BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492297
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25340.1 | Symbols: FKBP53, ATFKBP53 | FK506 BINDING PROTEIN... 2013 0.0
> AT4G25340.1 | Symbols: FKBP53, ATFKBP53 | FK506 BINDING PROTEIN
53 | chr4:12959442-12962699 REVERSE LENGTH=1716
Length=1716
Score = 2013 bits (1090), Expect = 0.0
Identities = 1365/1492 (91%), Gaps = 42/1492 (3%)
Strand=Plus/Plus
Query 37 AAAATGGGATTCTGGGGACTCGAAGTGAAACCTGGGAAACCTCAAGCTTATAATCCGAAA 96
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||
Sbjct 65 AAAATGGGATTCTGGGGACTTGAAGTGAAACCTGGGAAGCCTCAAGCTTATAATCCAAAA 124
Query 97 AATGAACAAGGAAAGATTCACGTCACCCAGGCAACTCTAGGTGCGGGTTTGAGCAAAGAA 156
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 125 AATGAACAAGGAAAGATTCACGTGACCCAGGCAACTCTAGGTACGGGTTTGAGCAAAGAA 184
Query 157 AAGAGTGTGATTCAGTGTTCTATAGGAGACAAGGCCCCAATTTCCTTGTGTTCATTGTTG 216
|||||||||||||||||||| |||||||||||||| || ||| | |||||||||||||||
Sbjct 185 AAGAGTGTGATTCAGTGTTCAATAGGAGACAAGGCTCCTATTGCTTTGTGTTCATTGTTG 244
Query 217 CCTAACAAAATTGAATGTTGTCCTCTGAATCTTGAGTTTGATGATGATGATGAGCCAGTC 276
|| |||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 245 CCAAACAAAATCGAATGTTGCCCTCTGAATCTTGAGTTTGACGATGATGATGAGCCAGTG 304
Query 277 GAATTCTCCGTGAAC-GGTGACAGAAGTATCCACCTGTCTGGGTTCTTGGAGTATTATGA 335
|||||| ||||| || |||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct 305 GAATTCACCGTG-ACTGGTGACAGAAGTATCCACTTGTCTGGATTCTTGGAGTATTATCA 363
Query 336 GGA-GAATGAAGATGATTACGAGCAGGATGAGGATGATTCAGATGGTATTGATGTTGGTG 394
||| | ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 364 GGACG-ATGAAGATGATTATGAGCATGATGAAGATGATTCAGATGGTATTGATGTTGGTG 422
Query 395 AATCTGAGTCAGACGATTCGTGTGAATATGATAGTGAAGAGGATGATCAATTGGATGAAT 454
| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 423 AGTCTGAGGAAGACGATTCGTGTGAATATGATAGTGAAGAGGATGAGCAATTGGATGAAT 482
Query 455 TTGAAGACTTTCTTGATAGCAATCTTGAAATGTATCGGAAAGCTGCTGCCCCAAAGAGTG 514
|||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 483 TTGAAGACTTCCTTGATAGCAATCTTGAAAGGTATCGGAATGCTGCTGCCCCAAAGAGTG 542
Query 515 GAGTTATAATTGAGGAGATAGAAGATGAAGAGAAACCTGCCAAAGATAATAAGGCAAAAC 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 GAGTTATAATTGAGGAGATAGAAGATGAAGAGAAACCTGCCAAAGATAATAAGGCAAAAC 602
Query 575 GAATCAAGAAGAAGAGTCAGGCTAGCGAAGATGAGAGTGCAAAGAAACAAATTGTTGCCA 634
|| ||||||||||||||| |||||||||| ||||| ||||||||||||||| |||||||
Sbjct 603 AAACCAAGAAGAAGAGTCAAGCTAGCGAAGGTGAGAATGCAAAGAAACAAATCGTTGCCA 662
Query 635 TAGAGAGTGCCCATGTTCCAGTTCTGGAAAGCGAAGAAGAAGACGAAGATGGTTTACCTA 694
||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||
Sbjct 663 TAGAGGGTGCCCATGTTCCAGTTTTGGAAAGCGAAGATGAAGACGAAGACGGTTTACCTA 722
Query 695 TTCCTAAAGGAAAAGCACCTGAACTAGAGACTGAGTCAGGTGAGAAGATGGACT-TAGAT 753
|||||||||||||| || ||||| |||||| || ||||||||||||||||| | |||||
Sbjct 723 TTCCTAAAGGAAAATCATCTGAAGTAGAGAATGCGTCAGGTGAGAAGATGGT-TGTAGAT 781
Query 754 AATGACGAACAAGGTAGTAACAAGAAACGGAAGGCCAAGGCTGCTGAGCaaga--a---a 808
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 782 AATGACGAACAAGGTAGTAACAAGAAACGGAAGGCCAAGGCTGCTGAGCAAGATGATGGA 841
Query 809 ---gt--gt--aaacaagagtaaaaagaagaaaaaccagaaagaaaagaagaatggggaa 861
| || |||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 842 CAAGAAAGTGCAAACAAGAGTAAAAAGAAGAAAAATCAGAAAGAGAAGAAGAAAGGGGAA 901
Query 862 aaCACCTCAAATGAGGAAGCTGATGAACAAGTTCCGACGGGAAATGTGCTGAAAAAGCAG 921
|| || |||||||||||||| || ||||||| |||||||||||| ||||| ||||||
Sbjct 902 AATGTCTTAAATGAGGAAGCTG--GA-CAAGTTCAGACGGGAAATGTTCTGAAGAAGCAG 958
Query 922 GAAACCAGCCAAATTTCTTCAAACACGAAAGCTCAAAATGGAACTGCAGACCATGCAATG 981
|| | |||||||||||||||||||| ||||||||| ||||||||||| || |||| |||
Sbjct 959 GATATTAGCCAAATTTCTTCAAACACAAAAGCTCAAGATGGAACTGCAAACAATGCCATG 1018
Query 982 AGTGAAAGCTCCAAGACCCCAGATAAATCTGCTGagaagaaaaagaaaaataagaaaaag 1041
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1019 AGTGAAAGCTCCAAGACCCCAGATAAATCTGCTGAGAAGAAAACTAAAAATAAGAAAAAG 1078
Query 1042 aagaa-CTCAAGTGAGGAAGCTACAGTTGGGAGTAAAACCATTTCTGGTACTGTTGAGAA 1100
||||| | ||||||| |||||| ||| | || |||||||||||||||||||
Sbjct 1079 AAGAAAC-CAAGTGACGAAGCTGCAG-----A--AA-----TTTCTGGTACTGTTGAGAA 1125
Query 1101 GCAAACCCAAGAGGACTCAAAGTCTTCTCAAGTACGGACATACCCAAATGGGCTCATTGT 1160
|||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 GCAAACCCCAGCGGACTCCAAGTCTTCTCAAGTACGGACATACCCAAATGGGCTCATTGT 1185
Query 1161 TGAAGAGTTGAGCATGGGCAAACCCAACGGCAAGAGAGCTGATCCTGGAAAAACGGTTTT 1220
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TGAAGAGTTGAGCATGGGAAAACCCAACGGCAAGAGAGCTGATCCTGGAAAAACGGTTTC 1245
Query 1221 TGTCCGCTACATTGGTAAACTTCAGAAGAATGGGAAGATTTTCGATTCCAACATTGGAAA 1280
||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 TGTGCGCTATATTGGAAAACTTCAGAAGAATGGGAAGATTTTCGATTCCAACATTGGAAA 1305
Query 1281 ATCACCATTTAAGTTTCGTCTAGGTATTGGA-CAAGTCATTAAGGGATGGGATGTTGGCG 1339
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 1306 ATCACCATTTAAGTTTCGTCTAGGTATTGGATCA-GTCATTAAGGGATGGGATGTTGGAG 1364
Query 1340 TTAATGGCATGCGTGTTGGTGACAAAAGGAAGCTTACAATTCCTCCATCAATGGGGTATG 1399
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TTAATGGCATGCGCGTTGGTGACAAAAGGAAGCTTACAATTCCTCCATCAATGGGGTATG 1424
Query 1400 GTCCGAAGGGTGTTGGTGGTGGCCAGATTCCTCCTAATGCTTGGCTGACGTTTGATGTCG 1459
|| |||||||| |||||| |||||||||||||||| |||||||||| ||||||||||
Sbjct 1425 GTGTGAAGGGTGCTGGTGG---CCAGATTCCTCCTAATTCTTGGCTGACTTTTGATGTCG 1481
Query 1460 AACTGATTAATGTTCAATAAAACTGCCCAGAGAATTCATAGAATCTATGATG 1511
|||||||||||||||||||||||||||| || | |||||||||||| |||||
Sbjct 1482 AACTGATTAATGTTCAATAAAACTGCCCTGA-A-TTCATAGAATCTCTGATG 1531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76957435485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5