BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492281
Length=2379
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25450.1 | Symbols: ATNAP8, NAP8 | non-intrinsic ABC protein... 2462 0.0
> AT4G25450.1 | Symbols: ATNAP8, NAP8 | non-intrinsic ABC protein
8 | chr4:13009733-13013971 REVERSE LENGTH=2316
Length=2316
Score = 2462 bits (1333), Expect = 0.0
Identities = 1437/1486 (97%), Gaps = 11/1486 (1%)
Strand=Plus/Plus
Query 872 GTTTTTGGAACAATCTGCATTCTATTTACTCTATCTCCTCAACTTGCACCTGTGCTTGGT 931
|||||||||||||| || || |||||||||||||||||||||||||||||||| ||||||
Sbjct 765 GTTTTTGGAACAATATGTATCCTATTTACTCTATCTCCTCAACTTGCACCTGTACTTGGT 824
Query 932 CTATTGATGCTTGCAGTGTCAGTAT-TAGTTGCTGTGTACAAGAGATCGACTGTTCCTGT 990
||||||||||| || |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 825 CTATTGATGCTAGCTGTGTCAGT-TCTAGTTGCTGTGTACAAGAGATCGACTGTTCCTGT 883
Query 991 TTATAAATCACATGGATTAGCTCAAGCAACAATGTCTGATTGTGTATCAGAAACGTTCTC 1050
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 TTATAAATCGCATGGATTAGCTCAAGCAACAATGTCTGATTGTGTATCAGAAACGTTCTC 943
Query 1051 TGCAATCCGAACTGTAAGATCATTCAGCGGTGAAAAACGTCAGATGTCTCTCTTTGGTAG 1110
|||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||
Sbjct 944 TGCAATCCGAACTGTAAGATCATTCAGCGGCGAAAAACGTCAGATGTCTATCTTCGGTAG 1003
Query 1111 TCAGATTCTTTCTTACAAGCTTAGCGGCTTAAAGCTTGGTACTTTCAAGTCTATAAATGA 1170
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 TCAGATTCTTGCTTACAAGCTTAGCGGCTTAAAGCTTGGTACTTTCAAGTCTATAAATGA 1063
Query 1171 ATCTATAACAAGAGTTGCTGTTTATATTTCTCTGTTGGCTCTTTACTGTCTCGGGGGAAG 1230
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1064 ATCTATAACAAGAGTTGCTGTTTATATTTCTCTGTTGGCTCTTTACTGTCTTGGGGGAAG 1123
Query 1231 CAAGGTGAAGACGGGTGAGCTCGCTGTTGGAACAGTTGTTTCGTTCATTGGATACACATT 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 CAAGGTGAAGACGGGTGAGCTCGCTGTTGGAACAGTTGTTTCGTTCATTGGATACACATT 1183
Query 1291 CACTCTAACATTTGCTGTCCAAGGGCTTGTAAACACGTTTGGAGATCTACGTGGGACTTT 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 CACTCTAACATTTGCTGTCCAAGGGCTTGTAAACACGTTTGGAGATCTACGTGGGACTTT 1243
Query 1351 TGCTGCTATTGACAGGATCAATTCCATTTTAAACGCGGTGGACATAGATGAGGCTCTTGC 1410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 TGCTGCTATTGACAGGATCAATTCCATTTTAAACGCGGTGGACATAGATGAGGCTCTTGC 1303
Query 1411 CTACGGGTTAGAAAGAGATATAAATACAAAGAAAATCCAAGATGAAAACCTTAAATTGTT 1470
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1304 CTACGGGTTAGAAAGAGATATACATACAAAGAAAGTCCAAGATGAAAACCTTAAATTGTT 1363
Query 1471 CTTGTCTTCTGGCCCTAATGTGAATATCCGTCACCTCGATAACTACTACATGTCAAATCT 1530
||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1364 CTTGTCTGCTGGCCCAAATGTGAATATCCGTCACCTCGATAAGTACTACATGTCAAATCT 1423
Query 1531 GAAATCAACTAACAATCTTCGTACCCTAACATGGGCAGGAGATGTCTGTCTTGATGATGT 1590
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1424 GAAATCAACTAACAATCTACGTACCCTAACATGGGCTGGAGATGTCTGTCTTGATGATGT 1483
Query 1591 GCATTTTGCTTATCCTCTACGACCCGACGTGAAAGTTCTTGATGGGCTGAGTTTAACGTT 1650
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1484 GCATTTTGCTTATCCTCTACGACCCGACGTGAAAGTTCTTGATGGGCTGAGTTTGACGTT 1543
Query 1651 GAATTCTGGTACCGTAACTGCTCTTGTTGGCTCTAGTGGTGCGGGAAAAAGTACTATTGT 1710
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 GAATTCTGGTACTGTAACTGCTCTTGTTGGCTCTAGTGGTGCGGGAAAAAGTACTATTGT 1603
Query 1711 ACAGTTATTGGCACGCTTCTATGAGCCAACACAAGGACGTATTACTGTGGGTGGAGAAGA 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 ACAGTTATTGGCACGCTTCTATGAGCCAACACAAGGACGTATTACTGTGGGTGGAGAAGA 1663
Query 1771 TGTGAGGATGTTTGACAAGAGTGAATGGGCTAAGGTTGTCTCAATTGTGAATCAGGAACC 1830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 TGTGAGGATGTTTGACAAGAGTGAATGGGCTAAGGTTGTCTCAATTGTGAATCAGGAACC 1723
Query 1831 TGTTCTCTTTTCTCTCTCCGTGGCCGAGAATATTGCATATGGTCTCCCCAATGAGCATGT 1890
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1724 GGTTCTCTTTTCTCTCTCCGTGGCCGAGAATATTGCATATGGTCTCCCCAATGAGCATGT 1783
Query 1891 GTCCAAGGACGACATCATTAAGGCAGCCAAAGCTGCCAACGCTCATGATTTCATAATCTC 1950
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1784 GTCCAAGGACGACATCATTAAGGCAGCCAAAGCTGCCAACGCTCATGATTTTATAATCTC 1843
Query 1951 ACTTCCTCAGGGCTACGATACACTGGTTGGTGAAAGAGGAGGGTTGCTTAGCGGAGGACA 2010
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1844 ACTTCCTCAGGGATACGATACACTGGTTGGTGAAAGAGGAGGCTTGCTTAGCGGAGGACA 1903
Query 2011 GA-GACAGAGAGTTGCCATAGCCCGATCTCTGCTGAAGAATGCCCCCATCTTGATTCTCG 2069
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1904 -ACGACAGAGAGTTGCCATAGCCCGATCTCTGCTGAAGAATGCCCCCATCTTGATTCTCG 1962
Query 2070 ATGAGGCCACAAGTGCGCTTGATGCAGTGAGCGAGCGGTTGGTCCAGAGTGCGTTGAACC 2129
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1963 ATGAGGCCACAAGTGCGCTGGATGCAGTGAGCGAGCGGTTAGTCCAGAGTGCGTTGAACC 2022
Query 2130 GTCTGATGAAAGACAGGACAACATTAGTCATCGCTCACAGATTGAGTACAGTACAGAGCG 2189
||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct 2023 GTCTGATGAAAGACAGGACAACATTAGTCATCGCTCACAGACTGAGCACAGTTCAGAGCG 2082
Query 2190 CGAATCAGATAGCTGTATGCTCTGATGGGAGGATCATAGAGCTTGGAACACATTCAGAAT 2249
|||||||||| ||||| ||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 2083 CGAATCAGATCGCTGTGTGCTCTGATGGGAAGATCATAGAGCTTGGAACACATTCCGAAT 2142
Query 2250 TGGTGGCGCAAAAGGGATCATATGCTTCACTTGTTGGCACTCAGAGGCTAGCCTTTGAGT 2309
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2143 TGGTAGCGCAAAAGGGATCATATGCTTCACTTGTTGGCACTCAGAGACTAGCCTTTGAGT 2202
Query 2310 AATTTAC-T---C--GGTGTAATCTGTAACAAATGACTA-AAAATT 2348
||||||| | | |||||||| |||||||||| |||| ||||||
Sbjct 2203 AATTTACCTTAACTCGGTGTAATTTGTAACAAATTACTACAAAATT 2248
Score = 1110 bits (601), Expect = 0.0
Identities = 711/763 (93%), Gaps = 11/763 (1%)
Strand=Plus/Plus
Query 1 TTCCAAAATTAGCCATTTTTATGCAGCCGTGAAGCTCGTTGGACCACCAAGATCAATGGC 60
||||||||||||||| |||||| ||| || ||||||||||| ||||| |||||||||
Sbjct 9 TTCCAAAATTAGCCA-TTTTATACAGTGGTTAAGCTCGTTGG---ACCAATATCAATGGC 64
Query 61 GTCTGCAACCACTCTTTTGTTCCACCACGGTTCCACTCGAGTCCTCGTAGCTCGTAGACG 120
||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 65 GTCTGCAACGACTCTTCTCTTCCACCACGGTTCCACTCGAGTCCTCGTCGCTCGTAGACG 124
Query 121 GTGTCAAGCCTCTGTCCTTA-AACCT--GGCGGACTAAAGCCCTTGATTTCCTTCCGCAG 177
||| ||||| || ||||||| | ||| ||||| |||||||||| |||||||| ||||
Sbjct 125 GTGCCAAGCTTCAGTCCTTAGACCCTACGGCGGTTTAAAGCCCTTTCTTTCCTTCTGCAG 184
Query 178 CTTACCTAGCTCCACTGCGCCGTCCCGGCCTTCGTTGAG-GCTGAAATCCGATGGCTTGG 236
|||||||| |||||||||||||| |||| ||||||||| || ||||||||||| ||||
Sbjct 185 CTTACCTAACTCCACTGCGCCGTTCCGGGATTCGTTGAGAGC-AAAATCCGATGGATTGG 243
Query 237 CTCGGGCCTATGTTACTGGAGCGCCGCCTATCGTGGACGAACCAGACCCAAAGATTGAAG 296
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 244 CTCGGGCCTATGTTACCGGAGCGCCGCCTATCGTGGAAGAACCAGACCCAAAGATTGAAG 303
Query 297 AATCCAAATCTGAGGCTGAATCGAAGGATTTAATCT-GTTGGGGGCTTGTGTGGAGCTTG 355
|||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 304 AATCCAAATCTGAGGCTGAATCGAAGGATTTAAT-TAGTTGGGGGCTTCTGTGGAGCTTG 362
Query 356 ATGAGCAAGCACAAGCTCAGGCTTAGTGTTTGCTTATTGACTCTCCTTGGCTGCAGTACT 415
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 363 ATGAGCAAGCACAAGCTCAGGCTCAGTGTTTGCTTATTGACTCTCCTTGGATGCAGTACT 422
Query 416 TGCACTCTCTCTATGCCTGTTTTTTCTGGTAGATTCTTTGAAGTGCTGATTGGGGTGAGA 475
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 423 TGCACTCTCTCTATGCCTGTTTTTTCTGGTAGATTCTTTGAAGTACTGATTGGGGTGAGA 482
Query 476 CCAGAGCCTCTGTGGCGGCTGCTGAGCAAAATTGCTGTTTTGTACTCGTTGGAACCCATT 535
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 CCGGAGCCTTTGTGGCGGCTGCTGAGCAAAATTGCTGTTTTGTACTCGTTGGAACCCATC 542
Query 536 TTTACTATTGCTTTTGTGACCAACATGACTGCTATCTGGGAAAACGTTATGGCAACATTA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 543 TTTACTATTGCTTTTGTGACCAACATGACTGCTATCTGGGAAAACGTTATGGCAATATTA 602
Query 596 AGAGCTCAGATTTTCAGAAGGGTTTTGATCCAGAAGGCAGAGTTTTTCGACAAATATAAG 655
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 603 AGAGCTCAGATTTTCAGAAGGGTTTTGATCCAGAAGGCAGAGTTCTTCGACAAATACAAG 662
Query 656 GTAGGAGAGCTGACGGGGCTGCTCACGTCTGACCTTGGTGCTCTGAATAGCATCGTGAAT 715
|| |||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 663 GTTGGAGAGCTAACGGGGCTACTCACGTCTGATCTTGGTGCTCTGAATAGCATTGTGAAT 722
Query 716 GATAACATCTCACGAGATCGTGGATTTAGGGCATTTACAGAGG 758
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GATAACATCTCACGAGATCGTGGATTTAGGGCATTTACAGAGG 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118121882385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5