BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg492269 Length=2012 Score E Sequences producing significant alignments: (Bits) Value AT4G25580.1 | Symbols: | CAP160 protein | chr4:13056184-130588... 1308 0.0 AT5G52300.1 | Symbols: RD29B, LTI65 | CAP160 protein | chr5:212... 52.8 1e-05 AT5G52310.1 | Symbols: COR78, LTI78, RD29A, LTI140 | low-temper... 52.8 1e-05 > AT4G25580.1 | Symbols: | CAP160 protein | chr4:13056184-13058802 FORWARD LENGTH=2162 Length=2162 Score = 1308 bits (708), Expect = 0.0 Identities = 896/984 (91%), Gaps = 23/984 (2%) Strand=Plus/Plus Query 985 GGGAGAAAAGTCGTGGTTTTGATACTAAATCAAGACCTGAAATGGGCAAGCACTTACCGG 1044 |||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 1065 GGGAGAAAAGTCATGGTTTTGATACTAAGTCAAGACCTGAAATGGGCAAGCACATACCGG 1124 Query 1045 CGGGAGACTATGGATCTAGTTTGGGAAAAGAATCTCCGGAGAGGAGTCAAGAATTTGATT 1104 ||||||||||||||||||| ||||| ||||||||||||||| ||||| | ||||||||| Sbjct 1125 CGGGAGACTATGGATCTAGATTGGGGAAAGAATCTCCGGAGCGGAGTGATGAATTTGATC 1184 Query 1105 TGGGAAAAGATTTGCTAACGAGAACTCAAGGTATACAAAAGCCTGC-TGGTTTTGATTCG 1163 ||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||| Sbjct 1185 TGGGAAAAGATTTGCCGACGAGAACTCAAGGTATACAAAACCCT-CAGGGTTTTGATTCC 1243 Query 1164 AAAGGTCAGGA-GAGAGGAGATGAAATGCAGCAGCCGAATCAGAGCAGCTACACTGATAA 1222 | |||||| || ||||||||| || ||||| ||||| ||||||||||||||||| ||||| Sbjct 1244 AGAGGTCA-GAGGAGAGGAGAGGAGATGCACCAGCCTAATCAGAGCAGCTACACCGATAA 1302 Query 1223 GATCGCATTAGCGACTTCGGTCGTAGCTGACAAAGCTGTGGCAGCGAAGAACGCCGTCGC 1282 |||| |||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| Sbjct 1303 GATCTCATTAGCGACTTCGGTCGTAGCAGACAAAGCTGTGGCGGCGAAAAACGCCGTCGC 1362 Query 1283 TTCGAAGCTCGGTTACTCTGGGGAAGCCGGCCACGAGAATCGTGTAGAAGGAGCAGAAAC 1342 ||||||| | |||||||| ||||||| |||||||||||||||||| ||||||||||||| Sbjct 1363 TTCGAAGTTAGGTTACTCCGGGGAAGGCGGCCACGAGAATCGTGTGGAAGGAGCAGAAAA 1422 Query 1343 TCCTAGCTCCGCTGGTGGATACGGGAGTACGGTCGCAGGTATGGTGACTCCAGTTTATGA 1402 |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| || Sbjct 1423 TCCTAGCTCCGCTGGTGGATACGGAAGTACGGTCGCAAGTATGGTGACTCCAGTTTACGA 1482 Query 1403 GAAGGTTAAAGAAACAGGAGCTAGTGTAATGACGAAATTGCCATTCTCCGGGACAGGGAC 1462 |||||||||||| ||||||||||||||||||||||| || |||||| ||||||| ||||| Sbjct 1483 GAAGGTTAAAGAGACAGGAGCTAGTGTAATGACGAAGTTACCATTCACCGGGACCGGGAC 1542 Query 1463 AGAGCAAGGACAAGACAAGGGCGTCTCTGCTAAAGAATAT-CTTACGGAGAAACTGAGTC 1521 ||||||||||||||||| ||||||||| || ||||||| | ||||||||||||||||||| Sbjct 1543 AGAGCAAGGACAAGACAGGGGCGTCTCGGCGAAAGAAT-TCCTTACGGAGAAACTGAGTC 1601 Query 1522 CGGGAGAGGAAGACAAGGCTTTGTCGGAAGTGGTCGCTGAGAAGCTTCATCTTGGAGGAG 1581 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1602 CGGGAGAGGAAGACAAGGCTTTGTCGGAAGTGGTCACTGAGAAGCTTCATCTTGGAGGAG 1661 Query 1582 GCGGTGGCGA----GC-C----GAAGA-AGGGGATAGTGACACAATCGGAGGAGGTGGAG 1631 |||||||||| || | ||||| |||| ||||||||||||||||||||||||||| Sbjct 1662 GCGGTGGCGAAACTGCGCCACCGAAGAGAGGG-ATAGTGACACAATCGGAGGAGGTGGAG 1720 Query 1632 AAAAGGCTAGGACGGTTTAAGGATCCGAGCTCGGAAGCAGCTACAAAACACGGTGAAG-A 1690 |||||| ||||| ||||||||||||||||||||||||||||||| ||||| ||||||| | Sbjct 1721 AAAAGGTTAGGAGGGTTTAAGGATCCGAGCTCGGAAGCAGCTACGAAACAGGGTGAAGCA 1780 Query 1691 GTATGCGGAGGAAGGCGAAGGAGGGATGGCGGAGAAGCTGAGAGGAGCTGTTACTTCGTG 1750 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 1781 -TATGCGGAGAAAGGCGAAGGAGGGATTGCGGAGAAGCTGAGAGGAGCTGTTACTTCTTG 1839 Query 1751 GCTTGCTGGTACGACGGAAGAAGTAACGCAAAAGTCTACAGAATCTGTTCAAGACTCTAC 1810 | | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1840 GATCGCTGGTACGACGGAAGAAGTGACGCAAAAGTCTACAGAATCTGTTCAAGACTCTAC 1899 Query 1811 ACAGTCACTTGGCTCCACCGTTGGGAATAAAATGGGAATTTCTGGTTCGGGAGGAGATGA 1870 ||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| ||| Sbjct 1900 ACAGTCACTTGGCTCCACCATTGGGAATAAAATGGGAATTACGGGTTCGGGAGGAGGTGA 1959 Query 1871 AGCAGGC-AATGGTGGTTCTGTGCCTTTGCAGAGGAGATTTCAAGAATCTGGAAAGTGAG 1929 |||||| || |||||| |||||||||| | ||||||||||||||||||||| |||| Sbjct 1960 GGCAGGCCAACAA-GGTTCTATGCCTTTGCAAAAGAGATTTCAAGAATCTGGAAACTGAG 2018 Query 1930 CTT-TGCTTCTTCTTTTTAA-TGT 1951 || |||||||||||||||| ||| Sbjct 2019 ATTCTGCTTCTTCTTTTTAAATGT 2042 Score = 1074 bits (581), Expect = 0.0 Identities = 773/866 (89%), Gaps = 12/866 (1%) Strand=Plus/Plus Query 1 GTTCGGCTATGCGTCTTCCTCCTCTTTCTC-TACTCTTTAACTCTGTATAAAGCTTTCAA 59 |||||||||||||||||||||||||||| | |||||| | |||||||||||| |||| || Sbjct 1 GTTCGGCTATGCGTCTTCCTCCTCTTTCCCATACTCTCTGACTCTGTATAAAACTTTGAA 60 Query 60 GAAGCTCCTCGGATTTACTCAG-AACAATTT-GATTGCAGAGAAAGGAAAAGAGCAAAAC 117 |||||||||| |||| ||||| |||||||| || |||| ||||||||||||| ||||| Sbjct 61 GAAGCTCCTCATATTTTCTCAGAAACAATTTGGA-TGCATAGAAAGGAAAAGAACAAAAT 119 Query 118 CAAAGT-TAGCAAATATTATGGATTCGCAAGCGCAGTTGCAACGTCCTCATGGTCATCAC 176 |||| | ||||||||| |||||||| |||||||||||||||||| |||||||||||||| Sbjct 120 CAAA-TCTAGCAAATAAAATGGATTCACAAGCGCAGTTGCAACGTACTCATGGTCATCAC 178 Query 177 CAAGCAGAGGAACCAATTAGGATTCACCATCCAGAGGAAGAAGGGCATCATGAGAAAGGA 236 |||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 179 CAAGCACAGGAGCCAATAAGGATTCACCATCCAGAGGAAGAAGGGCATCATGAAAAAGGA 238 Query 237 CCATCAAAAGTTCTGAAGAAAGTGAAGGAAAAAGCAAAGAAGATCAAGAACGTTCTTACT 296 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 239 CCATCAAAAGTTCTGAAGAAAGTGAAGGAAAAAGCAAAGAAGATCAAGAATGTTCTTACT 298 Query 297 AAACATGGACATGGTCATGAGCACGGTCGTGGAGAACACATCCCCGATGATCACGATCTC 356 ||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||| Sbjct 299 AAACATGGACATGGTCATGAGCACGATCGTGGAGAACACATCCCTGACGATCACGATCTA 358 Query 357 GACCAAGAAGACGATGAAGATGACTACCAAGGCCAAC-AACTCCACGGGGGTGCACCAGC 415 ||||||||||||||||||||||||||| || | |||| |||||||||| ||||||||||| Sbjct 359 GACCAAGAAGACGATGAAGATGACTAC-AACGACAACCAACTCCACGGCGGTGCACCAGC 417 Query 416 ACGAGGAAAAGCTCACAATCCGGTGAAGGAAGAAATAGTCCCTCCAGGCA-CGAAAGCAT 474 ||||||||||||||| | |||||||||||| || |||||||||||||| | ||||||| | Sbjct 418 ACGAGGAAAAGCTCATATTCCGGTGAAGGAGGAGATAGTCCCTCCAGG-ATCGAAAGCTT 476 Query 475 TTCCGGTTGTGTCTTCTTCACATACGAAACACTCTGAGCCAATCAGAGGAGTTGGCCAGG 534 |||| ||||| || ||||||||||| |||| |||||||||| | |||||||||||||| | Sbjct 477 TTCCAGTTGTTTCCTCTTCACATACAAAACCCTCTGAGCCAGTGAGAGGAGTTGGCCACG 536 Query 535 AAGCAGTTTCTCATCCTGTTAGACCCTCCGGTGTTCCTGATAAAGAAGAAAGAAGAGGGG 594 ||||| | |||| |||| | | || ||||||||| || || |||||||| |||||||||| Sbjct 537 AAGCAATGTCTCGTCCTATAAAACACTCCGGTGTACCGGAGAAAGAAGAGAGAAGAGGGG 596 Query 595 CTGCTACATTGACACCACATAACACCCCCGTGTCATTACTCTCTGCGACCGAAGATGTCA 654 || ||||| |||| || |||||||| |||||||| ||||| ||||| || |||||||| | Sbjct 597 CTCCTACACTGACGCCGCATAACACTCCCGTGTCTTTACTATCTGCAACAGAAGATGTGA 656 Query 655 CGAGAACATTTGTTCCTGGTGAAGACAAGTCTAGAGACCAACGTAAGGTCAATATGGAGA 714 | |||||||||||||||| |||| |||||||| || ||||| |||| || ||||| || | Sbjct 657 CAAGAACATTTGTTCCTGATGAACACAAGTCTCGAAACCAAAGTAAAGTTAATATCGACA 716 Query 715 GACCCAGAGGATTGGAGCAAGATCCAGCTGCTCCGGGATCTCATGGTCAGGT-GTCAAAT 773 |||||| ||||||||| |||||||||||||||||||||||||||||| ||| ||||||| Sbjct 717 GACCCAAAGGATTGGACCAAGATCCAGCTGCTCCGGGATCTCATGGTG-GGTTGTCAAAT 775 Query 774 GACCAGTCCAAAGTTACTGATCCCATCGGAAAATCTACTGGAAAAATTGGAGCAGCAACG 833 | ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| || Sbjct 776 TATCAGTCCAAAGTTACTGACCCCATCGGAAAATCTACTGGAGAAATTGGAGCAGCATCG 835 Query 834 ACTGTCTCAGCTCTTGGAAGATTAGG 859 |||||||||||| ||||||| ||||| Sbjct 836 ACTGTCTCAGCTATTGGAAGGTTAGG 861 > AT5G52300.1 | Symbols: RD29B, LTI65 | CAP160 protein | chr5:21237056-21239529 FORWARD LENGTH=2134 Length=2134 Score = 52.8 bits (28), Expect = 1e-05 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 906 TCTAATTATCAGTCCAAAGTTACTGATC 933 |||||||||||||||||||||||||||| Sbjct 888 TCTAATTATCAGTCCAAAGTTACTGATC 915 > AT5G52310.1 | Symbols: COR78, LTI78, RD29A, LTI140 | low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) | chr5:21240849-21243613 FORWARD LENGTH=2500 Length=2500 Score = 52.8 bits (28), Expect = 1e-05 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 906 TCTAATTATCAGTCCAAAGTTACTGATC 933 |||||||||||||||||||||||||||| Sbjct 747 TCTAATTATCAGTCCAAAGTTACTGATC 774 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99698282370 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5