BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492300
Length=712
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25315.1 | Symbols: | Expressed protein | chr4:12951360-129... 1160 0.0
> AT4G25315.1 | Symbols: | Expressed protein | chr4:12951360-12952870
REVERSE LENGTH=719
Length=719
Score = 1160 bits (628), Expect = 0.0
Identities = 684/712 (96%), Gaps = 0/712 (0%)
Strand=Plus/Plus
Query 1 CTGACCCGTTTCTTCTTCCGGCACTGAGCAGACAGGATGAGCTCGGAGAACGAAGACTCT 60
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1 CTGACCCGTTTCTTCTTCCGGCACTAAGCAGACACGATGAGCTCGGAGAACGAAGACTCT 60
Query 61 TCAGCTGTGCGACGGCGCGTGTCCTGCACTAAATGCTTCGACGCTCTCTGGTTCTGCTAC 120
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCATCTGTGCGACGGCGCGTGTCCTGCACTAAATGCTTCGACGCTCTCTGGTTCTGCTAT 120
Query 121 TGGATGTCTAGATGGTCCAACATAACCAGCAATGGCGATGACACAGGAAAAGATTTGGCA 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 TGGATGTCTAGATGGTCCAACATAACCAGCAATGGCGATGACACAGGAAACGATTTGGCA 180
Query 181 CCGTTTTACCAAATGCAGCAGTATTACCGGGTTGGAAAACTTGATGATTGTACTAAGAAG 240
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCATTTTATCAAATGCAGCAGTATTACCGGGTTGGAAAACTTGATGATTGTACTAAGAAG 240
Query 241 TTCTCTGATCTCTTTGATTGTCTTTCCTTGAAGACAAAAATAGCTTCTGAAGTCGAGAAA 300
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 241 TTCTCTGACCTCTTTGATTGTCTTTCCTTGAAGACAAAAAGAGCTTCTGAAGCCGAGAGA 300
Query 301 ATTCTGGAAGAGCAAGAGAAAGCTGCTGCGGAAAAACATATTTGGGTTATGCGAACACAA 360
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 301 ATTCTGGAAGAGCAAGAGAAAGCTGCTGCGGAAAAACATATCTGGATTATGCGAACACAG 360
Query 361 GAAGAAGCTGTAAGTCATTGGAATGAGACTTTTGGGCATTTGGATGATCCAAATTCTTAG 420
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GAAGAAGCTGTAAGCCATTGGAATGAGACTTTTGGGCATTTGGAAGATCCAAATTCTTAG 420
Query 421 AAGGTACAGTTTCACGCTTTAGATTCTCTACTGCATTCTTGACGGAGATTTTTACTTCCA 480
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 421 AAGGTACAGTTTCACGCTTTGGATTCTCTGCTGCATTCTTGACGGAGATTTTTACTTCCA 480
Query 481 AGAAACTCGATGTCTGCTAGAGATCTACAGATTATTCTGCCGGATAGAGAAAGCTTTTTG 540
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 AGAAACTCGAGGTCTGCTAGAGATCTGCAGATTATTCTGCCGGATAGAGAAAGCTTTTTG 540
Query 541 TCATCGCTTACCATGAACATTTTGAGCAAACTTAAGTTATTCCTCAATCTCCAAAGAAGC 600
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 541 TCATCGCTTACCATGAACATTTTGAGCAAACTTAAGTTATACCTCAATCTCCAAAGAAGC 600
Query 601 GTACCTCGAAAGATGGAGGGATGTTTTGAGACCATTTATTGGACTGTGGATGTATTTGGT 660
|||||||||||||||| |||||||||||||| |||||||||||||| | |||||||||||
Sbjct 601 GTACCTCGAAAGATGGGGGGATGTTTTGAGATCATTTATTGGACTGAGAATGTATTTGGT 660
Query 661 TGAATGGTAACAACAGAAAATACATTGCTAAATAAAATCTCACATCTGTTTC 712
||| ||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 661 TGATTGGTAACAAAAAAAAATACATTGCTAAATAAAATCTCACATCTGTTTC 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34510858989
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5