTCACGCCACCTCCTGAATCACCTTCTTCCCCTGAAGTGCCTTTTGCTCAGT 897
Query 799 TACTTACATCTTCACTGGAAAAGGCTAGGAGGAACA-TCGGTGGCGGAATGAATCAGAAG 857
|||||||||||||| |||||| |||||||||||||| | ||||| |||||||||||||||
Sbjct 898 TACTTACATCTTCATTGGAAAGGGCTAGGAGGAACAGT-GGTGGTGGAATGAATCAGAAG 956
Query 858 TTTTCAGCTGCACACTACGAGTTTAAGTCTCATCAAGTGTATCCTGGAAGTCCAGGTGGT 917
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 957 TTTTCAGCTGCACACTACGAGTTTAAGTCTTGTCAAGTGTATCCTGGAAGTCCAGGTGGT 1016
Query 918 AATCTAATCTCCCCTGGTTCAGGTACATCTTCTCCTTACCCAGGGAAATGCTCCATCATT 977
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 AATCTAATCTCTCCTGGTTCAGGTACATCTTCTCCTTACCCAGGGAAATGCTCCATCATC 1076
Query 978 GAGTTTCGTATCGGTGAACCTCCAAAGTTT-TTGGGGTTTGAGCACTTCACAGCGCGTAA 1036
|||||||||||||| ||||||||||||||| || || |||||||||||||||||||||||
Sbjct 1077 GAGTTTCGTATCGGCGAACCTCCAAAGTTTCTT-GGTTTTGAGCACTTCACAGCGCGTAA 1135
Query 1037 ATGGGGATCAAGATTCGGTTCTGGATCCATCACACCTGCTGGTCAAGGTTCAAGGTTGGG 1096
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1136 ATGGGGATCAAGATTCGGTTCTGGATCCATCACACCTGCTGGACAAGGTTCAAGGTTGGG 1195
Query 1097 TTCAGGTGCTCTGACTCCTGATGGTCTCA 1125
|||||||||| ||||||||||||| ||||
Sbjct 1196 TTCAGGTGCTTTGACTCCTGATGG-CTCA 1223
Score = 924 bits (500), Expect = 0.0
Identities = 594/638 (93%), Gaps = 12/638 (2%)
Strand=Plus/Plus
Query 1121 TCTCACACCACTTGAAGGCAGTCTTTTGGATAGTCAGATCACTGAGGTTGCGTCTTTAGC 1180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1289 TCTCACACCACTTGAAGGCAGTCTTTTGGATAGTCAGATCTCTGAGGTTGCGTCTTTAGC 1348
Query 1181 CAATTCGGACCACGGGTCATCAAGGCATAATGATGAAGCTGC-CGTGGTTCCTCACAGAG 1239
|||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct 1349 CAATTCGGACCACGGGTCGTCAAGGCATAATGATGAAGCT-CTCGTGGTTCCTCACAGAG 1407
Query 1240 TTTCTTTTGAGTTGACAGGTGAAGACGTAGCACGTTGTCTTGCAAGCAAGCTAAACCGAT 1299
||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 1408 TTTCTTTCGAGTTGACTGGTGAAGACGTTGCACGGTGTCTTGCAAGCAAGCTAAACCGTT 1467
Query 1300 CCGGTTCGCATGAAAGAGCGAGCGGCGAACACTTAAGACCAAACGGTTGTAAAACATCGG 1359
||||||| ||||||| ||| ||||||||||| |||||||||||| |||||||||| ||||
Sbjct 1468 CCGGTTCACATGAAAAAGCAAGCGGCGAACATTTAAGACCAAACTGTTGTAAAACGTCGG 1527
Query 1360 GAGAAACAGAGAGCGAACAGAGTCAGAAGCTAAGATCGTTTTCTACAGGCTCTAGCAAAG 1419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1528 GAGAAACAGAGAGCGAACAGAGTCAGAAGCTAAGATCGTTTTCTACAGGCTCTAACAAAG 1587
Query 1420 AATTCAAATTTGATAACACGAATGAAGAGATGATAGAGAAAGTTAGATCGGAGTGGTGGG 1479
||||||| ||||||| ||| ||||||||||||||||||||| || |||||||||||||||
Sbjct 1588 AATTCAAGTTTGATAGCACCAATGAAGAGATGATAGAGAAAATTCGATCGGAGTGGTGGG 1647
Query 1480 CGAATGAGAAGGTCGCCGGAAAAGGTGATCACAGTCCAAGAAACAGTTGGACTTTCTTTC 1539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 CGAATGAGAAGGTCGCCGGAAAAGGTGATCACAGTCCAAGAAACAGTTGGACTTTCTTTC 1707
Query 1540 CGGTCTTACGCTCTGGATCC-ACTT-G-ACaaaaaaaaaaGCCTTTTATCTTCTTCATTA 1596
| ||||||||||||||| | |||| | ||||| ||| | || ||||| |||||||||||
Sbjct 1708 CAGTCTTACGCTCTGGA-CATACTTAGCACAAAGAAATA-GC-TTTTACCTTCTTCATTA 1764
Query 1597 CCTCTAACATGGGAAGCAAATTCAGTG-TATGGTAAGATATTGGGGTCTAACAACTATAC 1655
|||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||
Sbjct 1765 CCTCTAACATGGGAAGCAAAGTCAGTGATATGGTAAGAGATTGGGGTCTAACAACTATAC 1824
Query 1656 ATATATA--GCTTTGCATTGTAGGTGTCTTTGTTCTTTGTACTGATAGTTATATAAAATA 1713
||||||| |||| | |||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1825 ATATATATAGCTTGGTATTGTAGGTGTCTTTGTTCTTTGTACTGTTAATTATATAAAATA 1884
Query 1714 GTTTAAACACATAA-TGGTAGACTTATCATTGACAAAA 1750
|||| ||||| ||| |||||||||||||||||||||||
Sbjct 1885 GTTTTAACACTTAAATGGTAGACTTATCATTGACAAAA 1922
Score = 178 bits (96), Expect = 2e-43
Identities = 108/114 (95%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 1 AATAATATTTTCATGGAAGCGCGTGGGTCCGAACCGTCAATTTAAGATGACGTGGCAAAA 60
|||||||| | ||||||||||||||||||| ||||||||| ||| |||||||||||||||
Sbjct 37 AATAATATATACATGGAAGCGCGTGGGTCCAAACCGTCAAATTATGATGACGTGGCAAAA 96
Query 61 TCTCGTGGGAAATTGAATGAAAACTGTAAAAGATAACGACCGGTGAGAGAGAGA 114
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 97 TCTCGTGGGAAATTGAATGAAAACTGTAAAAGATAACGACCGGTGACAGAGAGA 150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86545739580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5