BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492266
Length=2180
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25610.1 | Symbols: | C2H2-like zinc finger protein | chr4:... 3391 0.0
> AT4G25610.1 | Symbols: | C2H2-like zinc finger protein | chr4:13063264-13067228
FORWARD LENGTH=2361
Length=2361
Score = 3391 bits (1836), Expect = 0.0
Identities = 2075/2187 (95%), Gaps = 30/2187 (1%)
Strand=Plus/Plus
Query 1 CctcctctctccgaaattttctctcatttttctttcttcttctccttttttttGCGTCCC 60
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 40 CCTCCTCTCTCCGAAATTTTCTCTCATTTTTC--TC-TCTTCTCC--TTTTTTGCGTCCC 94
Query 61 ATCACTTTCTCGGATTTTCTCGGCGACTTTCTTTCGTTTCCCCACCTCCTCTGAATCCCC 120
||||||||||| ||||||||||||||||||||| || |||| | ||||||||||| |||
Sbjct 95 ATCACTTTCTCTGATTTTCTCGGCGACTTTCTTCCG--TCCCAAGCTCCTCTGAAT-CCC 151
Query 121 CTG-AGGATCGCTCTCGATTCTTCTCTTCTTCCTATTCTCCGCCCGATCTGTTACTGttt 179
| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 152 CAGAAGGATCGCTCTCGATTCTTCTCTTCCTCCTATTCTCCGCCCGATCTGTTACTG-TT 210
Query 180 tttttttttACTGTCAAATTCAATGGAGCTTGTGAAACAAGATGGGAATGATTCTGTCGA 239
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 211 TTTTTTTTTACTGTCGAATTCAATGGAGCTTGTGAAACAAGATGGGAATGATTCTCTCGA 270
Query 240 TATGCTTATCAGACGTGCGGTTGGAAAGGATCCGTTTCTTTCATTCCCTAGACCTGAAAA 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 271 TATGCTTATCAGACGTGCGGTTGGAAAGGATCCGTTTCTTTCCTTCCCTAGACCTGAAAA 330
Query 300 TAGTCCAGTCCAGCTTTTTCAACTTCTCCATACCTTAGAACGTCCAGGCTGGCCATTGCT 359
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 TACTCCTGTCCAGCTTTTTCAACTTCTCCATACCTTAGAACGTCCAGGCTGGCCATTGCT 390
Query 360 GACCCCTTTGAAGATACAAATGCAGAAGTGTGAAAAGTGCAGTAGGGAGTTTTGTTCTCC 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 391 GACCCCTTTGAAGATACAAATGCAGAAGTGTGAAAAGTGCAGTAGGGAGTTTTGCTCTCC 450
Query 420 TGTGAACTTTAGAAGACATAACCGCATGCATCGCCGTCAAAGGAAGCCTGAAAAGGATTC 479
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 451 TGTGAACTTTAGAAGACATAACCGCATGCATCGCCGTCAAAGAAAGCCGGAAAAGGATTT 510
Query 480 TGGTAAAGATAGGGATGCGCTGGGAGCCTTTTGGAATAAGCTCTCTGCAACTGATGCAAA 539
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 TGGCAAAGAGAGGGATGCGCTGGGAGCCTTTTGGAATAAGCTCTCTGCAACTGATGCAAA 570
Query 540 GGAGATTCTCTCATTAAAGAGCATGATGCTTGAGGATGTTCCTGGGGCATCAGTTGAGTC 599
||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 571 GGAGATTCTCTCAGTAAAGAGCATGATGCTTGAGGATATTCCTGGGGCATCAGTGGAGTC 630
Query 600 AGGATTAATGTCACTTATTGAAAAACCAGGATATACTGCTCTGCCACAATATTATCTAAG 659
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 631 AGGATTAATGTCACTTATCGAAAAACCAGGCTATACTGCTCTGCCACAATATTATCTAAG 690
Query 660 AGCTGGTTCTGGCCTTTTGGATATTCTCCAAGCTAGACCACCTAGGTTTCCAATTACTTC 719
|||||||||||||||||||||| ||||||| |||||||||||||| |||||||| ||||
Sbjct 691 AGCTGGTTCTGGCCTTTTGGATCTTCTCCAGGCTAGACCACCTAGACTTCCAATTTCTTC 750
Query 720 GCAGGAACTTTTTAGCATTCTTGATGATGCAAGTGAAAAAACTTTCCTGTGTAGCGAGGC 779
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 751 GCAGGAACTTTTTAGCATTCTTGATGATGCAAGTGAAAAAACTTTCCTGTCTAGCGAGGC 810
Query 780 TGCACCAATGCAAAAGTACATTTTTGACGGGGAAATAGGAAAAACTGTACTGGAGGCAAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 TGCACCAATGCAAAAGTACATTTTTGACGGGGAAATAGGAAAAACTGTACTGGAGGCAAA 870
Query 840 AAATGTTGTTGCTTGCGCAAGCTTCCTTCTGGAACAGCCATTGATTAAAGCATGGCTGGC 899
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 871 AAATGTTGTTGCTTGCGCAAGCTTCCTTCTGGAACAGCGATTGATTAAAGCATGGCTTGC 930
Query 900 TGACAAAGATGCGGAAGCTCTGAGGTGCCAAAATTTACTGGTTgaagaggaagaagctgc 959
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 TGACAAAGATGCTGAAGCTCTGAGGTGCCAAAATTTACTGGTTGAAGAGGAAGAAGCTGC 990
Query 960 tcaaagaagacaagctgagctcttggagaggaagaagaggaagaagctaaggcagaaaga 1019
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 TCGAAGAAGAAAAGCTGAGCTCTTGGAGAGGAAGAAGAGGAAGAAGCTAAGGCAGAAAGA 1050
Query 1020 gcagagagagaaggaccagaaaaaagatgctaaggaagacgagagCACCACATCAGAGGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 GCAGAGAGAGAAGGACCAGAAAAAAGATGCTAAGGAAGACGAGAGCACCACATCAGAGGA 1110
Query 1080 ACAAGAATATCCAGCTGAGTCATCAAGCCCGTTATCTGTAGCTTCTGATGCTGAGGCACA 1139
|||| |||||||||||||| |||||||||| |||||||||||||||||| ||||||||||
Sbjct 1111 ACAACAATATCCAGCTGAGCCATCAAGCCCTTTATCTGTAGCTTCTGATTCTGAGGCACA 1170
Query 1140 GAGACCAGATTCCATACCAATTGATGATTCTTCATCCCTCGAGGACCCTCAAGTTTTGGA 1199
|| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1171 GACACCAGATTCCTTACCAATTGATGATTCTTCATCCCTCGAGGAACCTCAAGTTTTGGA 1230
Query 1200 AACGAATAATGGGAGAAACGGTGAAACTCAAGCGCCAATGGTTGATGATGATGGCTTAGG 1259
||| |||||||| |||||| ||||||| |||| |||||||||||||| | |||||
Sbjct 1231 AACTAATAATGGAAGAAACAGTGAAACGCAAGTGCCAATGGTTGATG--G----CTTAGA 1284
Query 1260 CAATGGCCAAAACATGGAAAGGCGAAGTGGCCGTAGGCAAATGCAAAGATCACAACAGGG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 CAATGGCCAAAACATGGAAAGGCGAAGTGGCCGTAGGCAAATGCAAAGATCACAACAGGG 1344
Query 1320 AATGCCAAATGGATTCCATGCTAATCATGCACCAAAACTTGGAGGCATGCGAAAGAATGG 1379
|||||| ||||| ||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1345 AATGCCGAATGGGTTCCATGCTGATCATGCACCAAACCTTGGAGGCATGCGAAAGAATGG 1404
Query 1380 AACCAACAGAGACGCAATAGTCAATACTACTAAAGTTTGGAGCCGAAAATCCGATAACCC 1439
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1405 AACCAACAGAGACGCAAGAGCCAATACTACTAAAGTTTGGAGCCGAAAATCCGATAACCC 1464
Query 1440 CAAATTGATATCACAACATGCAGCAGTGACTCAGCAGGATCAAACAAAGATCAGCGAATT 1499
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1465 CAAATTGATATCACAACATGCAGCAGTGACTCAGCAGGATCAGACAAAGAGCAGCGAATT 1524
Query 1500 TAGAATTGGATCAGT-GAGTGTAACAATCCGAAACAGTGGAGAACATAACCAAACCAAAT 1558
|| | ||||||| || ||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1525 TATAGTTGGATC-GTTGAGTGTATCAATCCGAAACAGTGGCGAACATAACCAAACCAAAT 1583
Query 1559 GCAGTGAAGGGGAGGGAAGAACAAAGACTGTTGAGGCGAAACCCACATCTGAGCAATCAA 1618
|||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1584 GCAGTGAAGGGGAGAGAAGAACAAAGACTGTTGAGGTGAAACCCGCATCTGAGCAATCAA 1643
Query 1619 CTGTAAAAATATGGAGACCAGTGAGCAGTCAGGGAAGAAAAATCTCAACAGTCGATGAAA 1678
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct 1644 CTGTAAAAATATGGAGACCAGTGAGCAGTCAGGGAAGAAAAACCTCAACAGTCAATGGAA 1703
Query 1679 ACACAGGCAAAGAAGATAAGA-AGTCAAACTCAACT-CTACCCGAAGC-AAAGACCGCTC 1735
|||||| |||||||||||||| | |||||| ||||| | |||||||| ||| || ||||
Sbjct 1704 ACACAGACAAAGAAGATAAGAGA-TCAAACCCAACTAC-ACCCGAAGTGAAAAAC-GCTC 1760
Query 1736 ATCACATAAGCTTGCAGTTTAACAACCACGAAGCAAAGGCGTTTCTTGCAAAGAGATGGA 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1761 ATCACATAAGCTTGCAGTTTAACAACCACGAAGCAAAGGCGTTTCTTGCAAAGAGATGGA 1820
Query 1796 AAGAGGCAACCACTGCAGAACACGTGACACTGGTTCTCTCTCAGGAAACCGACATCTCGG 1855
||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| |
Sbjct 1821 AAGAGGCAACCTCTGCAGAACACGTGACATTGGTTCTGTCTCAGGAAACCGACATCTCAG 1880
Query 1856 GCAACAACACTCACGAATCCTCAAATGGTGTTATAACCGCAAGACCAAAGCTGAGGACGA 1915
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1881 GCAACAACACTCACGAGTCCTCAAATGGTGTTATAACCGCAAGATCAAAGCTGAGGACGA 1940
Query 1916 AACCCGAAAAGGGCACGAAGGTAAAGTATGTTCCAAAACAGAGGATTCCTTGAAAACTTG 1975
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1941 AAGCCGAAAAGGGCACAAAGGTAAAGTATGTTCCAAAACAGAGGATTCCTTGAAAACTTG 2000
Query 1976 AATACaaaaaaaaGACAATCCTGATTCTGGACCAGAGTATCATTCATTTTAGGTATACCA 2035
|| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 2001 AAAACAAAAA---GACAAGCCTGATTCTGGACCAGAGTATCATTCTTTTTAGGTATACCA 2057
Query 2036 AAAGTGCAGTGTTAGCGAGCGAGACAGAtcttttcttttgcttctagagagattttt-cc 2094
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||
Sbjct 2058 AAAGTGCAGTGTTAGCGAGCGAGACAGATATTTTCTTT-GCTTCTAGAGAGATTTTTTCC 2116
Query 2095 cattttaagagtcttcattcttt-cttttttttACTTCATATTCTTGGTAGACAGAGATT 2153
||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||
Sbjct 2117 CATTTTAAGAGTCTTCATTCTTTTCTTTTTTTGACTTCATATTCTTGGTAGAAAGAGATT 2176
Query 2154 GTTTTGTTATTTTGTTGACCttttttt 2180
|||||||||||||||||||||||||||
Sbjct 2177 GTTTTGTTATTTTGTTGACCTTTTTTT 2203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108131973930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5