BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg492310

Length=267
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G25225.1 | Symbols:  | unknown protein; LOCATED IN: endomemb...   331    2e-90


> AT4G25225.1 | Symbols:  | unknown protein; LOCATED IN: endomembrane 
system; BEST Arabidopsis thaliana protein match is: unknown 
protein (TAIR:AT2G35736.2); Has 78 Blast hits to 78 proteins 
in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 
(source: NCBI BLink). | chr4:12922934-12923307 REVERSE LENGTH=374
Length=374

 Score =  331 bits (179),  Expect = 2e-90
 Identities = 208/221 (94%), Gaps = 5/221 (2%)
 Strand=Plus/Plus

Query  1    GGAGAAGAAGATGGGAATTATAAGGAGCAGCTTCTCTTTCATCACGGGAACAGTGTGCGG  60
            ||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||
Sbjct  42   GGAGAAGAAGATGGGGATAATAAGGAGCAGCTTCTCTTTCATCATGGGAACAGTGTGCGG  101

Query  61   GATCTACATCGCTCAGAACTACAACGTTCCTAACATCAAGAAGCTTGGTCACTGCGCCGT  120
            ||||||||||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct  102  GATCTACATCGCTCAGACCTACAACGTCCCTAACATCAAAAAGCTCGGTCACTGCGCCGT  161

Query  121  TTCAATGGCCAAGCAAGTTGAGGAGAAATATCGCAAGCCCAAAAGCAGAGACGACGTTTA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  162  TTCAATGGCCAAGCAAGTTGAGGAGAAATATCGCAAGCCCAAAAGCAGAGACGACGTTT-  220

Query  181  AGATAGAGATTCCACTT-GCAGCTTCTCCGGTGAATTCACC  220
             || |||  |||||||| |||||||||||||||||||||||
Sbjct  221  -GACAGA--TTCCACTTAGCAGCTTCTCCGGTGAATTCACC  258


 Score = 87.9 bits (47),  Expect = 4e-17
 Identities = 47/47 (100%), Gaps = 0/47 (0%)
 Strand=Plus/Plus

Query  221  AATTTTGCTACTTCTTAAGGTTTATGTGTAAATTCAGTGAAATTTGA  267
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  284  AATTTTGCTACTTCTTAAGGTTTATGTGTAAATTCAGTGAAATTTGA  330



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12215063007


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5