BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492307
Length=2097
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25240.1 | Symbols: SKS1 | SKU5 similar 1 | chr4:12930402-12... 3094 0.0
AT5G51480.1 | Symbols: SKS2 | SKU5 similar 2 | chr5:20910244-2... 1611 0.0
AT5G48450.1 | Symbols: sks3 | SKU5 similar 3 | chr5:19632791-1... 71.3 4e-11
> AT4G25240.1 | Symbols: SKS1 | SKU5 similar 1 | chr4:12930402-12933892
FORWARD LENGTH=2236
Length=2236
Score = 3094 bits (1675), Expect = 0.0
Identities = 1946/2069 (94%), Gaps = 49/2069 (2%)
Strand=Plus/Plus
Query 1 GTAAGAAGAAATTCAAAAACCCACACTGACACTTTAACACATTGCTTCGTCTTCTCTACC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTAAGAAGAAATTCAAAAACCCACACTGACACTTTAACACATTGCTTCGTCTTCTCTACC 60
Query 61 GTTTCGA-TTCACTCATATAATGATTATGTCAAATCCGTAAGC-----T--T--T----- 105
||||||| ||||||| | | | |||||||||||||||||||| | | |
Sbjct 61 GTTTCGATTTCACTC-T-T-A--ATTATGTCAAATCCGTAAGCTTTTGTGATCATCAACA 115
Query 106 ----aaaaaaaaaCCTAACTTTATGGCGGCGACTTG-T-TCTG-T---G---TTCCTCCT 152
|||||||||||||||||||||||||||||||| | |||| | | || |||||
Sbjct 116 CCAAAAAAAAAAACCTAACTTTATGGCGGCGACTTGTTCTCTGCTCGCGTCCTTTCTCCT 175
Query 153 CTGCTTTGCTCTTCTCTCCGGCGTGTCTTTCGCGGCGGACCCTTTCGTCTCCTACGACTT 212
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 176 CTGCTTTGCTCTTCTCTCCGCCGTTTCTTTCGCGGCGGACCCTTTCGTCTCCTACGACTT 235
Query 213 CAGGGTTTCTTACATCACCGCTTCCCCCCTCGGCGTTCCTCAACAGGTTATAGCTGTCAA 272
||| ||||||||| |||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 236 CAGAGTTTCTTACCTCACTGCTTCTCCCCTCGGCGTTCCTCAACAGGTTATAGCCGTCAA 295
Query 273 TGGGCAGTTTCCAGGACCTCTGCTTAATGCCACTACCAACTACAATGTTGTTGTTAACGT 332
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 296 TGGGCAGTTTCCAGGACCTCTGCTTAATGCTACTACCAACTACAATGTTGTTGTTAACGT 355
Query 333 TTTCAATCATTTGGATGAGCCTCTCCTCTTGACTTGGCCTGGCATCCAAATGCGGCGTAA 392
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 356 TTTCAATCATTTGGATGAGCCTCTCCTCTTGACTTGGCCTGGTATCCAAATGCGGCGTAA 415
Query 393 CTCGTGGCAAGACGGTGTTCTTGGCACAAACTGCCCTATTCCTCCCAGATGGAACTTTAC 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CTCGTGGCAAGACGGTGTTCTTGGCACAAACTGCCCTATTCCTCCCAGATGGAACTTTAC 475
Query 453 TTACCAATTTCAAGTGAAGGATCAAATTGGAAGCTTTTTCTACTCCCCTTCACTCAACTT 512
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TTACCAATTTCAAGTCAAGGATCAAATTGGAAGCTTTTTCTACTCCCCTTCACTCAACTT 535
Query 513 TCAGAGAGCATCTGGGGGTTTTGGTCCCATCGTGATTAATAACCGTGACATTATTCCTAT 572
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 536 TCAGAGAGCATCTGGTGGTTTTGGTCCCATCGTGATTAATAACCGGGACATTATTCCTAT 595
Query 573 CCCTTTCCCACAGCCTGACGGCGAACTCATCTTCATTATTGGTGATTGGTACACTCAGGA 632
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 596 CCCTTTCCCACAGCCTGATGGTGAACTCATCTTCATTATTGGTGATTGGTACACTCAGGA 655
Query 633 CCATAAAGCATTAAGGAGAATACTCGACTCTGGGAAAGAACTTGGGATGCCAGATGGAGT 692
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 656 CCATAAAGCATTAAGGAGAGCACTTGACTCTGGGAAAGAACTTGGGATGCCAGATGGAGT 715
Query 693 CCTCATCAATGGGAAGGGTCCTTACAAGTACAACAGTAGTGTACCTGATGGAATTGATTA 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CCTCATCAATGGGAAGGGTCCTTACAAGTACAACAGTAGTGTACCTGATGGAATTGATTA 775
Query 753 CTTAACCTTTCATGTTGAGCCAGGGAAAACATACAGAATCCGTGTTCACAATGTTGGGAT 812
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 776 CTTAACCTTTCATGTTGAACCAGGGAAAACATACAGAATCCGTGTTCACAATGTTGGGAT 835
Query 813 CTCGACAAGCTTGAACTTCAGGATTCAGAACCACAATTTGCTTTTGGTAGAAACCGAGGG 872
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 836 CTCGACAAGCTTGAACTTCAGGATTCAGAACCACAGTTTGCTTTTGGTAGAAACCGAGGG 895
Query 873 TCACTATACCTCACAGGCGAACTTTACTGATTTTGATGTTCATGTAGGACAGTCTTATTC 932
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 896 TCACTATACTTCACAGGCGAACTTCACTGATTTTGATGTTCATGTAGGACAGTCTTATTC 955
Query 933 TTTCTTGGTAACCATGGACCAAAACGCCACAAGTGACTACTACATTGTTGCCAGTGCTAG 992
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 956 TTTCTTGGTAACCATGGACCAAGACGCCACAAGTGACTACTACATTGTTGCCAGTGCTAG 1015
Query 993 ATTTGTGAATGAAACAGTGTGGCAAAGAGTCACTGGTGTTGCCATTCTCCATTATTCTAA 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 ATTTGTGAATGAAACAGTGTGGCAAAGAGTCACTGGTGTTGCCATTCTCCATTATTCTAA 1075
Query 1053 TTCCAAAGGACCTGTTTCTGGTCCTCTACCAGTTCCAAAAACCGATGTTTCTAGCCCATG 1112
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 1076 TTCCAAAGGACCTGTTTCTGGTCCTCTACCAGTTCCCAAAACAGATGTTTCTAGCCCGTG 1135
Query 1113 GTCAGCAATGAACCAGCCGAAGGCCATCAGGCAAAACACATCTGCTAGTGGAGCTCGTCC 1172
||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1136 GTCAGCAATGAGCCAGCCGAAGACCATCAGGCAAAACACATCTGCCAGTGGAGCTCGTCC 1195
Query 1173 AAATCCGCAGGGATCATTTCACTATGGTCAAATAAACATCACTAACACATACATTTTGAG 1232
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1196 AAATCCGCAGGGATCATTTCATTATGGTCAAATAAACATCACTAACACATACATTTTGAG 1255
Query 1233 AAGTTTGCCTCCAACAACAATTAACGGGGCACTACGTGCTACACTTAATGGGATTTCATT 1292
||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1256 AAGTTTGCCTCCAACAATAATTAACGGGGCACTTCGTGCTACACTTAACGGGATCTCATT 1315
Query 1293 TGTGAATCCAAGCACTCCAGTGAGGCTTGCGGATCGCAATAAAGTGAAAGGAGCTTATAA 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TGTGAATCCAAGCACTCCAGTGAGGCTTGCGGATCGCAATAAAGTGAAAGGAGCTTATAA 1375
Query 1353 GCTGGACTTCCCTGATAGACCTTTTAGTAGACCTCCTCGTTTGGACAGATCTATGATCAA 1412
||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 1376 GCTGGACTTCCCTGACAGACCTTTTAATAGACCTCTTCGTTTGGATAGATCTATGATCAA 1435
Query 1413 CGCAACATACAAGGGCTTTATACAAGTTGTTTTCCAGAACAACGACACCAAGATCCAGAG 1472
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1436 CGCAACATACAAGGGCTTTATACAAGTTGTTTTCCAGAACAATGACACCAAGATCCAGAG 1495
Query 1473 CTTCCATGTTGATGGATATTCATTTTTTGTTGTTGGGATGGACTTTGGTATCTGGTCAGA 1532
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1496 CTTCCATGTTGATGGCTATTCATTTTTCGTTGTTGGGATGGACTTTGGTATTTGGTCAGA 1555
Query 1533 AGACAAAAAGGGTTCATATAACAACTATGATGCCATCTCAAGAAGCACAATCAAGGTATA 1592
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1556 AGACAAAAAGGGTTCATATAACAACTGGGATGCCATCTCAAGAAGCACAATCGAGGTATA 1615
Query 1593 CCCTGGGGGATGGACGGCTGTACTTATTTCCCTTGATAACGTTGGAGTTTGGAACATTCG 1652
||||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 1616 CCCTGGGGGTTGGACGGCTGTACTGATTTCCCTTGATAATGTCGGAGTTTGGAACATTCG 1675
Query 1653 AGTAGAGAATCTTGACAGATGGTATCTTGGTGAAGAAACTTATATGCGGATCACAAACCC 1712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 AGTAGAGAATCTTGACAGATGGTATCTTGGTGAAGAAACTTATATGCGGATCACAAACCC 1735
Query 1713 CGAAGAGGATGGAAAGACAGAGATGGATCCTCCTGACAATGTCCTTTACTGTGGTGCCCT 1772
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1736 CGAGGAGGATGGAAAGACAGAGATGGATCCTCCTGACAATGTCCTATACTGTGGTGCTCT 1795
Query 1773 TAAGAACTTGCAGAAGGAACAACACCACTCAGCTGCAACATCTATACTAAATGGACACTT 1832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 TAAGAACTTGCAGAAGGAACAACACCACTCAGCTGCAACATCTATACTAAATGGACACTT 1855
Query 1833 GAAGCTAATGCTAATA--G-TGTTACTCGCCTCGGT-TATGACATTTTGCTAAGCCTTTT 1888
||||||||||||| || | |||| ||||||||||| | | | |||||||| ||| ||||
Sbjct 1856 GAAGCTAATGCTACTAATGGTGTTGCTCGCCTCGGTGT-TCAGATTTTGCTGAGCATTTT 1914
Query 1889 TACATCTTTCTGCCGGG-GAAGTGAGGTA-GTAGACGTTAAATGATATTTAGATTTATTT 1946
||||||||| || | || ||| | || || |||||||||| |||||||||||||
Sbjct 1915 TACATCTTTATGTTGATCGACCC-AGGGAAGT-GAAGTTAAATGATTTTTAGATTTATTT 1972
Query 1947 ATCCCCATGGGCCATGGATGTGAACAACTCTTGGTTCTTTTGTTGTTTTAGGCCAAAATG 2006
||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1973 ATCCC-A------ATGGATGTGAAAAACTCTTGGTTCTTTCGTTGTTTTAGGCCAAAATG 2025
Query 2007 GTTTAGCATCTTCTCAATTGTAATGAAAA 2035
|||||| ||||| |||||||||||| |||
Sbjct 2026 GTTTAGAATCTTGTCAATTGTAATGGAAA 2054
> AT5G51480.1 | Symbols: SKS2 | SKU5 similar 2 | chr5:20910244-20913451
FORWARD LENGTH=2266
Length=2266
Score = 1611 bits (872), Expect = 0.0
Identities = 1446/1722 (84%), Gaps = 44/1722 (3%)
Strand=Plus/Plus
Query 145 TTCCTCCTCTGCTTT-GCTCTTCTCTCCGGCGTGTCTTTCGC-GGCGGACCCTTTCGTCT 202
||| || ||| |||| |||||| ||| |||| | |||||||| || || |||| |||||
Sbjct 217 TTCGTCTTCT-CTTTCGCTCTTATCTTCGGCTTCTCTTTCGCTGG-TGATCCTTACGTCT 274
Query 203 CCTACGACTTCAGGGTTTCTTACATCACCGCTTCCCCCCTCGGCGTTCCTCAACAGGTTA 262
| ||||| |||| | || |||||||| ||||| || ||||| ||||||||||||||||
Sbjct 275 CTTACGATTTCACCCTCTCCTACATCACTGCTTCTCCTCTCGGTGTTCCTCAACAGGTTA 334
Query 263 TAGCTGTCAATGGGCAGTTTCCAGGACCTCTGCTTAATGCCACTACCAACTACAATGTTG 322
|||| ||||||||| | |||||||| ||| || |||| || || || ||||||||||||
Sbjct 335 TAGCAGTCAATGGGAAATTTCCAGGTCCTGTGATTAACGCTACGACAAACTACAATGTTC 394
Query 323 TTGTTAACGTTTTCAATCATTTGGATGAGCCTCTCCT-CTTGACTTGGCCTGGCATCCAA 381
||||||||| |||||||||||||||||||||| | ||| ||||||||||| | ||
Sbjct 395 ATGTTAACGTACTCAATCATTTGGATGAGCCTCTTTTACTT-ACTTGGCCTGGTGTTCAG 453
Query 382 ATGCGGCGTAACTCGTGGCAAGACGGTGTTCTTGGCACAAACTGCCCTATTCCTCCCAGA 441
||| ||||||||||||||||||||||||||||||| |||||||| || ||||| || | |
Sbjct 454 ATGAGGCGTAACTCGTGGCAAGACGGTGTTCTTGGAACAAACTGTCCAATTCCACCGA-A 512
Query 442 -TGGAACTTTACTTACCAATTTCAAG-TGAAGGATCAAATTGGAAGCTT-TTTCTACTCC 498
|||||||| ||||| | |||| || |||| ||||| |||||||| || |||||||||
Sbjct 513 TTGGAACTTCACTTATGATTTTC-AGTTGAAAGATCAGATTGGAAG-TTATTTCTACTCT 570
Query 499 CCTTCACTCAACTTTCAGAGAGCATCTGGGGGTTTTGGTCCCA-TCGTGATTAATAACCG 557
|||||||| |||||||||||||| ||||| ||||||||| || || | || |||||| |
Sbjct 571 CCTTCACTTAACTTTCAGAGAGCCTCTGGTGGTTTTGGT-GCACTCATAATCAATAACAG 629
Query 558 TGACATTATTCCTATCCCTTTCCCACAGCCTGACGGCGAACTCATCTTCATTATTGGTGA 617
||| || ||||||| || ||| | ||||||| || ||| ||||||| |||||||||||
Sbjct 630 AGACCTTGTTCCTATTCCGTTCACTGAGCCTGATGGTGAAATCATCTTTATTATTGGTGA 689
Query 618 TTGGTACACTCAGGACCATAAAGCATTAAGGAGAATACTCGACTCTGGGAAAGAACTTGG 677
|||||| |||||| |||||| ||| |||||||| ||||| |||||||| |||||||||||
Sbjct 690 TTGGTATACTCAGAACCATACAGCTTTAAGGAGGATACTTGACTCTGGTAAAGAACTTGG 749
Query 678 GATGCCAGATGGAGTCCTCATCAATGGGAAGGGTCCTTACAAGTACAACAGTAGTGTACC 737
|||||| |||||||| |||||||||||||| ||||||| ||||||||| || ||||||||
Sbjct 750 GATGCCCGATGGAGTACTCATCAATGGGAAAGGTCCTTTCAAGTACAATAGCAGTGTACC 809
Query 738 TGATGGAATTGATTAC-T-TAACCTTTCATGTTGAGCCAGGGAAAACATACAGAATCCGT 795
|||||||||||| || | |||| || ||||||| ||||||||||||||||| ||||||
Sbjct 810 TGATGGAATTGA--ACATGAAACCGTTAATGTTGATCCAGGGAAAACATACAGGATCCGT 867
Query 796 GTTCACAATGTTGGGATCTCGACAAGCTTGAACTTCAGGATTCAGAACCACAATTTGCTT 855
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 868 GTTCACAATGTTGGTATCTCGACAAGCTTGAACTTCAGGATTCAGAACCACAAATTGCTC 927
Query 856 TTGGTAGAAACCGAGGGTCACTATACCTCACAGGCGAACTTTACTGATTTTGATGTTCAT 915
||| | || || ||||||| ||| ||||| || |||||| || |||||||||||||||
Sbjct 928 TTGATTGAGACTGAGGGTCGCTACACCTCCCAAATGAACTTCACCGATTTTGATGTTCAT 987
Query 916 GTAGGACAGTCTTATTCTTTCTTGGTAACCATGGACCAAAACGCCACAAGTGACTACTAC 975
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 988 GTGGGACAGTCTTATTCTTTCCTGGTAACCATGGACCAAAACGCCACAAGTGACTACTAC 1047
Query 976 ATTGTTGCCAGTGCTAGATTTGTGAATGAAACAGTGTGGCAAAGAGTCACTGGTGTTGCC 1035
||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||| |
Sbjct 1048 ATTGTGGCGAGTGCTAGATTTGTTAATGAAACAGTGTGGCAAAGAGTCACAGGTGTTGGC 1107
Query 1036 ATTCTCCATTATTCTAATTCCAAAGGACCTGTTTCTGGTCCTCTACCAGTTCCAAAAACC 1095
|||||||||||||| |||||||||||||||| |||||||||| | |||||| || |||
Sbjct 1108 ATTCTCCATTATTCCAATTCCAAAGGACCTGCTTCTGGTCCTTTGCCAGTTTCAGCAACT 1167
Query 1096 GATGTT--TCTAGCCCATGGTCAGCAATGAACCAGCCGA-AGGCCATCAGGCAAAACACA 1152
|||||| || | ||| ||||| ||||||||||| |||| || |||| | ||||||||||
Sbjct 1168 GATGTTAATC-A-CCCTTGGTCTGCAATGAACCAACCGAGAG-CCATAAAGCAAAACACA 1224
Query 1153 TCTGCTAGTGGAGCTCGTCCAAATCCGCAGGGATCATTTCACTATGGTCAAATAAACATC 1212
||||| |||||||||||||||||||||||||||||||||||||| || || || |||||
Sbjct 1225 TCTGCAAGTGGAGCTCGTCCAAATCCGCAGGGATCATTTCACTACGGACAGATCAACATT 1284
Query 1213 ACTAACA-CATACATTTTGAGAAGTTTGCCTCCAACAACAATTAACGGGGCACTACGTGC 1271
|| || | ||||||| ||||| |||||||||||||||| ||| || ||| ||| |||||
Sbjct 1285 AC-AAGAACATACATCTTGAGGAGTTTGCCTCCAACAAAAATCAATGGGAAACTTCGTGC 1343
Query 1272 TACACTTAATGGGATTTCATTTGTGAATCCAAGCACTCC-AGTGAGGCTTGCGGATCG-C 1329
|||||||||||| ||||||||||| ||||||||||| || | |||||||||||||| | |
Sbjct 1344 TACACTTAATGGAATTTCATTTGTCAATCCAAGCACCCCCA-TGAGGCTTGCGGAT-GAC 1401
Query 1330 AATAAAGTGAAAGGAGCTTATAAGCTGGACTTCCCTGATAGACCTTTT-A-GTAGACCT- 1386
||||||||||||||| ||||| | | || || || || ||||| || | | | | ||
Sbjct 1402 CATAAAGTGAAAGGAGATTATATGTTAGATTTTCCAGACAGACCACTTGATGAAAAACTT 1461
Query 1387 CCTCGTTTGGACAGATCTATGATCAACGCAACATACAAGGGCTTTATACAAGTTGTTTTC 1446
|| |||||| ||| ||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 1462 CCACGTTTGTCCAGCTCTATCATCAACGCAACATACAAGGGCTTTATACAAGTTATCTTC 1521
Query 1447 CAGAACAACGACACCAAGATCCAGAGCTTCCATGTTGATGGATATTCATTTTTTGTTGTT 1506
|||||||| |||||||| ||||||||||||||| ||||||||||| |||||| || |||
Sbjct 1522 CAGAACAATGACACCAAAATCCAGAGCTTCCATATTGATGGATATGCATTTTACGTGGTT 1581
Query 1507 GGGATGGACTTTGGTATCTGGTCAGAAGACAAAAAGGGTTCATATAACAACTATGATGCC 1566
| ||||||||||||||| ||||||||||||| ||| |||| |||||||||| |||||
Sbjct 1582 GCGATGGACTTTGGTATATGGTCAGAAGACAGAAACAGTTCTTATAACAACTGGGATGC- 1640
Query 1567 A-TCTCAAGAAGCACAATCAAGGTATACCCTGGGGGATGGACGGCTGTACTTATTTCCCT 1625
| | || ||||||| | |||| || || || | |||||| |||||||||||||| ||
Sbjct 1641 AGTAGCACGAAGCACGGTGGAGGTCTATCCAGGAGCATGGACTGCTGTACTTATTTCTCT 1700
Query 1626 TGATAACGTTGGAGTTTGGAACATTCGAGTAGAGAATCTTGACAGATGGTATCTTGGTGA 1685
||||| |||||||||||||| || || || |||||||||||||||||||||||||| |
Sbjct 1701 CGATAATGTTGGAGTTTGGAATATCCGGGTTGAGAATCTTGACAGATGGTATCTTGGCCA 1760
Query 1686 AGAAACTTATATGCGGATCACAAACCCCGAAGAGGATGGAAAG-ACAGAGATGGATCCTC 1744
|||||| || ||||| || | |||||| || || | |||| | || || |||||||| |
Sbjct 1761 AGAAACATACATGCGAATTATAAACCCTGAGGAAAACGGAA-GTACGGAAATGGATCCGC 1819
Query 1745 CTGACAATGTCCTTTACTGTGGTGCCCTTAAGAACTTGCAGAAGGAACAACA-C-CA-CT 1801
|||| ||||| | || |||||||| ||| || | |||| ||||||||||| | || ||
Sbjct 1820 CTGAAAATGTTATGTATTGTGGTGCTCTTCAGGCCATGCAAAAGGAACAACATCACAGCT 1879
Query 1802 CAGCTGCAACATCTAT-ACTAAATGGACACTTGA-AGCTAAT 1841
| || ||| ||| || || ||||||||| |||| | |||||
Sbjct 1880 CGGCCACAAAATCAATGAC-AAATGGACAGTTGATA-CTAAT 1919
> AT5G48450.1 | Symbols: sks3 | SKU5 similar 3 | chr5:19632791-19635664
REVERSE LENGTH=1918
Length=1918
Score = 71.3 bits (38), Expect = 4e-11
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 1469 AGAGCTTCCATGTT-GATGGATATTCATTTTTTGTTGTTGGGATGGACTTTGGTATCTGG 1527
|||||| ||| || ||||| ||| ||||||||||||||||||||||||||||| | |||
Sbjct 1380 AGAGCTACCA-CTTGGATGGTTATGCATTTTTTGTTGTTGGGATGGACTTTGGTCTGTGG 1438
Query 1528 TCAGAA 1533
|||||
Sbjct 1439 ACAGAA 1444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103965328695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5