BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492293
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25370.1 | Symbols: | Double Clp-N motif protein | chr4:129... 1284 0.0
> AT4G25370.1 | Symbols: | Double Clp-N motif protein | chr4:12972708-12974870
FORWARD LENGTH=1046
Length=1046
Score = 1284 bits (695), Expect = 0.0
Identities = 920/1020 (90%), Gaps = 49/1020 (5%)
Strand=Plus/Plus
Query 1 GAGTGAAAATGGCGTCGTACACAGTAGTATCCTTTATCCCTCTGACGGTCTCTAATCCTC 60
|||||||||||||||||||||| ||| |||||||||||| ||||| ||||||||||||
Sbjct 32 GAGTGAAAATGGCGTCGTACAC---AGTCTCCTTTATCCCTTTGACGCTCTCTAATCCTC 88
Query 61 GGATCTTTGTTACGAGACAGAATGGATCTTCCTCGTCTTCTTCTCGGATTCCTCTTACAT 120
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || |
Sbjct 89 GGATCTTTGTTTCGAGACAGAATGGATCTCCCTCGTCTTCTTCTCGGATTCCTCTAACGT 148
Query 121 CTTCTCTGTTAGGTAAGAAGCTTGTGGCGACACAACCGTCGCATCGGTGCTTCGTCCCCA 180
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 149 CTTCTCTGTTAGGTAAGAAGCTTCTGGCGACACAACCGTCGCATCGCTGCTTCGTCCCCA 208
Query 181 AGCTCCGGTGCTTGACCTCAGCTAGCACGGTCTTAAATGTTCCAACTGCGCAACCGGAGA 240
||||||||||||||||||| || |||||||||||||| || || | ||||||||||||||
Sbjct 209 AGCTCCGGTGCTTGACCTCGGCCAGCACGGTCTTAAACGTCCCTATTGCGCAACCGGAGA 268
Query 241 ATGGTTCTTCGGATAAGATCCCAAAATGGTCGGCGAGAGCTATAAAGTCACTTGCAATGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 ATGGTTCTTCGGATAAGATCCCAAAATGGTCGGCGAGAGCTATAAAGTCACTTGCAATGG 328
Query 301 GAGAATTGGAGGCTAGGAAGCTTAAGTATCCAAGTACCGGGACCGAAGCCATTCTCATGG 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 329 GAGAATTGGAGGCTAGGAAGCTCAAGTATCCAAGTACCGGGACCGAAGCCATTCTCATGG 388
Query 361 GTATTTTAGTCGAAGGCACTAGCACAGTTGCTAAGTTCCTGAGGGGGAATGGAGTTACGC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 389 GTATTTTAGTCGAAGGCACTAGCACAGTTGCTAAGTTCCTGAGGGGGAATGGAGTCACAC 448
Query 421 TTTTTAAGGTGCGAGATGAGACGATAAGCCTGCTGGGGAAATCAGACATGTATTTTTTCA 480
|||| ||||| |||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 449 TTTTCAAGGTTCGAGATGAGACGTTAAGCCTGCTGGGGAAATCAGACATGTACTTTTTCA 508
Query 481 GTCCAGAGCATCCTCCTCTTACTGAACCGGCTCAAAAGGCCATTGCCTGGGCCATTGATG 540
| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 509 GCCCAGAGCATCCTCCTCTAACTGAGCCGGCTCAAAAGGCCATTGCCTGGGCCATTGATG 568
Query 541 AGAAGAACAAATCTGGTGTGGATGGTGAACTAACCACGGCCTACTTGCTTCTGGGGATTT 600
||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 569 AGAAGAATAAATCTGATGTGGATGGGGAACTAACCACGGCCTACTTGCTTCTGGGGGTTT 628
Query 601 GGTATCAAAAGGATTCAGCAGGCCGCCAGATTTTGGAGAAGCTCGGGTTCAACCAAGATA 660
||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 629 GGTCTCAAAAGGATTCAGCAGGCCGCCAGATTTTGGAGAAGCTCGGGTTTAACGAAGATA 688
Query 661 AAGCCAAAGAAGTTGAGAAATCAATGAATGAAGATGTTGATTTGAGCTTCAAGAAACAAG 720
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 689 AAGCCAAAGAAGTTGAGAAATCGATGAATGAAGATGTAGATTTGAGCTTCAAGAAACAAG 748
Query 721 GTCAATAGTGCTGAGGTT-A-A--G----------CTTCTGTAACTGT-AT--A-TGG-A 761
|||||||||| ||||||| | | | ||||||||| ||| || | | | |
Sbjct 749 GTCAATAGTGATGAGGTTTATATCGATTAGAAAAGCTTCTGTAATTGTTATGGAGTAGCA 808
Query 762 ---G----TCTTGATTAAAGACTCAGCAAAAGGACCCCTTTCTTTCATTAGCATTCACTT 814
| |||||||||||||||| || |||| ||||| |||||||||| ||||||||
Sbjct 809 AAAGCAACTCTTGATTAAAGACTCGGCCAAAG-ACCCCA--CTTTCATTAGTATTCACTT 865
Query 815 TCAATACTTGTTTGTGGTTAGCT-TCATTTAGCTTTTCTGTATTATCAGTTTATCACAAT 873
|| |||||||||||||||||| | |||||||||||||| | || || ||||||||
Sbjct 866 TCCATACTTGTTTGTGGTTAG-TGTCATTTAGCTTTTCCG------CA-TT-ATCACAAT 916
Query 874 ATACAACTCTGGAAAATGATTCAGTGATTTGATTCTCGGATAGGTTTATTATGTTACTAA 933
|||||||||||| ||||||||||||| |||| ||||| ||||||||| || ||||||||
Sbjct 917 ATACAACTCTGGCAAATGATTCAGTGCTTTGGTTCTCCGATAGGTTT-TT--GTTACTAA 973
Query 934 AACTTACATCCTCAAATTCTTCATTATTGACACCTTGGTGTCTTCATATGGATGCTGGGT 993
|||| || ||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 974 AACTCACGTCCTC---TG-TTGATTATTGACACCTTGGTGTCTTCATATGGATGCTGGGT 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5