BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492267
Length=1111
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25600.1 | Symbols: | Oxoglutarate/iron-dependent oxygenase... 1483 0.0
> AT4G25600.1 | Symbols: | Oxoglutarate/iron-dependent oxygenase
| chr4:13060659-13062595 FORWARD LENGTH=1165
Length=1165
Score = 1483 bits (803), Expect = 0.0
Identities = 1045/1154 (91%), Gaps = 47/1154 (4%)
Strand=Plus/Plus
Query 1 GTTCCTCGTTTCAGCGATGTAGCATTAGTA-CCAGT---GTGGAGCAATGGCTGGCCTTA 56
|||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||
Sbjct 7 GTTCCTCGTTTCAGCGATGTAGCAGTAGTACCCAGTGGAGTGGAGCAATGGCTTGCCTTA 66
Query 57 G-CGAAACCTTCCTAATTCTGATGATTATTATGTTTTCTTCGTCTTCTCCTTTCTGTTCC 115
| || || |||||| ||||||||||||| ||||| |||||||||| ||||||||||||||
Sbjct 67 GCCG-AATCTTCCTTATTCTGATGATTACTATGTCTTCTTCGTCTCCTCCTTTCTGTTCC 125
Query 116 GGTGGAAGTCGGAAGGAGCTCCGGGATAAAGAAAATATGGGTAAGA--G-TGATACACAA 172
||||||||||||||||||||||| |||||||||| || | |||||| | |||||||||
Sbjct 126 GGTGGAAGTCGGAAGGAGCTCCGAGATAAAGAAATTACGAGTAAGAGTGATGATACACAG 185
Query 173 GCGAGTTATGTTTTAGGATCTAAATTTGTGGACCCGAGACGTGTTCTTCAGCTTTCATGG 232
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 186 GCGAGTTATGTTTTAGGATCTAAATTTGTGGACCCGACACGTGTTCTTCAACTTTCATGG 245
Query 233 CAACCAAGGGTCTTCCTTTACCGCGGGTTCTTGTCGGAGGAAGAGTCTGATCATCTGACA 292
| |||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |
Sbjct 246 CTACCAAGGGTCTTTCTATACCGCGGGTTCTTGTCGGAGGAAGAGTGTGATCATCTGATA 305
Query 293 TCTCTGAGAAAGGATATTTCAGAGG-TAACCTCAGGGGATGCTGATGGAAAGGCGCAACT 351
|||||||||||||| | | |||||| | | ||||| |||||||||||||||| |||||||
Sbjct 306 TCTCTGAGAAAGGAGACTACAGAGGTTTA-CTCAGTGGATGCTGATGGAAAGACGCAACT 364
Query 352 TGATCCAGTAGTTGCTGGGATTGAAGAAAAAATATCTGCGTGGACTTTCCTCCCAAGAGA 411
||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 365 TGATCCAGTAGTTGCTGGGATTGAAGAAAAAGTTTCTGCGTGGACTTTCCTCCCAGGAGA 424
Query 412 AAATGGTGGCTCTATCAAGGTAAGAAGTTACACTTCTGAGAAGTCAGGAAAGAAGTTGGA 471
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 AAATGGCGGCTCTATCAAGGTAAGAAGTTACACTTCTGAGAAGTCAGGAAAGAAGTTGGA 484
Query 472 TTATTTTGGAGAGGAACCTAGCTCTGTATCGCATGAATCTTTGCTGGCAACCGTCGTTCT 531
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 485 TTATTTTGGAGAGGAACCTAGCTCCGTATTGCATGAATCTTTGCTGGCAACCGTCGTTCT 544
Query 532 CTACCTCTCAAACACAACTCAAGGAGGAGAACTTCTCTTCCCAAATTCAGAGGTGAAACC 591
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 545 CTACCTCTCAAACACAACTCAAGGAGGAGAGCTTCTCTTCCCAAATTCAGAGATGAAACC 604
Query 592 CAAAAAGAGTTGCTCAGAGGGCGGTAACATTTTAAGACCAGTGAAAGGAAACGCAGTTCT 651
|||||| ||||||| |||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 605 CAAAAACAGTTGCTTGGAGGGCGGTAACATTTTAAGACCAGTAAAAGGAAACGCAATTCT 664
Query 652 GTTCTTCAGCAGACACTTGAATGCATCTTTGGATGAGACAAGCACTCATTTGAGATGCCC 711
|||||||| ||| | |||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 665 GTTCTTCACCAGGCTCTTGAATGCATCTTTGGATGGGAAAAGCACTCATTTGAGGTGCCC 724
Query 712 TGTGGTAAAAGGAGAACTGTTAGTGGCAACAAAACTGATCTATGCGAAGAAACAAGCAAG 771
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TGTGGTGAAAGGAGAACTGTTAGTGGCAACAAAACTGATCTATGCGAAGAAACAAGCAAG 784
Query 772 AAATGAGGAGAGTGGGGAATGCGGTGATGAAGATGAAAACTGTGAACGATGGGCTAACCT 831
|| ||||||||||||||||||| |||||||||| |||||||||| |||||||||||| ||
Sbjct 785 AATTGAGGAGAGTGGGGAATGCAGTGATGAAGACGAAAACTGTGGACGATGGGCTAAGCT 844
Query 832 TGGTGAGTGCAAGAAAAACCCTGTCTATATGATTGGCTCTCCTGATTACTACGGTACCTG 891
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 TGGGGAGTGCAAGAAAAACCCTGTCTATATGATTGGCTCTCCTGATTACTACGGTACCTG 904
Query 892 CAGAAAAAGTTGTAACGCTTGTTGATTCTTCAATCTTA--G----T----GCA-A----- 935
|||||| ||||||||||||||||||||||||||||||| | | | | |
Sbjct 905 CAGAAAGAGTTGTAACGCTTGTTGATTCTTCAATCTTATCGCAAATAATTGAACATTTTC 964
Query 936 ATACT----TA----AGCTGTTTTTGGTCTATATGATAGAATAAA-ATGTGAATAGTT-- 984
||||| || |||||||||||||||||| ||||||||||| | ||||||||||
Sbjct 965 ATACTCAAGTACTTGAGCTGTTTTTGGTCTATAAGATAGAATAAATA-GTGAATAGTTAA 1023
Query 985 G--TCTTTGTGGTAATTGATTCCTTATTGACCATAGGATAAAGGAATATACTCACTTAGA 1042
| || | ||||||||| |||||| ||| |||||||| ||| |||||||||||||||||
Sbjct 1024 GGGTCGTGGTGGTAATTAATTCCTC-TTGGCCATAGGAGAAAAGAATATACTCACTTAGA 1082
Query 1043 TCTTCTTTGATATAACTAGAAGTCTTTTTCTATGTT---ATCTATGTTTCTCT--AATCA 1097
||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 1083 TCTTCTTTGATATAACTAGAAGTCTTTGTCTATGTTGTTATCTATGTTTCTCTCGAATCA 1142
Query 1098 TAAATTTGCATCTT 1111
||||||||||||||
Sbjct 1143 TAAATTTGCATCTT 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54467591325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5