BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492272
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25550.1 | Symbols: | Cleavage/polyadenylation specificity ... 1386 0.0
> AT4G25550.1 | Symbols: | Cleavage/polyadenylation specificity
factor, 25kDa subunit | chr4:13048377-13051169 FORWARD LENGTH=1041
Length=1041
Score = 1386 bits (750), Expect = 0.0
Identities = 944/1031 (92%), Gaps = 39/1031 (4%)
Strand=Plus/Plus
Query 1 TAATTCTCCGTCGAGATTACTTCTCTCCTCCGTTGCCGT-CGAACGCCGCCGCTGAGCGA 59
||||||||||||||||| ||||||||| |||||||||| || | || |||||||| ||
Sbjct 6 TAATTCTCCGTCGAGATCGCTTCTCTCC-CCGTTGCCGTCCG-TCCCCACCGCTGAGTGA 63
Query 60 TAGATCGAAACAGAGAGACACACACGGGGGAAGAAGATTTCA-C---------C------ 103
|||||||||||||||| |||||||| || ||||||||||||| | |
Sbjct 64 TAGATCGAAACAGAGAAACACACAC-GGCGAAGAAGATTTCACCATATTTTGTCTAAGTG 122
Query 104 -ATT-T-TT--GAGAGAGAGATGGCTATGTCTCAGGTGGTGAACACGTACCCGCTTTCCA 158
||| | || ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 123 GATTCTGTTGAGAGAGAGAGATGGCTATGTCTCAGGTGGTGAACACGTACCCGCTTTCGA 182
Query 159 ACTACAGCTTCGGAACTAAGGAACCCAAGCTGGAAAAGGACACCTCCGTCGCCGACCGGC 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 ACTACAGCTTCGGAACTAAGGAACCCAAGCTGGAAAAGGACACCTCCGTCGCCGACCGGC 242
Query 219 TCGCTCGTATGAAAATCAACTATATGAAAGAGGGCATGAGGACTAGCGTTGAAGGGATTC 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TCGCTCGTATGAAAATCAACTATATGAAAGAGGGCATGAGGACTAGCGTTGAAGGGATTC 302
Query 279 TACTGGTGCAAGAACACAACCATCCTCATATACTTCTGCTGCAAATTGGTAACACATTCT 338
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 303 TACTGGTGCAAGAACACAACCATCCTCATATACTTCTGCTACAAATTGGTAACACATTCT 362
Query 339 GCAAACTTCCAGGTGGACGCCTGAAGCCTGGAGAAAATGAAGTTGATGGTCTGAAAAGAA 398
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 363 GCAAACTTCCAGGTGGACGCCTGAAGCCTGGTGAAAATGAAGCTGATGGTCTGAAAAGAA 422
Query 399 AGTTGACCAGTAAGCTTGGAGGCAATTCGGCTGCTCTTGTACCTGACTGGAAGGTAGGAG 458
|| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 423 AGCTGACCAGTAAACTTGGAGGCAATTCGGCTGCTCTTGTACCTGACTGGACGGTAGGAG 482
Query 459 AATGTGTTGCGACATGGTGGCGTCCAAACTTTGAAACCATGATGTACCCGTATTGCCCTC 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 AATGTGTTGCGACATGGTGGCGTCCAAACTTTGAAACCATGATGTACCCGTATTGCCCTC 542
Query 519 CTCACATCACAAAACCAAAGGAATGCAAGAGACTCTTCATTGTTCACTTGTCTGAGAAAG 578
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 543 CTCACATCACGAAACCAAAGGAATGCAAGAGACTCTACATTGTTCACTTGTCTGAGAAAG 602
Query 579 AGTACTTTGCTGTGCCCAAAAACTTGAAACTCTTGGCCGTCCCTTTGTTCGAACTCTATG 638
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 603 AGTACTTTGCTGTGCCCAAAAATTTGAAGCTCTTGGCCGTCCCTTTGTTCGAACTCTATG 662
Query 639 ACAATGTTCAGAGATATGGACCGGTTATATCGACCATACCTCAACAGCTATCCAGATTCC 698
||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||
Sbjct 663 ACAATGTTCAGAGATATGGACCGGTTATATCAACCATTCCGCAGCAGCTATCCAGATTCC 722
Query 699 ATTTCAACATGATTAGTTCGTGATT-CTACTCGGTGTGTTCAAGAACAAG-AAGCCTGTC 756
||||||||||||||||||||||||| | |||||||||||||||||||||| || ||| ||
Sbjct 723 ATTTCAACATGATTAGTTCGTGATTTCGACTCGGTGTGTTCAAGAACAAGGAA-CCTATC 781
Query 757 AGGATGGC-AAGTTATTTAGGTACGGTAGAGAGCTGTAGCTACCGGTTTAGAGATGATAT 815
|| |||| |||||| |||||||||||||||||||||||||||||| ||||||||| |
Sbjct 782 AG-ATGGGTAAGTTACTTAGGTACGGTAGAGAGCTGTAGCTACCGGATTAGAGATGGGGT 840
Query 816 TTTCCGATGATGCGTCTTGGttttttctttttGACATTATAGACTTGTTGGCTTTTATGT 875
||||| |||||||| |||| ||||| | | ||||||||||||||||||||||||||
Sbjct 841 TTTCCAATGATGCGAGTTGGGTTTTT-T----G-CATTATAGACTTGTTGGCTTTTATGT 894
Query 876 AGAACCGGTTCA--GTTTCAGCACaaaaaaaaaaGATTGTTGTATCTCATCTCTAAAAGC 933
|||||||||||| || ||||||||||||| ||||||| ||||||||||| | |||||||
Sbjct 895 AGAACCGGTTCAAAGTGTCAGCACAAAAAACAAAGATTATTGTATCTCATTTTTAAAAGC 954
Query 934 AGTCGTCATTGTTTGACCAGCGCCTGTCTAGTCTTAATCGTAAAACATGTGTTTCCTTCA 993
| | ||||||||||||| | ||||||||| ||| || ||||||||||||||||| ||||
Sbjct 955 ATTTGTCATTGTTTGACTAACGCCTGTCTTCTCT-AACCGTAAAACATGTGTTTCATTCA 1013
Query 994 ATGTTGAATGA 1004
|||||||||||
Sbjct 1014 ATGTTGAATGA 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49179229913
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5