BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492298
Length=706
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25330.1 | Symbols: | unknown protein; Has 21 Blast hits to... 983 0.0
> AT4G25330.1 | Symbols: | unknown protein; Has 21 Blast hits
to 21 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:12957834-12958714 FORWARD
LENGTH=721
Length=721
Score = 983 bits (532), Expect = 0.0
Identities = 651/709 (92%), Gaps = 6/709 (1%)
Strand=Plus/Plus
Query 1 ATGCACAAGTCTCT-ACTTTCTTATCAGAGTGGAGCGACTAGTCCTACGATTTTCTCCGG 59
|||||||| ||||| || |||| |||||||||| || |||||||| ||| ||||||||||
Sbjct 1 ATGCACAACTCTCTAAC-TTCTAATCAGAGTGGGGCTACTAGTCCGACGGTTTTCTCCGG 59
Query 60 CGAGTTCGCCGACGACGTCGAATGGGGTGATGAAAACTGGCCGGAACTAGAGTTCCGGTC 119
|||||||||||| |||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct 60 CGAGTTCGCCGATGACGTCGACTGGTCCGATGAAAACTGGCCGGAACTAGAGTTCCGTTC 119
Query 120 ACCGGAGGACGAAGCTTGGTACGCCGTGGAGGTTTCGGACATCTGTGACGCTTTGAT-GA 178
| ||||||||||||||||||||||||| || |||| |||||||||||||||||| | ||
Sbjct 120 AGCGGAGGACGAAGCTTGGTACGCCGTAGAATTTTCTGACATCTGTGACGCTTTG-TGGA 178
Query 179 TCAGCTTCAACGGCTTCTCTTATGAGCACGACGAGTTTTATCCGGCGGACGATTTCACGA 238
||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 179 TCAGCTTCAACGGCTTCTCTTATGAGCACGACGAGTTTTATCCAGCTGACGATTTCAAAA 238
Query 239 CCTCCGACGAGATTCAAGAGTTTGAAGAGAGGTTTCGAGCTTGTTCTGAGCAGATGCAAG 298
|||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 239 ACTCCGACGAGATTCAAGAATTCGAAGAGAGGTTTCGAGCTTGTTCCGAGCAGATGCAAG 298
Query 299 ACGTCGAGTGCCCCAAGGTCCATGAAGGCACCAAAGTCTGCGCCACATGTCCTTCCGTCA 358
|| |||| || ||||||||||||||||||||| | ||||||||||| | |||||||||||
Sbjct 299 ACATCGAATGTCCCAAGGTCCATGAAGGCACCCAGGTCTGCGCCACGTTTCCTTCCGTCA 358
Query 359 CTGGAGAAGTCAAGTTCTATGACGCTATCGTCGTTACGGTGGAGAGGATGAAGCATGAAA 418
| | ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 359 CCGAAGAAGTCAAGTTCTACGACGCTATCGTCGTTACGGTGGAGAGGACGAAGCATGAAC 418
Query 419 GAGACGAGGAAGGGAACGAAGTTTGTGGATGTGATTTCAAACTATTCTGGAAACAAGGTC 478
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 419 GAGACGAGGAAGGGAACGAAATTTGTGGATGTGATTTCAAACTTTTCTGGAAACAAGGTC 478
Query 479 CTTATATTAACCAAGTGACCACTGCGAAAGTTGGAGACATTTGTCTCAGAGCAGAGGATA 538
||| |||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||
Sbjct 479 CTTGGATTAACCAAGTGACTACTGCGAAAGTTGGAGATATTTGTCTCAGAGCAAAGGATA 538
Query 539 ATCGAATGAATCCAAAAGTGGTTTCGTTCTTAAAAGAAGCTAGAAGGAAGCTTCATGGTG 598
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 539 ATCGAATAAATCCAAAAGTGGTTTCGTTCTTGAAAGAAGCTAGAAGGAAGCTTCATGGAG 598
Query 599 AACCATGTAACCAAGGGGAAGAGACAGAGTGGCAAAAGATTCTTGAGAAGGTGAATTCTG 658
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AAACATGTAATCAAGGGGAAGAGACAGAGTGGCAAAAGATTCTTGAGAAGGTGAATTCTG 658
Query 659 CTATTCGAAACAACTTAAGTGTTGATGGTT-AGTTATGTTATGTTGCTT 706
|||||| |||||||||||| |||||||| | | ||||||||||||||||
Sbjct 659 CTATTCAAAACAACTTAAGCGTTGATGGATGA-TTATGTTATGTTGCTT 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34209454107
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5