BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492309
Length=2322
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25230.1 | Symbols: RIN2 | RPM1 interacting protein 2 | chr4... 3770 0.0
AT5G51450.2 | Symbols: RIN3 | RPM1 interacting protein 3 | chr5... 1404 0.0
> AT4G25230.1 | Symbols: RIN2 | RPM1 interacting protein 2 | chr4:12924059-12929156
FORWARD LENGTH=2609
Length=2609
Score = 3770 bits (2041), Expect = 0.0
Identities = 2206/2285 (97%), Gaps = 14/2285 (1%)
Strand=Plus/Plus
Query 42 CAGATGGCGTCATGCTAATATGACTAAATGAGATTCTGGGGATTAAGTTTAAGTGGGAAG 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 CAGATGGCGTCATGCTAATATGACTAAATGAGATTCTGGGGATTAAGTTTAAGTGGGAAG 371
Query 102 GCTGTTATTGTTCCTAATGGGGATAAAGTACTTG-CCGCTCTCCGTAGCATCAACAGCTC 160
||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 372 GCTGTAATAGTTCCTAATGGGGATAAAGTACTTGCCCG-TCTCCGTAGCATCAACAGCTC 430
Query 161 TCAGCTTTGTTGGACTTCAAGTCTGGACAGAGTTTTCTCTCGATAGACTTCGAGCTGATG 220
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 431 TCAGCTTTGTTGGACTTCAAGTCTGGACAGAGTTGTCTCTCGATAGACTTCGAGCAGATG 490
Query 221 GGCTGATTGCCAAGAACGTTTCTTTAGGAGACTCCGAGCATGCGCTTGAGCTGCTTCTCG 280
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
Sbjct 491 GGCTGATTGCCAAGAACATTTCTTTAGGAGACTCTGAGCATGCGCTTGAGCTGCTTCTGG 550
Query 281 GCTCTTATTTCACTATTGCGCTGCTCACAAATTTTGTGCTCAATGTGTATATTCTTCTGC 340
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 551 GCTCTTATTTCACTATTGCGCTGCTTACAAATTTTGTGCTCAATGTGTATATTCTTCTGG 610
Query 341 TACTTTCTCTCAAGACTCTATTTTTTGGAGATTTATATGACGTTGAAACTAAAAAGTTGG 400
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 611 TACTTTCTCTCAAGACTCTATTTTTTGGAGATTTATATGATGTTGAAACCAAAAAGTTGG 670
Query 401 TGGAGCGACTTGCCAATTATATCATATACAAGGGTACGTTTCTACCACTGGTGATTCCCC 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TGGAGCGACTTGCCAATTATATCATATACAAGGGTACGTTTCTACCACTGGTGATTCCCC 730
Query 461 CAACAATATTTCAGGGTGTACTGTGGACAGTTTGGTTGACTGTTCTATGTACTTTAAAGA 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 CAACAATATTTCAGGGTGTACTGTGGACAGTTTGGTTGACTGTTCTATGTACTTTAAAGA 790
Query 521 TGTTTCAAGCTTTGGCTAGAGACCGGCTTGAACGATTGAATGCATCTCCTTCTTCTACAC 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TGTTTCAAGCTTTGGCTAGAGACCGGCTTGAACGATTGAATGCATCTCCTTCTTCTACAC 850
Query 581 CTTGGACATACTTTCGTGTGTATTCAGTGCTGTTCTTGGTCCTCTCTGTTGATATGTTCT 640
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 851 CTTGGACATACTTTCGTGTGTATTCAGTGCTATTCTTGGTCCTCTCTGTTGATATGTTCT 910
Query 641 GGATAAAACTTTCCCTTATGACATACAATACAATTGGTTCCTCTGTGTATCTGTTGTTAC 700
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 911 GGATAAAACTTTCCCTTATGACATACAATACAATTGGTTCCGCTGTGTATCTGTTGTTAC 970
Query 701 TTTTTGAGCCATGCAGTATAGCTTTTGAGACCTTGCAGGCGCTGTTAATTCATGGGTTTC 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 TTTTTGAGCCATGCAGTATAGCTTTTGAGACCTTGCAGGCGCTGTTAATTCATGGGTTTC 1030
Query 761 AGCTGCTAGATATGTGGATTAACCACTTAGCAGTTCAGAACTCAGACTGCCAAAGATCTA 820
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1031 AGCTGCTAGATATGTGGATTAACCACTTAGCAGTTAAGAACTCAGACTGCCAAAGATCTA 1090
Query 821 AGTTTATCGATTCCATGACAGCAGGCTCACTGTTGGAATGGAAGGGCCTCCTCAACCGTA 880
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1091 AGTTTATTGATTCTATGACAGCAGGCTCACTGTTGGAATGGAAAGGCCTCCTCAACCGTA 1150
Query 881 ATCTTGGTTTCTTCCTGGACATGGCTACTTTGGTAATGGCACTAGGTCATTATTTGCACA 940
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 ACCTTGGTTTCTTCCTGGACATGGCTACTTTGGTAATGGCACTAGGTCATTATTTGCACA 1210
Query 941 TTTGGTGGCTGCACGGCATTGCCTTTCATCTGGTGGATGCAGTTTTGTTTCTCAACATAC 1000
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 TTTGGTGGCTGCATGGCATTGCCTTTCATCTGGTGGATGCAGTTTTGTTTCTCAACATAC 1270
Query 1001 GTGCATTGCTAAGTGCAATTTTGAAACGAATAAAAGGATACATTAAACTAAGAATAGCTC 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 GTGCATTGCTAAGTGCAATTTTGAAACGAATAAAAGGATACATTAAACTAAGAATAGCTC 1330
Query 1061 TGGGTGCTCTCCATGCAGCCCTCCCCGATGCAACTTCTGAAGAGTTAAGGGCATATGATG 1120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1331 TGGGTGCTCTCCATGCAGCCCTCCCTGATGCAACTTCTGAAGAGTTAAGGGCATATGATG 1390
Query 1121 ATGAATGTGCTATATGTCGGGAACCTATGGCCAAGGCTAAAAGGCTTCACTGCAACCACC 1180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1391 ATGAATGTGCTATATGTCGGGAACCTATGGCTAAGGCTAAAAGGCTTCACTGCAACCACC 1450
Query 1181 TTTTCCATCTTGGATGCCTGCGATCCTGGTTGGATCAAGGTTTAAATGAGGTTTATTCTT 1240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1451 TTTTCCATCTTGGATGCCTGCGATCCTGGTTGGATCAAGGTCTAAATGAGGTTTATTCTT 1510
Query 1241 GTCCTACATGTCGTAAGCCTCTTTTTGTTGGTAGAACTGAAAGTGAGGTGAACCCTCACA 1300
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||
Sbjct 1511 GTCCTACATGTCGTAAGCCTCTTTTCGTTGGTAGAACTGAAAATGAGGTGAACCCTCGCA 1570
Query 1301 CAGTGGAAGTCTCAAGCGATGAGCAGTTAGCCCGTCAGCTTGAAAGACAAAACAATCCTG 1360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1571 CAGTGGAAGTCTCAAGTGATGAGCAGTTAGCCCGTCAGCTTGAAAGACAAAACAATCCTG 1630
Query 1361 TACATGCACTAGCAACTGGTTTATTTCCTGCAGAGGTGCCAAATTCCGTCGAAAATGATA 1420
||||||||||||| ||||| ||||||||||| ||||||||| |||| |||||||||||||
Sbjct 1631 TACATGCACTAGCCACTGGATTATTTCCTGCTGAGGTGCCAGATTCTGTCGAAAATGATA 1690
Query 1421 CTTCGAGGAATTTAGGATTGGATCCAAGCTGGCTGCAGACATGGTCAGGTCAGGGTTCTG 1480
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1691 CTTCGAGGAATTTAGGATTGGATCCAAGTTGGCTGCAGACATGGTCAAGTCAGGGTTCTG 1750
Query 1481 ATGTCGCTGGTCCCTCTACCGCTTCCAGGTCAGTTGGACTGGGGCGGGTTCAGATGATGA 1540
||||||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||
Sbjct 1751 ATGTCGCTGGTCCTTCTACCACTTCCAGGACAGTTGGACTTGGGCGGGTTCAGATGATGA 1810
Query 1541 TGAGGCATCTTGCATCTGTTGGCGAAAGCTATGCTCAAACTGCACTTGACGATGCTGCTT 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1811 TGAGGCATCTTGCATCTGTTGGCGAAAGCTATGCTCAAACTGCACTTGACGATGCTGCTT 1870
Query 1601 GGAGTCTATGGCCGATGAACCCTTCACAAGCATCCACTTCTTCTACAACTGTACCTCCTG 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1871 GGAGTCTATGGCCGATGAACCCTTCACAAGCATCCACTTCTTCTACAACTGTACCTCCTG 1930
Query 1661 GTACTGGTGGAAGGACAGGTGGTCTGCATCTGAGAACTGTATCAAGCACGACAGATGAAA 1720
||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1931 GTAATGGTGGAAGGACAGGTGGTCTGCATCTGAGAACTGTATCAAACACGACAAATGAAA 1990
Query 1721 GCTTGGCAAATATACTAGCTATGGCCGAGACTGTGAGGGAAGTCATGCCACACGTGCCCG 1780
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1991 GCTTAACAAATATACTAGCTATGGCCGAGACAGTGAGGGAAGTCATGCCACACGTGCCCG 2050
Query 1781 ATGAAATTATTTTCCAGGACCTGCAGAGAACAAACTCTGTTGCTGTTACAGTGAACAATC 1840
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2051 ATGAAATTATTTTCCAGGACCTGCAGAGAACAAACTCTGTTGCTGTTACCGTGAACAATC 2110
Query 1841 TTCTCCAGATGTGATGATAGTTTGTGTAATATATACTAAGCACTTGCATTTCAACCTTAG 1900
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 2111 TTCTCCAGATGTGATGATAGTTTGTGTAAAATATACTAAGCACTTCCATTTCAACCTTAG 2170
Query 1901 GTATAGATTAATGATTGGGGACATATCCTTGTCCTTAAGTCTTTACACACCACCCAACAT 1960
|||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct 2171 GTATAGATTAATGATTGGGGACATATCCTTATCCGTAAGT-TTTACACACCACCCAACAT 2229
Query 1961 TCCAAGCTTCACCCGCTGTAAATATAAGGCAATGTGCATCACTTTTTGCTATAGAGAAGA 2020
|||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||
Sbjct 2230 TCCAAGCTTCACCCGCTGTAGATATAAGGCACTGTGTATCACTTTTTGCTATAGAGAAGA 2289
Query 2021 AGAGGCTCTAGTGTATAGCTTCTGTTCATTGCTCTCTTGCGAAAAATAAGTTCGGATATT 2080
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2290 AGAGGCTCTAGTGTATAGCTTCTGTTCATTGCTCTCTTGCGAAAA-TAAGTTCGGATATT 2348
Query 2081 TAC-TCAAGGTGATGATGATGCCTTGGTGGTCTGGAGATATCTTTGTCGCAGTCTGACCT 2139
||| | |||||||||||| ||| ||||||||||||||||||| || ||||||||||||
Sbjct 2349 TACAT-AAGGTGATGATGC--CCT-GGTGGTCTGGAGATATCTT-GTTGCAGTCTGACCT 2403
Query 2140 CGGCTCCAGTCTCGAGGGAGAGTAACCACTCTTTGCAGCTGCTCTTTTGGCTGCTGCTAT 2199
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2404 TGGCTCCAATCTCGAGGGAGAGTAACCACTCTTTGCAGCTGCTCTTTTGGCTGCTGCCAC 2463
Query 2200 CTCTCCTGTATAAGAATGTGTAATTTACAATAAA-ATGAA-GAAGTAAATTAAAGAATCT 2257
|||||||||||||||||||||||||||||||||| | || ||||||||| ||||| |||
Sbjct 2464 CTCTCCTGTATAAGAATGTGTAATTTACAATAAAGAAAAAAGAAGTAAATGAAAGAGTCT 2523
Query 2258 ACTGTTATTGATCAAATAGCCTGTACTGTAGTATATCACCAAATGTGTAAACTCAAtttt 2317
||||||||||||| ||||||||||| |||||||| || ||||||||| |||||||||||
Sbjct 2524 ACTGTTATTGATCCAATAGCCTGTAATGTAGTAT--CATCAAATGTGTGAACTCAATTTT 2581
Query 2318 ttttt 2322
|||||
Sbjct 2582 TTTTT 2586
> AT5G51450.2 | Symbols: RIN3 | RPM1 interacting protein 3 | chr5:20892643-20897817
FORWARD LENGTH=2603
Length=2603
Score = 1404 bits (760), Expect = 0.0
Identities = 1180/1382 (85%), Gaps = 31/1382 (2%)
Strand=Plus/Plus
Query 61 ATGACTAAATGAGATTCTG-GGGATTAAGTT-TAAGTGGGAAGGCTGTTATTGTTCCTAA 118
||| |||||||||| |||| ||| |||| || |||| ||||||| | || ||| ||||
Sbjct 166 ATG-CTAAATGAGAATCTGTGGG-TTAA-TTCGGAGTGAGAAGGCTATAATAGTTTCTAA 222
Query 119 TGGGGATAA-AGTACTTGCCGC-TCTCCGTAGCATCAACAGCTCTCAGCTTTGTTGGACT 176
||||||||| | || ||| | | | ||||| ||| |||||||| | ||||||| ||| |
Sbjct 223 TGGGGATAACA-TATTTG-CACATTTCCGTGGCAACAACAGCTTTGAGCTTTG-TGGGTT 279
Query 177 T-CAAGTCTGGACAGAGTTTTCTCTCGATAGACTTCGAGCTGATGGGCTGATTGCCAAGA 235
| ||||||||||| ||||| ||||| ||||||||| ||||||||||| | || ||||||
Sbjct 280 TACAAGTCTGGACGGAGTTGTCTCTTGATAGACTTAGAGCTGATGGGATAATCACCAAGA 339
Query 236 ACGTTTCTTTA-GGAGACTCCGAGCATGCGCTTGAGCTGCTTCTCG-GCTCTTATTTC-A 292
|| |||||||| ||| | || ||| || | |||||||| ||||| | | ||| | | |
Sbjct 340 ACATTTCTTTAGGGA-ATTCTGAGAATACCCTTGAGCTTCTTCT-GAGTTCTCA-CACTA 396
Query 293 CTATTGCGCTGCTCACAAATTTTGTGCTCAATGTGTATATTCTTC-TGCTACTTTCTCTC 351
| ||||| |||| ||| |||||| |||||| | || ||||||| || | |||||||||
Sbjct 397 CAATTGCATTGCTGGCAAGTTTTGTTCTCAATATCTACATTCTTCTTG-TTCTTTCTCTC 455
Query 352 AAGACTCTATTTTTTGGAGATTTATATGACGTTGAAACTA-AAAAGTTGGTGGAGCGACT 410
|||||||| |||||||||||| |||||| | ||||||||| |||| ||||||| | ||
Sbjct 456 AAGACTCTGTTTTTTGGAGATCTATATGCCATTGAAACTAGAAAA-CTGGTGGAAAGGCT 514
Query 411 TGCCAATTATATCATATACAAGGGTACGTTTCTACCACTGGTGATTCCCCCAACAATATT 470
||||||||| ||||| |||||||| || ||||| ||| | ||| |||| | |||| ||||
Sbjct 515 TGCCAATTACATCATTTACAAGGGCACTTTTCTGCCATTCGTGGTTCCACGAACAGTATT 574
Query 471 TCAGGGTGTACTGTGGACAGTTTGGTTGACTGTTCTATGTACTTTAAAGATGTTTCAAGC 530
|||||| || || |||||| | |||||||||||||| |||||| ||||||||||||||||
Sbjct 575 TCAGGGGGTCCTATGGACAATCTGGTTGACTGTTCTGTGTACTCTAAAGATGTTTCAAGC 634
Query 531 TTTGGCTAGAGACCGGCTTGAACGATTGAATGCATCTCCTTCTTCTACACCTTGGACATA 590
|||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 635 TTTGGCTAGAGATCGGCTTGATCGATTGAATGCATCTCCTTCTTCGACTCCTTGGACATA 694
Query 591 CTTTCGTGTGTATTCAGTGCTGTTCTTGGTCCTCTCTGTTGATATGTTCTGGATAAAACT 650
||||||||||||||||| |||||| |||| |||||| |||| ||| ||||||||| ||
Sbjct 695 CTTTCGTGTGTATTCAGCACTGTTCATGGTTCTCTCTACTGATTTGTGCTGGATAAAGCT 754
Query 651 TTCCCTTATGACATACAATACAATTGGTTCCTCTGTGTATCTGTTGTTACTTTTTGAGCC 710
||||||||||| |||||||||| ||||||| ||||| ||| | ||||||||||||||||
Sbjct 755 TTCCCTTATGATATACAATACAGTTGGTTCGTCTGTCTATTTACTGTTACTTTTTGAGCC 814
Query 711 ATGCAGTATAGCTTTTGAGACCTTGCAGGCGCTGTTAATTCATGGGTTTCAGCTGCTAGA 770
|||| |||||||||||||||||||||||||| |||| ||||| |||||||| ||||| ||
Sbjct 815 ATGCGGTATAGCTTTTGAGACCTTGCAGGCGTTGTTGATTCACGGGTTTCAACTGCTTGA 874
Query 771 TATGTGGATTAACCACTTAGCAGTTC-AGAACTCAGACTGCCAAAGATCTAAG-TTTATC 828
||||||||| ||||||||||||| || |||| ||||| ||||| ||||| ||| |||||
Sbjct 875 TATGTGGATCAACCACTTAGCAG-TCAAGAATTCAGATTGCCAGAGATCAAAGTTTTAT- 932
Query 829 GATTCCATGACAGCAGGCTCACTGTTGGAATGGAAGGGCCTCCTCAACCGTAATCTTGGT 888
|||||||||||||||||||| | ||||||||||| |||||||||||||| |||||||||
Sbjct 933 GATTCCATGACAGCAGGCTCGTTATTGGAATGGAAAGGCCTCCTCAACCGAAATCTTGGT 992
Query 889 TTCTTCCTGGACATGGCTACTTTGGTAATGGCACTAGGTCATTATTTGCACATTTGGTGG 948
|||||||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||||
Sbjct 993 TTCTTCCTAGACATGGCTACCTTGGTAATGGCCCTCGGTCATTATTTGCACATCTGGTGG 1052
Query 949 CTGCACGGCATTGCCTTTCATCTGGTGGATGCAGTTTTGTTTCTCAACATACGTGCATTG 1008
|| || || || ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1053 CTCCATGGAATGGCCTTCCATCTGGTGGATGCAGTTTTGTTTCTCAACATACGTGCCTTG 1112
Query 1009 CTAAGTGCAATTTTGAAACGAATAAAAGGATACATTAAACTAAGAATAGCTCTGGGTGCT 1068
|||||| |||||||||||||||||||||||||||| ||||| ||| ||||| | ||||||
Sbjct 1113 CTAAGTTCAATTTTGAAACGAATAAAAGGATACATCAAACTGAGAGTAGCTTTAGGTGCT 1172
Query 1069 CTCCATGCAGCCCTCCCCGATGCAACTTCTGAAGAGTTAAGGGCAT-ATGATGATGAATG 1127
|| |||||||| || | ||||||||||| |||||| || ||| || ||||||| |||||
Sbjct 1173 CTTCATGCAGCTCTTCTTGATGCAACTTCAGAAGAGCTACGGG-ATTATGATGACGAATG 1231
Query 1128 TGCTATATGTCGGGAACCTATGGCCAAGGCTAAAAGGCTTCACTGCAACCACCTTTTCCA 1187
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1232 TGCTATATGTCGGGAACCAATGGCTAAGGCTAAAAGACTTCACTGCAACCACCTTTTTCA 1291
Query 1188 TCTTGGATGCCTGCGATCCTGGTTGGATCAAGGTTTAAATGAGGTTTATTCTTGTCCTAC 1247
|||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1292 TCTTGGCTGCCTACGATCATGGTTGGATCAAGGTTTAAATGAGGTTTACTCTTGTCCTAC 1351
Query 1248 ATGTCGTAAGCCTCTTTTTGTTGGTAGAACTGAAAGTGAGGTGAACCCTCA-CACAGTG- 1305
|| ||||||||||||||||||||||||||||||||||||| ||| ||| | || || |
Sbjct 1352 TTGCCGTAAGCCTCTTTTTGTTGGTAGAACTGAAAGTGAGGCGAATCCT-AGCAGAG-GA 1409
Query 1306 GAAGTCTCAAGCGATGAGCAGTTAGCCCGTCAGCTTGAAAGACAAAACAATCCTGTACAT 1365
||||||||||||||||| || ||||||||||| |||| |||||||||||| |||| |||
Sbjct 1410 GAAGTCTCAAGCGATGAACACTTAGCCCGTCAATTTGAGAGACAAAACAATTCTGTGCAT 1469
Query 1366 GCACTAGCAACTGGTTTATTTCCTGCAGAGGTGCCAAATTCCGTCGAAAATGATACTTCG 1425
|||||| | ||||| | ||||| | ||| |||||||| | ||||| |||| ||| |
Sbjct 1470 GCACTAACCACTGGAATGTTTCCAACTGAGACGCCAAATTTCACCGAAAGTGATCCTTGG 1529
Query 1426 AG 1427
||
Sbjct 1530 AG 1531
Score = 411 bits (222), Expect = 2e-113
Identities = 522/660 (79%), Gaps = 48/660 (7%)
Strand=Plus/Plus
Query 1426 AGGAATTTAGGA-TTGGATCCAAGCTGGCTGCAGACATGGTCAGGTCAGGGT-TCTGATG 1483
||||||| | || ||||||||||||||||||| |||||||||| ||||||| | |||||
Sbjct 1584 AGGAATTCA-GAGGTGGATCCAAGCTGGCTGCAAACATGGTCAGATCAGGGTGT-TGATG 1641
Query 1484 TCGCT-GGTCCCTCTAC-CGCTTCCAGGTCAGTTGGACTGGGGCGGGTTCAGA-TGATGA 1540
| | | ||| ||||| | || ||||| || ||||| ||||||| |||||| | ||||||
Sbjct 1642 TTG-TGGGTTCCTCTGCAGGC-TCCAGATCCGTTGGGCTGGGGCAGGTTCA-ATTGATGA 1698
Query 1541 TGAGGCATCTTGCATCTGTTGGCGAAAGCTATGCTCAAACTGCACTTGACGATGCTGCTT 1600
||||||||||||||||||| || ||| | | |||||| ||| |||||||||||||| |||
Sbjct 1699 TGAGGCATCTTGCATCTGTAGGGGAAGGTTCTGCTCAGACTACACTTGACGATGCTTCTT 1758
Query 1601 GGAGTCTATGGCCGATGAACCCTTCACAAGCATCCACTTCTTCTACA-ACTGTACCTCCT 1659
|| |||| ||||| ||||| ||||| |||||||| ||||| |||||| | ||| ||||||
Sbjct 1759 GGGGTCTCTGGCCAATGAATCCTTCGCAAGCATCGACTTCATCTACATA-TGTTCCTCCT 1817
Query 1660 GGTACTGGTGGAAGGACAGGTGGTCTGCATCTGAGAACTGTAT--CAAGCACGACAGATG 1717
||| |||| ||||| ||||||||||||||||| |||||||| | | ||| | || ||
Sbjct 1818 GGTGCTGGAGGAAGAACAGGTGGTCTGCATCTAAGAACTGTCTCCCGTGCA-G-CAAAT- 1874
Query 1718 AAAGCTTGGCAAATATACTAGCTATGGCCGAGACTGTGAGGGAAGTCATGCCACACGTGC 1777
|| | |||| | ||||||||| ||||||||||| || ||||||||| | ||||| ||||
Sbjct 1875 -AA-CATGGCGAGTATACTAGCAATGGCCGAGACAGTAAGGGAAGTCCTCCCACATGTGC 1932
Query 1778 CCGATGAAATTATTTTCCAGGACCTGCAGAGAACAAACTCTGTTGCTGTTACAGTGAACA 1837
| |||||||| ||||| ||||||||||| |||||||| |||||| |||||||||||||||
Sbjct 1933 CTGATGAAATAATTTTTCAGGACCTGCAAAGAACAAATTCTGTTTCTGTTACAGTGAACA 1992
Query 1838 ATCTTCTCCAGATGTGATGATAG-TTTGTGTAATA-TATACTAAGCACTTGCATTTCAAC 1895
||||||||||||||||| || | |||| ||| | || | || ||| || |||| | |
Sbjct 1993 ATCTTCTCCAGATGTGAAAATTGGTTTGCCTAAAAGTA-ATTA-GCAGTTCCATT-CGA- 2048
Query 1896 CTTAGGTATAGATTAATGATTGGGGACATATCCTTGTCCTT-AAGTCTTTACACACCACC 1954
| || ||||| || | || |||| ||||||| || |||| || || |||||||
Sbjct 2049 -TAAG--ATAGACGCATCA--GGAAACAT--CCTTGTCTTTTAAGT-TTGACTCACCACC 2100
Query 1955 -CAACATTCC-AAGC-TTCACCCGCTGTAAATATAAGGCAATGT-GCATCACTTTTTGCT 2010
|| |||| |||| || | |||||||||| ||||| | | ||| || |||||
Sbjct 2101 ACA-CATTTAGAAGCGTTGTCT-GCTGTAAATAGGAGGCATTCTTGCAACAGACTTTGC- 2157
Query 2011 ATAGAGAAGAAGAGGCTCTAGTGTATAGCTTCTGTTCATTGCTCTCT-TGCGAAAAATAA 2069
| |||| | | |||||||||| ||| | || ||||||||||||| | || || ||||||
Sbjct 2158 A-AGAGTA-A-GAGGCTCTAGAGTAGAT-TT-TGTTCATTGCTCT-TGTGGGATAAATAA 2211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115260451320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5