BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492289
Length=551
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25400.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 715 0.0
AT5G51780.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 169 3e-41
> AT4G25400.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:12981295-12982468 FORWARD
LENGTH=625
Length=625
Score = 715 bits (387), Expect = 0.0
Identities = 511/567 (90%), Gaps = 24/567 (4%)
Strand=Plus/Plus
Query 1 ATGGAGAA---AGTACACAAAGAAGTTGAGAAACAAAGGAGACAAGAAATGGCTTCTCTT 57
|||||||| |||||| |||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGAGAAGTTAGTACATAAAGAAATTGAGAAACGAAGGAGACAAGAAATGGCTTCTCTC 60
Query 58 TACACGTCTCTCCGCTCTCTTCT-CCTGTTGGAGTTCATCCAGGGAAAGCGTTCGACAG- 115
||| ||||||||||||||||||| ||| || ||||||||||||||||| ||||| || |
Sbjct 61 TACGCGTCTCTCCGCTCTCTTCTCCCT-TTAGAGTTCATCCAGGGAAAACGTTCAAC-GT 118
Query 116 CAGATCAGGTGAACGGGGCGGTGAATTACATTGAGTATTTGCAAAGGAATATCAAGGACA 175
||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||
Sbjct 119 CAGATCAGGTGAAAGGGGCAGTGAATTACATAGACTATTTGCAAAGGAATATCAAAGACA 178
Query 176 TAAGTTCCAAGAGAGATGACCTCGTGTTATTGTCTGGACGAAGCTTTGGGAGTAGTAATG 235
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 179 TAAATTCCAAGAGAGATGACCTCGTGTTATTGTCTGGACGAAGCTTTAGGAGTAGTAATG 238
Query 236 AACAAGACTGGAATCAGATTTCGAATCATGTCGTGATCATTCGTCCGTGTTTGGTCGGGA 295
||||||| |||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 239 AACAAGAATGGAATGAGATTTCGAATCATGTCGTG---ATTCGTCCGTGTTTGGTCGGCA 295
Query 296 TAGAAATCGTATTTAGCGTTCTCCAAACGCCGTTCTCAAGCGTTCT-CAAAGTGATTCGT 354
|||| || || || ||| ||||||||||||| |||||||||||||| | ||||| |||||
Sbjct 296 TAGAGATAGTGTTGAGCATTCTCCAAACGCCATTCTCAAGCGTTCTGC-AAGTGCTTCGT 354
Query 355 GAACACGGTCTCTGTGTTCTTGGCTGCATCTCTTCCAGTGTAAATGATAAGACTCATTCA 414
||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||||
Sbjct 355 GAACACGGTCTCTATGTTCTTGGCTACATCTGTTCCAGTGTAAATGAT-AGACTCATTCA 413
Query 415 CACTCTACAGGCTGA-GTCAACGATCTGGCTTTGATCGACTTAGCAGACCTTAAGGATAC 473
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TACTCTACAGGCTGAGGTCAACGATCTGGCTTTGATCGACTTAGCAGACCTTAAGGATAC 473
Query 474 ACTTACCCTAATGAAGTAATT-AAA----C----Gttttttt-CAGTAGATTCCTTTTAA 523
||||||||| ||||||||||| ||| | |||||||| |||||||||||||||||
Sbjct 474 ACTTACCCTGATGAAGTAATTCAAATAATCAAACGTTTTTTTTCAGTAGATTCCTTTTAA 533
Query 524 CTTCTCCAACCAAAACGATGTACATAT 550
|||||| ||||||||||||||| ||||
Sbjct 534 CTTCTCAAACCAAAACGATGTATATAT 560
> AT5G51780.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:21034823-21036773 FORWARD
LENGTH=908
Length=908
Score = 169 bits (91), Expect = 3e-41
Identities = 196/245 (80%), Gaps = 14/245 (6%)
Strand=Plus/Plus
Query 1 ATGGAGAA-A-G-TACACAAAGAAGTTGAGAAACAAAGGAGACAAGAAATGGCTTCTCTT 57
|||||||| | | | |||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 57 ATGGAGAAGATGATGCACAGAGAAACTGAGAGGCAAAGGAGACAAGAAATGGCTTCTCTT 116
Query 58 TACACGTCTCTCCGCTCTCTTCTCC-TGTTGGAGTTCATCCAGGGAAAGCGTTCGACAG- 115
|| | ||||| || |||||||||| | || | |||||| |||| ||||||||||| |
Sbjct 117 TATGCCTCTCTTCGTTCTCTTCTCCCTCTTC-ACTTCATCAAGGGTAAGCGTTCGAC-GT 174
Query 116 CAGATCAGGTGAACGGGGCGGTGAATTACATTGAGTATTTGCAAAGGAATATCAAGGA-C 174
||||||| || |||| ||||||||| ||||| ||||| | || ||||| |||||||| |
Sbjct 175 CAGATCAAGTCAACGAGGCGGTGAACTACATAAAGTATCTACAGAGGAAGATCAAGGAGC 234
Query 175 ATAAGT-TCCAAGAGAGATGACCTCGTGTTATTGTCTGGACGAAGCTT-T-GGG-AGTAG 230
||||| | | ||||||||| ||| || || ||||| || |||| || | ||| |||||
Sbjct 235 -TAAGTGTG-AGGAGAGATGATCTCATGGTACTGTCTAGAGGAAGTTTATTGGGTAGTAG 292
Query 231 TAATG 235
|||||
Sbjct 293 TAATG 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26423161322
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5