BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492287
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25420.1 | Symbols: GA5, GA20OX1, AT2301, ATGA20OX1 | 2-oxog... 1796 0.0
> AT4G25420.1 | Symbols: GA5, GA20OX1, AT2301, ATGA20OX1 | 2-oxoglutarate
(2OG) and Fe(II)-dependent oxygenase superfamily
protein | chr4:12990884-12992458 REVERSE LENGTH=1281
Length=1281
Score = 1796 bits (972), Expect = 0.0
Identities = 1105/1169 (95%), Gaps = 9/1169 (1%)
Strand=Plus/Plus
Query 1 AATCTCTGAAAATGGCCGTAAGTTTCGTAACAACATCTCCTGAGGAAGAAGAAGCCAAAC 60
||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 39 AATCTCTCAAAATGGCCGTAAGTTTCGTAACAACATCTCCTGAGGAAGAAG-A--CAAAC 95
Query 61 CCAAACTAGGCCTTGGAAATATTCAAACTCCATTAATCTTCAATCCTTCAATGCTTAACC 120
| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 96 CGAAGCTAGGCCTTGGAAATATTCAAACTCCGTTAATCTTCAACCCTTCAATGCTTAACC 155
Query 121 TTCAACCCAATATCCCTAACCAATTCATTTGGCCTGACGACGAAAAACCTTCCATCGACG 180
||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 156 TTCAAGCCAATATCCCAAACCAATTCATCTGGCCTGACGACGAAAAACCTTCCATCAACG 215
Query 181 TACCCGAGCTTGATGTTCCTCTCATCGATCTTCAAAACCTTCTCTCTGCTCCTTCCTCCA 240
| | |||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||
Sbjct 216 TTCTCGAGCTTGATGTTCCTCTCATCGACCTTCAAAACCTTCTCTCTGATCCATCCTCCA 275
Query 241 CTTTAGAAGCTTCCAGACAAATCTCCGAGGCCTGTAAGAAGCACGGGTTCTTCCTCGTGG 300
||||||| ||||| |||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 276 CTTTAGATGCTTCGAGACTGATCTCTGAGGCCTGTAAGAAGCACGGTTTCTTCCTCGTGG 335
Query 301 TCAATCACGGCATCAGCGAGAAGCTTATATCAGACGCTCATGAATACACGAGCCGTTTCT 360
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct 336 TCAATCACGGCATCAGCGAGGAGCTTATTTCAGACGCTCATGAATACACGAGCCGCTTCT 395
Query 361 TTGATATGCCTCTCTCTGAAAAACAGAGGGTTCTTAGAAAACCCGGCGAGAGTGTTGGCT 420
|||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||
Sbjct 396 TTGATATGCCTCTCTCCGAAAAACAGAGGGTTCTTAGAAAATCCGGTGAGAGTGTTGGCT 455
Query 421 ACGCAAGCAGTTTCACCGGCCGCTTCTCCACCAAGCTTCCATGGAAGGAAACCCTTTCTT 480
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 456 ACGCAAGCAGTTTCACCGGACGCTTCTCCACCAAGCTTCCATGGAAGGAGACCCTTTCTT 515
Query 481 TCCGGTTTTGCGACGACAAGAGCCGCTCAAAATCTGTTCAAGATTACTTCTGCGATGCGT 540
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 516 TCCGGTTTTGCGACGACATGAGCCGCTCAAAATCCGTTCAAGATTACTTCTGCGATGCGT 575
Query 541 TGGGACATGGGTTTGAGCCATTTGGGAAGGTGTATCAAGAGTACTGTGAGGCAATGAGTT 600
|||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 576 TGGGACATGGGTTTCAGCCATTTGGGAAGGTGTATCAAGAGTATTGTGAAGCAATGAGTT 635
Query 601 CTCTCTCACTGAAGATCATGGAGCTTCTGGGGCTAAGTTTAGGCGTAAACCGGGACTACT 660
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 636 CTCTATCACTGAAGATCATGGAGCTTCTGGGGCTAAGTTTAGGCGTAAAACGGGACTACT 695
Query 661 TTAGAGACTTTTTCGGAGAAAATGATTCAATTATGAGACTGAACTACTACCCTCCATGTC 720
||||||| ||||||| |||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 696 TTAGAGAGTTTTTCGAAGAAAACGATTCAATAATGAGACTGAATTACTACCCTCCATGT- 754
Query 721 A-GAAACCAGATCTCACACTAGGAACAGGACCTCATTGTGATCCAACTTCTCTTACCATC 779
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 755 ATAAAACCAGATCTCACACTAGGAACAGGACCTCATTGTGATCCAACATCTCTTACCATC 814
Query 780 CTTCACCAAGACCATATCAACGGCCTTCAAGTCTTTGTGGAAAATCAATGGCGCTCCATT 839
||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTTCACCAAGACCATGTTAATGGCCTTCAAGTCTTTGTGGAAAATCAATGGCGCTCCATT 874
Query 840 CGTCCCAATCCCAAGGCCTTTGTGGTCAATATCGGCGATACTTTCATGGCTCTATCGAAC 899
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 CGTCCCAACCCCAAGGCCTTTGTGGTCAATATCGGCGATACTTTCATGGCTCTATCGAAC 934
Query 900 GATAGATACAAGAGCTGCTTGCACCGGGCGGTGGTGAACAGCGAGAGTGAGAGGAAATCA 959
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 935 GATAGATACAAGAGCTGCTTGCACCGGGCGGTGGTGAACAGCGAGAGCGAGAGGAAATCA 994
Query 960 CTTGCATTCTTCTTGTGTCCCAAAAATGACAGAGTAGTGAAGCCACCAACAGAGCTTTTG 1019
|||||||||||||||||||| ||||| ||||||||||||| |||||| | ||||||||||
Sbjct 995 CTTGCATTCTTCTTGTGTCCGAAAAAAGACAGAGTAGTGACGCCACCGAGAGAGCTTTTG 1054
Query 1020 GACAGCATCACATCAAGAAGATACCCTGACTTCACATGGTCTATGTTCCTTGAGTTCACT 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 GACAGCATCACATCAAGAAGATACCCTGACTTCACATGGTCTATGTTCCTTGAGTTCACT 1114
Query 1080 CAGAAACACTATAGAGCAGACATGAACACTCTCCAAGCCTTCTCAGATTGGCTCACCAAA 1139
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1115 CAGAAACATTATAGAGCAGACATGAACACTCTCCAAGCCTTTTCAGATTGGCTCACCAAA 1174
Query 1140 CCCA---A-GAAATAAAATATCCATGTCT 1164
|||| | |||||||||||| |||||||
Sbjct 1175 CCCATCTAAGAAATAAAATATTCATGTCT 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57128220210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5