BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492268
Length=655
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25590.1 | Symbols: ADF7 | actin depolymerizing factor 7 | c... 974 0.0
> AT4G25590.1 | Symbols: ADF7 | actin depolymerizing factor 7 |
chr4:13058936-13060107 REVERSE LENGTH=672
Length=672
Score = 974 bits (527), Expect = 0.0
Identities = 626/671 (93%), Gaps = 18/671 (3%)
Strand=Plus/Plus
Query 1 AACAACAAATCTTGCCATCTTCCTCAAGTCTTATCATAGAAACTAGACAAAAGCCATGGC 60
||||||||||||| | ||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 3 AACAACAAATCTTTCGATCTTCCTCAAGTCTTATCATAGAACCTAGACAAAAGCAATGGC 62
Query 61 TAACGCGGCGTCGGGGATGGCTGTGGAGGACGAATGCAAGCTGAAGTTTTTGGAGCTAAA 120
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 63 GAACGCGGCGTCGGGGATGGCAGTGGAGGACGAGTGCAAGCTGAAGTTTTTGGAGCTCAA 122
Query 121 GTCGAAAAGAAACTATCGATTCATAATATTCAGGATAGACGGGCAACAAGTGGTGGTCGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GTCGAAAAGAAACTATCGATTCATAATATTCAGGATAGACGGGCAACAAGTGGTGGTCGA 182
Query 181 AAAGTTAGGAAACCCGGAAGAGACTTACGGA-GATTTCACAGCCTCCCTCCCTGCGAACG 239
||||||||||||||| || ||||||||| || |||||||| |||||||||||||||||||
Sbjct 183 AAAGTTAGGAAACCCCGATGAGACTTAC-GATGATTTCACCGCCTCCCTCCCTGCGAACG 241
Query 240 AGTGCCGCTATGCAGTCTTCGATTTTGACTTCATCACCGATGAAAATTGCCAGAAGAGCA 299
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 242 AGTGCCGCTATGCAGTCTTCGACTTTGACTTCATCACCGATGAAAATTGCCAGAAGAGCA 301
Query 300 AAATCTTCTTCATCGCATGGTCACCAGATTCATCAAGGGTGAGGATGAAGATGGTGTATG 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 AAATCTTCTTCATTGCATGGTCACCAGATTCATCAAGGGTGAGGATGAAGATGGTGTATG 361
Query 360 CAAGCTCTAAGGATAGATTCAAGAGAGAATTGGATGGCATTCAGGTGGAGTTACAAGCCA 419
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 362 CAAGCTCTAAGGATAGATTTAAGAGAGAATTGGACGGCATTCAGGTGGAGTTACAAGCCA 421
Query 420 CTGATCCTAGCGAGATGAGCTTCGACATTATCAAAAGCCGAGCTCTCTAGATCATTTTCA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 422 CTGATCCTAGCGAGATGAGCTTCGACATTATCAAAAGCCGAGCTCTCTAGATCCTTTTCA 481
Query 480 ACGATCTATATCTCTATCATCGATCCTGATCTTCACCCCAAAAAATTACCATGTTAT-T- 537
|||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
Sbjct 482 ACGATCTATATCTCTATCATCGATCCTGATCTTCACAA-AAAAAATTACCATGTCATCTG 540
Query 538 -T-G------G--TT-TT-ATCTGTCTTATTCATTTTATAAAAATTCTTTTCTATCCACT 585
| | | || || ||||||||||||||||||||||| |||||||||| || |||
Sbjct 541 GTTGAAAACTGAATTCTTTATCTGTCTTATTCATTTTATAAACATTCTTTTCTTTCTACT 600
Query 586 TCCGTTTGGAAGGGAGGTTGAAACCATGTAGCTT-GTTGTGTAACTCTCAAATAAACGAA 644
||||||||| || || ||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 601 TCCGTTTGGGAGAGAAGTTCAAACCTTGTAGCTTTGTTGTGTAACTCTCAAATAAACGAA 660
Query 645 TAATATTTCCT 655
|||||||||||
Sbjct 661 TAATATTTCCT 671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31647512610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5