BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492269
Length=2012
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25580.1 | Symbols: | CAP160 protein | chr4:13056184-130588... 1308 0.0
AT5G52300.1 | Symbols: RD29B, LTI65 | CAP160 protein | chr5:212... 52.8 1e-05
AT5G52310.1 | Symbols: COR78, LTI78, RD29A, LTI140 | low-temper... 52.8 1e-05
> AT4G25580.1 | Symbols: | CAP160 protein | chr4:13056184-13058802
FORWARD LENGTH=2162
Length=2162
Score = 1308 bits (708), Expect = 0.0
Identities = 896/984 (91%), Gaps = 23/984 (2%)
Strand=Plus/Plus
Query 985 GGGAGAAAAGTCGTGGTTTTGATACTAAATCAAGACCTGAAATGGGCAAGCACTTACCGG 1044
|||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1065 GGGAGAAAAGTCATGGTTTTGATACTAAGTCAAGACCTGAAATGGGCAAGCACATACCGG 1124
Query 1045 CGGGAGACTATGGATCTAGTTTGGGAAAAGAATCTCCGGAGAGGAGTCAAGAATTTGATT 1104
||||||||||||||||||| ||||| ||||||||||||||| ||||| | |||||||||
Sbjct 1125 CGGGAGACTATGGATCTAGATTGGGGAAAGAATCTCCGGAGCGGAGTGATGAATTTGATC 1184
Query 1105 TGGGAAAAGATTTGCTAACGAGAACTCAAGGTATACAAAAGCCTGC-TGGTTTTGATTCG 1163
||||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||
Sbjct 1185 TGGGAAAAGATTTGCCGACGAGAACTCAAGGTATACAAAACCCT-CAGGGTTTTGATTCC 1243
Query 1164 AAAGGTCAGGA-GAGAGGAGATGAAATGCAGCAGCCGAATCAGAGCAGCTACACTGATAA 1222
| |||||| || ||||||||| || ||||| ||||| ||||||||||||||||| |||||
Sbjct 1244 AGAGGTCA-GAGGAGAGGAGAGGAGATGCACCAGCCTAATCAGAGCAGCTACACCGATAA 1302
Query 1223 GATCGCATTAGCGACTTCGGTCGTAGCTGACAAAGCTGTGGCAGCGAAGAACGCCGTCGC 1282
|||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 1303 GATCTCATTAGCGACTTCGGTCGTAGCAGACAAAGCTGTGGCGGCGAAAAACGCCGTCGC 1362
Query 1283 TTCGAAGCTCGGTTACTCTGGGGAAGCCGGCCACGAGAATCGTGTAGAAGGAGCAGAAAC 1342
||||||| | |||||||| ||||||| |||||||||||||||||| |||||||||||||
Sbjct 1363 TTCGAAGTTAGGTTACTCCGGGGAAGGCGGCCACGAGAATCGTGTGGAAGGAGCAGAAAA 1422
Query 1343 TCCTAGCTCCGCTGGTGGATACGGGAGTACGGTCGCAGGTATGGTGACTCCAGTTTATGA 1402
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||
Sbjct 1423 TCCTAGCTCCGCTGGTGGATACGGAAGTACGGTCGCAAGTATGGTGACTCCAGTTTACGA 1482
Query 1403 GAAGGTTAAAGAAACAGGAGCTAGTGTAATGACGAAATTGCCATTCTCCGGGACAGGGAC 1462
|||||||||||| ||||||||||||||||||||||| || |||||| ||||||| |||||
Sbjct 1483 GAAGGTTAAAGAGACAGGAGCTAGTGTAATGACGAAGTTACCATTCACCGGGACCGGGAC 1542
Query 1463 AGAGCAAGGACAAGACAAGGGCGTCTCTGCTAAAGAATAT-CTTACGGAGAAACTGAGTC 1521
||||||||||||||||| ||||||||| || ||||||| | |||||||||||||||||||
Sbjct 1543 AGAGCAAGGACAAGACAGGGGCGTCTCGGCGAAAGAAT-TCCTTACGGAGAAACTGAGTC 1601
Query 1522 CGGGAGAGGAAGACAAGGCTTTGTCGGAAGTGGTCGCTGAGAAGCTTCATCTTGGAGGAG 1581
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1602 CGGGAGAGGAAGACAAGGCTTTGTCGGAAGTGGTCACTGAGAAGCTTCATCTTGGAGGAG 1661
Query 1582 GCGGTGGCGA----GC-C----GAAGA-AGGGGATAGTGACACAATCGGAGGAGGTGGAG 1631
|||||||||| || | ||||| |||| |||||||||||||||||||||||||||
Sbjct 1662 GCGGTGGCGAAACTGCGCCACCGAAGAGAGGG-ATAGTGACACAATCGGAGGAGGTGGAG 1720
Query 1632 AAAAGGCTAGGACGGTTTAAGGATCCGAGCTCGGAAGCAGCTACAAAACACGGTGAAG-A 1690
|||||| ||||| ||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 1721 AAAAGGTTAGGAGGGTTTAAGGATCCGAGCTCGGAAGCAGCTACGAAACAGGGTGAAGCA 1780
Query 1691 GTATGCGGAGGAAGGCGAAGGAGGGATGGCGGAGAAGCTGAGAGGAGCTGTTACTTCGTG 1750
||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1781 -TATGCGGAGAAAGGCGAAGGAGGGATTGCGGAGAAGCTGAGAGGAGCTGTTACTTCTTG 1839
Query 1751 GCTTGCTGGTACGACGGAAGAAGTAACGCAAAAGTCTACAGAATCTGTTCAAGACTCTAC 1810
| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1840 GATCGCTGGTACGACGGAAGAAGTGACGCAAAAGTCTACAGAATCTGTTCAAGACTCTAC 1899
Query 1811 ACAGTCACTTGGCTCCACCGTTGGGAATAAAATGGGAATTTCTGGTTCGGGAGGAGATGA 1870
||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||
Sbjct 1900 ACAGTCACTTGGCTCCACCATTGGGAATAAAATGGGAATTACGGGTTCGGGAGGAGGTGA 1959
Query 1871 AGCAGGC-AATGGTGGTTCTGTGCCTTTGCAGAGGAGATTTCAAGAATCTGGAAAGTGAG 1929
|||||| || |||||| |||||||||| | ||||||||||||||||||||| ||||
Sbjct 1960 GGCAGGCCAACAA-GGTTCTATGCCTTTGCAAAAGAGATTTCAAGAATCTGGAAACTGAG 2018
Query 1930 CTT-TGCTTCTTCTTTTTAA-TGT 1951
|| |||||||||||||||| |||
Sbjct 2019 ATTCTGCTTCTTCTTTTTAAATGT 2042
Score = 1074 bits (581), Expect = 0.0
Identities = 773/866 (89%), Gaps = 12/866 (1%)
Strand=Plus/Plus
Query 1 GTTCGGCTATGCGTCTTCCTCCTCTTTCTC-TACTCTTTAACTCTGTATAAAGCTTTCAA 59
|||||||||||||||||||||||||||| | |||||| | |||||||||||| |||| ||
Sbjct 1 GTTCGGCTATGCGTCTTCCTCCTCTTTCCCATACTCTCTGACTCTGTATAAAACTTTGAA 60
Query 60 GAAGCTCCTCGGATTTACTCAG-AACAATTT-GATTGCAGAGAAAGGAAAAGAGCAAAAC 117
|||||||||| |||| ||||| |||||||| || |||| ||||||||||||| |||||
Sbjct 61 GAAGCTCCTCATATTTTCTCAGAAACAATTTGGA-TGCATAGAAAGGAAAAGAACAAAAT 119
Query 118 CAAAGT-TAGCAAATATTATGGATTCGCAAGCGCAGTTGCAACGTCCTCATGGTCATCAC 176
|||| | ||||||||| |||||||| |||||||||||||||||| ||||||||||||||
Sbjct 120 CAAA-TCTAGCAAATAAAATGGATTCACAAGCGCAGTTGCAACGTACTCATGGTCATCAC 178
Query 177 CAAGCAGAGGAACCAATTAGGATTCACCATCCAGAGGAAGAAGGGCATCATGAGAAAGGA 236
|||||| |||| ||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 179 CAAGCACAGGAGCCAATAAGGATTCACCATCCAGAGGAAGAAGGGCATCATGAAAAAGGA 238
Query 237 CCATCAAAAGTTCTGAAGAAAGTGAAGGAAAAAGCAAAGAAGATCAAGAACGTTCTTACT 296
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 239 CCATCAAAAGTTCTGAAGAAAGTGAAGGAAAAAGCAAAGAAGATCAAGAATGTTCTTACT 298
Query 297 AAACATGGACATGGTCATGAGCACGGTCGTGGAGAACACATCCCCGATGATCACGATCTC 356
||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||
Sbjct 299 AAACATGGACATGGTCATGAGCACGATCGTGGAGAACACATCCCTGACGATCACGATCTA 358
Query 357 GACCAAGAAGACGATGAAGATGACTACCAAGGCCAAC-AACTCCACGGGGGTGCACCAGC 415
||||||||||||||||||||||||||| || | |||| |||||||||| |||||||||||
Sbjct 359 GACCAAGAAGACGATGAAGATGACTAC-AACGACAACCAACTCCACGGCGGTGCACCAGC 417
Query 416 ACGAGGAAAAGCTCACAATCCGGTGAAGGAAGAAATAGTCCCTCCAGGCA-CGAAAGCAT 474
||||||||||||||| | |||||||||||| || |||||||||||||| | ||||||| |
Sbjct 418 ACGAGGAAAAGCTCATATTCCGGTGAAGGAGGAGATAGTCCCTCCAGG-ATCGAAAGCTT 476
Query 475 TTCCGGTTGTGTCTTCTTCACATACGAAACACTCTGAGCCAATCAGAGGAGTTGGCCAGG 534
|||| ||||| || ||||||||||| |||| |||||||||| | |||||||||||||| |
Sbjct 477 TTCCAGTTGTTTCCTCTTCACATACAAAACCCTCTGAGCCAGTGAGAGGAGTTGGCCACG 536
Query 535 AAGCAGTTTCTCATCCTGTTAGACCCTCCGGTGTTCCTGATAAAGAAGAAAGAAGAGGGG 594
||||| | |||| |||| | | || ||||||||| || || |||||||| ||||||||||
Sbjct 537 AAGCAATGTCTCGTCCTATAAAACACTCCGGTGTACCGGAGAAAGAAGAGAGAAGAGGGG 596
Query 595 CTGCTACATTGACACCACATAACACCCCCGTGTCATTACTCTCTGCGACCGAAGATGTCA 654
|| ||||| |||| || |||||||| |||||||| ||||| ||||| || |||||||| |
Sbjct 597 CTCCTACACTGACGCCGCATAACACTCCCGTGTCTTTACTATCTGCAACAGAAGATGTGA 656
Query 655 CGAGAACATTTGTTCCTGGTGAAGACAAGTCTAGAGACCAACGTAAGGTCAATATGGAGA 714
| |||||||||||||||| |||| |||||||| || ||||| |||| || ||||| || |
Sbjct 657 CAAGAACATTTGTTCCTGATGAACACAAGTCTCGAAACCAAAGTAAAGTTAATATCGACA 716
Query 715 GACCCAGAGGATTGGAGCAAGATCCAGCTGCTCCGGGATCTCATGGTCAGGT-GTCAAAT 773
|||||| ||||||||| |||||||||||||||||||||||||||||| ||| |||||||
Sbjct 717 GACCCAAAGGATTGGACCAAGATCCAGCTGCTCCGGGATCTCATGGTG-GGTTGTCAAAT 775
Query 774 GACCAGTCCAAAGTTACTGATCCCATCGGAAAATCTACTGGAAAAATTGGAGCAGCAACG 833
| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 776 TATCAGTCCAAAGTTACTGACCCCATCGGAAAATCTACTGGAGAAATTGGAGCAGCATCG 835
Query 834 ACTGTCTCAGCTCTTGGAAGATTAGG 859
|||||||||||| ||||||| |||||
Sbjct 836 ACTGTCTCAGCTATTGGAAGGTTAGG 861
> AT5G52300.1 | Symbols: RD29B, LTI65 | CAP160 protein | chr5:21237056-21239529
FORWARD LENGTH=2134
Length=2134
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 906 TCTAATTATCAGTCCAAAGTTACTGATC 933
||||||||||||||||||||||||||||
Sbjct 888 TCTAATTATCAGTCCAAAGTTACTGATC 915
> AT5G52310.1 | Symbols: COR78, LTI78, RD29A, LTI140 | low-temperature-responsive
protein 78 (LTI78) / desiccation-responsive
protein 29A (RD29A) | chr5:21240849-21243613 FORWARD LENGTH=2500
Length=2500
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 906 TCTAATTATCAGTCCAAAGTTACTGATC 933
||||||||||||||||||||||||||||
Sbjct 747 TCTAATTATCAGTCCAAAGTTACTGATC 774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99698282370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5