BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492278
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25500.1 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40,... 1792 0.0
AT5G52040.2 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RR... 737 0.0
> AT4G25500.1 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40,
At-RS40 | arginine/serine-rich splicing factor 35 | chr4:13024571-13027440
FORWARD LENGTH=1362
Length=1362
Score = 1792 bits (970), Expect = 0.0
Identities = 1132/1208 (94%), Gaps = 20/1208 (2%)
Strand=Plus/Plus
Query 1 CTTGTTCTAGGGCTTCCACGCGACTACGACTGCTAAATCAATCATTCGACAGGAAGCATG 60
||| |||||||||||||||||||||||| |||| || |||||||| ||||||||||||
Sbjct 59 CTTCTTCTAGGGCTTCCACGCGACTACGCCTGC-CAA--AATCATTCTACAGGAAGCATG 115
Query 61 AAGCCAGTCTTCTGTGGGAATTTTGAGTATGATGCACGTGAGGGTGATCTCGAACGCCTT 120
|||||||||||||||||||| |||||||||||||| || || ||||| || ||||| ||
Sbjct 116 AAGCCAGTCTTCTGTGGGAACTTTGAGTATGATGCGCGCGAAGGTGACCTGGAACGACTA 175
Query 121 TTCAGGAAATACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTTGCTTTTGTGTAC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 176 TTCAGGAAATACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTTGCTTTTGTATAC 235
Query 181 ATGGAAGATGAAAGGGATGCTGAAGATGCCATCCGAGCCCTTGACCG-TATTGAATTTGG 239
|||||||||||||||||||| ||||||||||||||||| |||||||| | ||||||||||
Sbjct 236 ATGGAAGATGAAAGGGATGCGGAAGATGCCATCCGAGCACTTGACCGCT-TTGAATTTGG 294
Query 240 GCGTAAGGGACGAAGACTTCGTGTTGAATGGACTAAGAGTGAACGTGGAGGTGATAGAAG 299
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 295 GCGTAAGGGACGCAGACTTCGTGTTGAATGGACAAAGAGTGAACGTGGAGGTGATAAAAG 354
Query 300 ATCTGGTGGCGGTTCAAGGAGATCCTCATCCAGCATGAGACCTTCCAAGACTCTCTTTGT 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 ATCTGGTGGTGGTTCAAGGAGATCCTCATCCAGCATGAGACCTTCCAAGACTCTCTTTGT 414
Query 360 GATTAACTTTGATGCGGATAATACTAGGACCCGGGATCTAGAGAGACACTTTGAGCCGTA 419
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 415 GATTAACTTTGATGCGGATAATACTAGGACCCGGGATCTAGAGAAACACTTTGAGCCGTA 474
Query 420 TGGAAAGATCGTAAACGTTAGGATCAGGAGGAATTTCGCATTTATCCAATATGAGGCACA 479
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 475 TGGAAAGATCGTAAACGTTAGGATCAGGAGGAATTTTGCATTTATCCAGTACGAGGCACA 534
Query 480 AGAGGATGCCACAAGAGCACTGGACGCTACAAATAACAGTAAGCTGATGGATAAGGTGAT 539
|||||||||||| |||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 535 AGAGGATGCCACCAGAGCATTGGATGCTTCAAATAACAGTAAGCTGATGGATAAGGTGAT 594
Query 540 CTCGGTGGAGTATGCGGTGAAGGATGATGATGCTAGAGGGAATGGACACAGTCCTGAAAG 599
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 595 CTCGGTGGAGTATGCTGTGAAGGATGATGATGCTAGAGGAAATGGACACAGTCCTGAAAG 654
Query 600 ACGCCGTGATAGGTCACCTGAAAGGAGAAGGCGGTCACCTAGTCCTTACAAAAGAGAAAG 659
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 655 ACGCCGTGATAGGTCACCTGAAAGGAGAAGGCGATCACCTAGTCCTTACAAAAGAGAAAG 714
Query 660 AGGAAGCCCTGATTATGGCCGAGGTGCTAGTCCTGTTGCTGCCTACAGAAAGGAAAAAAC 719
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 715 AGGAAGCCCTGATTATGGCCGAGGAGCTAGTCCTGTTGCTGCCTACAGAAAGGAAAGGAC 774
Query 720 CAGTCCTGACTATGGTCGAAGACGTAGCCAAAGTCCTTACAAGAAATCAAGGCGTGGCAG 779
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 775 CAGTCCTGACTATGGTCGAAGACGTAGCCCAAGTCCTTACAAGAAATCAAGACGTGGCAG 834
Query 780 CCCCGAGTACGGCCGCGACCGCAGAGGCAATGATAGCCCTCGCAGGAGGGAGAGAGTCGT 839
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TCCCGAGTATGGTCGTGACCGCAGAGGCAATGATAGCCCTCGCAGGAGGGAGAGAGTCGC 894
Query 840 AAGCCCTA--A-GTACAGCCGCAGTCCCAACAACAAGAGAGAGAGGATGAGCCCTAATCA 896
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AAGCCCTACTAAGTACAGCCGCAGTCCCAACAACAAGAGAGAGAGGATGAGCCCTAATCA 954
Query 897 CAGCCCGTTTAAGAAGGAAAGTCCGAGAAATGGGGTTGGTGAAGTTGATAGTCCCAACGA 956
||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| ||
Sbjct 955 CAGCCCGTTCAAGAAGGAGAGTCCGAGAAATGGGGTTGGTGAAGTTGAAAGTCCCATTGA 1014
Query 957 AAGGAGGGAGAGATCAAGGTCTAGCCCGGAGAATGGCCAAGTTGAAAGCCCTGGCTCAAT 1016
|||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1015 AAGGAGAGAGAGATCGAGGTCTAGCCCCGAGAATGGCCAAGTTGAAAGCCCTGGGTCAAT 1074
Query 1017 AGGAAGAAGAGACAGCGATGGTGGTTATGATGGTGCAGAGAGCCCAATGCAGAAGAGCCG 1076
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1075 AGGAAGAAGAGACAGTGATGGTGGGTATGATGGTGCAGAGAGCCCAATGCAGAAGAGCCG 1134
Query 1077 GTCTC---GTTCGCCAGCAGCTGACGAGTGATGAA-AGTGGATCCACAAACTCTCTATCA 1132
||||| |||||||| ||||||||||||||| || ||||||||||||| |||||||||
Sbjct 1135 GTCTCCTCGTTCGCCACCAGCTGACGAGTGAT-AAGAGTGGATCCACAA--TCTCTATCA 1191
Query 1133 GAGTTAGAATGTTGTAACTGTTTGTAGTCAAC---GCTATGTTTGTCGTGATTAGTTTTT 1189
||| || |||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1192 AAGT-AGGATGTTGTAACTGTTTGTAGTCAACAACGCTATGTC-GTCGTGATTAGTTTTT 1249
Query 1190 GTCTTTTG 1197
||| ||||
Sbjct 1250 GTCGTTTG 1257
> AT5G52040.2 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr5:21130320-21133551
FORWARD LENGTH=1426
Length=1426
Score = 737 bits (399), Expect = 0.0
Identities = 618/722 (86%), Gaps = 21/722 (3%)
Strand=Plus/Plus
Query 51 AGGAAGCATGAAGCCAGTCTTCTGTGGGAATTTTGAGTATGATGCACGTGAGGGTGATCT 110
||||| ||||||||| ||||| || || || |||||||||||||| |||||| |||||||
Sbjct 113 AGGAATCATGAAGCCTGTCTTTTGCGGAAACTTTGAGTATGATGCTCGTGAGAGTGATCT 172
Query 111 CGAACGCCTTTTCAGGAAA-TACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTTG 169
|| || ||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 173 TGAGCGGCTTTTCA-GAAAGTACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTTG 231
Query 170 CTTTTGTGTACATGGAAGATGAAAGGGATGCTGAAGATGCCATCCGAGCCCTTGACCG-T 228
||||||| || ||||||||||||||||||||||||||||| || ||||| ||||| || |
Sbjct 232 CTTTTGTCTATATGGAAGATGAAAGGGATGCTGAAGATGCAATTCGAGCGCTTGATCGCT 291
Query 229 ATTGAATTTGGGCGTA-AGGGACGAAGACTTCGTGTTGAATGGACTAAGAGTGAACGTGG 287
|||||| ||| || | ||| ||| ||||| |||||||| ||||| |||| ||| |||||
Sbjct 292 -TTGAATATGGTCGCACAGG-ACGCAGACTCCGTGTTGAGTGGACAAAGAATGACCGTGG 349
Query 288 AGGTGATAGAAGATCTGGTGGCGGTTCAAGGAGATCCTCATCCAGCATGAGACCTTCCAA 347
||||| | ||||||| ||||| ||| |||||||| || || || |||||||||||||
Sbjct 350 AGGTGCTGGAAGATCAGGTGG---TTCGAGGAGATCATCTTCTGGCTTGAGACCTTCCAA 406
Query 348 GACTCTCTTTGTGATTAACTTTGATGCGGATAATACTAGGACCCGGGATCTAG-AGAGAC 406
|||||| |||||||| ||||| ||||| | || |||||||| ||||| || | |||| |
Sbjct 407 GACTCTGTTTGTGATCAACTTCGATGCACAAAACACTAGGACTCGGGA-CTTGGAGAGGC 465
Query 407 ACTTTGAGCCGTATGG-AAAGATCGTAAACGTTAGGATCAGGAGGAATTTCGCATTTATC 465
|||||||||||||||| ||| || || || ||||| ||||| |||||||| ||||| |||
Sbjct 466 ACTTTGAGCCGTATGGTAAA-ATTGTTAATGTTAGAATCAGAAGGAATTTTGCATTCATC 524
Query 466 CAATATGAGGCACAAGAGGATGCCACAAGAGCACTGGACGCTACAAATAACAGTAAGCTG 525
||||||||||||||||| ||||| || ||||||||||| ||||||||| ||||||||||
Sbjct 525 CAATATGAGGCACAAGAAGATGCTACCAGAGCACTGGATGCTACAAATTCCAGTAAGCTG 584
Query 526 ATGGATAAGGTGATCTCGGTGGAGTATGCGGTGAAGGATGATGATGCTAGAGGGAATGGA 585
||||||||||||||||| ||||||||||| ||||| ||||||||| | ||||| ||||||
Sbjct 585 ATGGATAAGGTGATCTCAGTGGAGTATGCAGTGAAAGATGATGATTCAAGAGGAAATGGA 644
Query 586 CACAGTCCTGAAAGACGCCGTGATAGGTCACCTGAAAGGAGAAGGCGGTCACCTAGTCCT 645
|||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 645 TACAGTCCTGAAAGACGGCGTGATAGGTCACCTGATAGGAGAAGGCGATCACCAAGTCCT 704
Query 646 TACAAAAGAGAAAGAGGAAGCCCTGATTATGGCCGAGGTGCTAGTCCTGTTGCTGCCTAC 705
|||| ||||||||| ||||| ||||| |||||||||||||||||||| || ||| | ||
Sbjct 705 TACAGAAGAGAAAGGGGAAGTCCTGACTATGGCCGAGGTGCTAGTCCAGTAGCT-C--AC 761
Query 706 AGAAAGGAAAAA-ACCAGTCCTGACTATGGTCG---AAGACGTAGCCAAAGTCCTTACAA 761
| ||||| ||| || |||||||| |||||||| |||||| |||| || ||||||||
Sbjct 762 A-AAAGGGAAAGGACTAGTCCTGATTATGGTCGTGGAAGACGCAGCCCCAGCCCTTACAA 820
Query 762 GA 763
||
Sbjct 821 GA 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5