BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492311
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25220.1 | Symbols: RHS15 | root hair specific 15 | chr4:129... 2571 0.0
AT1G30560.1 | Symbols: | Major facilitator superfamily protein... 1081 0.0
> AT4G25220.1 | Symbols: RHS15 | root hair specific 15 | chr4:12920927-12922885
FORWARD LENGTH=1750
Length=1750
Score = 2571 bits (1392), Expect = 0.0
Identities = 1556/1635 (95%), Gaps = 11/1635 (1%)
Strand=Plus/Plus
Query 1 CCATTGAAGTTGAAGAAC--AGAGAGAG-GTAGAGAT-ACTTTTCTCCTCTCTTCAACTT 56
|||||| ||||||||||| |||| ||| | |||||| || |||||||||| || || ||
Sbjct 3 CCATTGTAGTTGAAGAACGGAGAGGGAGAG-AGAGATAAC-TTTCTCCTCTTTTAAAATT 60
Query 57 TCAAAGGTGATCTAAATTCCAGGTTTTGGCGTCGCGAGGAGTTG-TTAAAGAGATGGCGT 115
||||| |||||| |||||||||||| ||||||| ||||||||| || ||||||||||||
Sbjct 61 TCAAAAGTGATCCAAATTCCAGGTTCTGGCGTCTTGAGGAGTTGCTT-AAGAGATGGCGT 119
Query 116 CATGGACTTCATCCCAGTTCCTGTATGAAGAAACCAAGCCATGGGGTATTCAGTTCTTGG 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CATGGACTTCATCCCAGTTCCTGTATGAAGAAACCAAGCCATGGGGTATTCAGTTCTTGG 179
Query 176 AACGGTTTAAGCGTTCAGGAAGACTCTCCTTCAAGCAATACCAAGCCCTTGTCTTCATCT 235
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 AAAAGTTTAAGCGTTCAGGAAGACTCTCCTTCAAGCAATACCAAGCCCTTGTCTTCATTT 239
Query 236 TGACCTTTGTCGCCTACGTCGCCTTCCATGCTGCTCGAAAGCCCAATAGCATTGTCAAGG 295
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 240 TGACCTTTGTCGCCTACATCGCCTTCCATGCTGCCCGAAAGCCCAATAGCATTGTCAAGG 299
Query 296 GAACGCTTTCCGCATCAACAATCAAAGGCGGTTGGGCTCCTTTTGATGGACCCGATGGAC 355
|||| ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 300 GAACACTTTCTGCATCAACAATCGAAGGCGGTTGGGCTCCTTTTGATGGACCTGATGGAA 359
Query 356 CAGCCTTGCTTGGGCAGATCGACTTGGTTTTCCTCTCTGTCTATGCGGTTGGGATGTTTG 415
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 CAGCCTTGCTTGGGCAGATCGACTTGGCTTTCCTCTCTGTCTATGCGGTTGGGATGTTTG 419
Query 416 TGGCGGGCCACTTGGGAGATCGTTTGGATCTCAGGACGTTTCTGACTATCGGAATGATCG 475
|||| || |||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 420 TGGCAGGTCACTTGGGCGATCGTTTGGATCTCAGGACGTTTCTGACCATCGGTATGATCG 479
Query 476 GGACCGGCCTTTTCACAGCTCTATTTGGGGTCGCATTCTGGGCAAATTTCCACAGCTTCT 535
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 480 GGACCGGCCTTTTCACAGCTCTCTTCGGGGTCGCATTCTGGGCGAATTTCCACAGCTTCT 539
Query 536 ACTATTTCTTGGCGGTTCAGGTTATGGCGGGGTGGTTTCAGTCGATAGGTTGGCCTTGTG 595
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 ACTATTTCTTGGCGGTTCAGGTTATGGCGGGGTTGTTTCAGTCGATAGGTTGGCCTTGTA 599
Query 596 TTGTGGCCGTGCTCGGGAACTGGTTCGACAAGAAGAGAAGAGGAATGGTTATGGGTGTTT 655
| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 600 TCGTGGCTGTGCTCGGGAATTGGTTCGACAAGAAGAGAAGAGGAATGATTATGGGTGTTT 659
Query 656 GGAGTGCTCACACTTCCCTCGGTAACATCGCAGGGTCTCTGATCGCATCTGGGCTGCTTA 715
|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 660 GGAGCGCTCACACTTCCCTCGGTAACATTGCAGGGTCTCTGATCGCGTCTGGGCTGCTTA 719
Query 716 GATATGGGTGGGGTTGGTCATTTCTTGGCCCGGCTTTGCTCATGACTTTTCTTGGGATCG 775
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 720 GATATGGGTGGGGTTGGTCATTTCTTGGCCCGGCTTTTCTCATGACTTTTCTTGGGATCG 779
Query 776 TTGTTTACCTTTTCTTGCCGGTGAATCCTCCAACCGTTGAGGCTGAGAGAGATGGAACTG 835
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 780 TTGTTTACCTTTTCTTGCCGGTGAATCCTCCAACCGTTGAGGCAGAGAGAGATGGAACTG 839
Query 836 AAATTGACTCCACCATGAGGCTCGGTGACACCATTACAGAGAGCTTCTTGGAATCTAGAA 895
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 840 AAATTGACTCTACCATGAGGCTCGGTGACACCATTACAGAGAGCTTATTGGAATCTAGAA 899
Query 896 TGAGTACTGGATTCGATAGAAAGGCAGTCGGGTTCATGGCCGCTTGGAAAATCCCCGGTG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TGAGTACTGGATTCGATAGAAAGGCAGTCGGGTTCATGGCCGCTTGGAAAATCCCCGGTG 959
Query 956 TTGCTCCTTTCGCCTTCTGCCTCTTCTTCACCAAGTTGGTCTCATACACATTCCTCTACT 1015
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 960 TTGCTCCTTTCGCCTTCTGCCTCTTCTTCACAAAGTTGGTCTCATACACTTTCCTCTACT 1019
Query 1016 GGCTTCCTTTCTACGTCAGCCACAACATGATCGGAGGAGAGTACCTGTCTGAGGAGACAT 1075
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1020 GGCTTCCTTTCTACGTCAGCCACAACATGATCGGAGGAGAGTACCTGTCAGAGGAGACAT 1079
Query 1076 CAGGAAACTTGTCAACAATCTTCGATGTTGGAGGTGTTGTTGGTGGGGTCTTAGCCGGAT 1135
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1080 CAGGAAACTTGTCGACAATCTTCGATGTTGGAGGCGTTGTTGGTGGAGTCTTAGCCGGAT 1139
Query 1136 ACATGTCTGATCAACTCAACGGCAGAGCGATCACAGCAGCAGGATTCATGTACTTGGCAA 1195
|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1140 ACATATCTGATCAACTCAACGGCAGAGCCATCACAGCAGCAGGATTCATGTACTTGGCCA 1199
Query 1196 TCCCAGCTCTTTTCCTCTACAGAGTCTTGGGACATATCTCATTGACCATCAATGTCATCC 1255
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1200 TCCCAGCTCTTTTCCTCTACAGAGTCTTTGGACACATCTCATTGACCATCAATGTCATCC 1259
Query 1256 TCATGTTCATATCAGGAGTCTTCATCATTGGACCATTTGCTCTCATCACAACAGCTGTCT 1315
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TCATGTTCACATCAGGAGTCTTCATCATTGGACCATTTGCTCTCATCACAACAGCTGTCT 1319
Query 1316 CAGCTGATCTCGGAACACACAAATCTCTCAAAGGCAATGCCAGGGCTTTGGCTACAGTCA 1375
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1320 CAGCTGATCTCGGAACCCACAAATCTCTCAAAGGCAATGCAAGGGCTTTGGCTACAGTCT 1379
Query 1376 CAGCTATCATAGACGGTACAGGATCCGTCGGTGCTGCGATTGGACCAGTCCTCACTGGTT 1435
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CAGCTATCATAGACGGCACAGGATCCGTCGGTGCTGCGATTGGACCAGTCCTCACTGGTT 1439
Query 1436 ACATCTCTGCGATTAGCTGGGACGCAGTGTTTTACATGTTGATGACTGCGGCTTTGATCT 1495
|||||||||| || ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1440 ACATCTCTGCCATAAGCTGGGACGCAGTGTTTTACATGTTGATGACTGCAGCATTGATCT 1499
Query 1496 CTGGATTGTTGCTCACTAAACTAATCATAGCAGAAGTCAAGGCTTTGTTGTTTGGATCAG 1555
|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1500 CTGGATTGTTGCTCACTAAACTAATCATAGCAGAAGTCAAAGCGTTATTGTTTGGATCAG 1559
Query 1556 AAGAAGAAGTAGCTGCATCATCATCATCACCA---GCATCCAGAGCTCCCATTGATGTCC 1612
|||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1560 AAGATGAAGTAGCTGCATCATCATCATCACCACCAGCATCCAGACCTCCCATTGATGTCC 1619
Query 1613 TCCTTTGAGtttttt 1627
|| ||||||||||||
Sbjct 1620 TCGTTTGAGTTTTTT 1634
> AT1G30560.1 | Symbols: | Major facilitator superfamily protein
| chr1:10824761-10826293 FORWARD LENGTH=1533
Length=1533
Score = 1081 bits (585), Expect = 0.0
Identities = 1195/1485 (80%), Gaps = 59/1485 (4%)
Strand=Plus/Plus
Query 109 ATGGCGTCATGGACTTCATCCCAGTTCCTGTATGAAGAAACCAAGCCATGGGGTATTCAG 168
|||||||| ||||||||||| | ||||| ||||||||| || ||| ||||||||
Sbjct 1 ATGGCGTCGTGGACTTCATCTGAATTCCTCTATGAAGAAGTAAAACCACCAGGTATTCAT 60
Query 169 TTCTTGGAACGGTTT-AAGCGTTCAGGAAGACTCTCCTTCAAGCAATACCAAGCCCTTGT 227
||| | |||| |||| | ||||||||||| |||||| ||||||||||| ||||| | ||
Sbjct 61 TTCCTAGAAC-GTTTCAGGCGTTCAGGAAAACTCTCTTTCAAGCAATATCAAGCAATGGT 119
Query 228 CTTCATCTTGACCTTTGTCGCCTACGTCGCCTTCCATGCTGCTCGAAAGCCCAATAGCAT 287
||| |||||||||| | || || | |||||||| || | |||||||| || |||||
Sbjct 120 CTTTGTCTTGACCTTCATTGCTTATATTGCCTTCCACGCAACACGAAAGCCTAACAGCAT 179
Query 288 TGTCAAGGGAACGCT-T-T----------CC-G-CA--TCAA-----CA-ATCAAAGGCG 325
||||| ||||| || | | || | || |||| || || ||||| |
Sbjct 180 CGTCAAAGGAACACTCTCTGAACAACCAACCGGACATTTCAAGGGTGCAGAT-AAAGGTG 238
Query 326 GTTGGGCTCCTTTTGATGGACCCGATGGACCAGCCT-TGCTTGGGCAGATCGACTTGGTT 384
| ||||||||||| ||||| || |||||| ||| || ||||||| || ||||| |||| |
Sbjct 239 GATGGGCTCCTTTCGATGGTCCAGATGGAACAG-CTCTGCTTGGACAAATCGATTTGGCT 297
Query 385 TTCCTCTCTGTCTATGCGGTTGGGATGTTTGTGGCGGGCCACTTGGGAGATCGTTTGGAT 444
||||||||||| || |||||||| ||||||||||| || || ||||| |||||||||||
Sbjct 298 TTCCTCTCTGTTTACGCGGTTGGAATGTTTGTGGCTGGTCATTTGGGTGATCGTTTGGAC 357
Query 445 CTCAGGACGTTTCTGACTATCGGAATGATCGGGACCGGCCT-TTTCACAGCTCTATTTGG 503
|||||||||||||| || || || ||| ||||||| || | | | || ||||| |||||
Sbjct 358 CTCAGGACGTTTCTAACAATAGGTATGGTCGGGACAGGAGTGTGT-ACTGCTCTGTTTGG 416
Query 504 GGTCGCATTCTGGGCAAATTTCCACAGC-TTCTACTATTT-CTTGGCGGTTCAGGTTA-T 560
||||| || ||||| ||| |||| || ||||||||||| ||| ||| |||| | | |
Sbjct 417 AGTCGCTTTTTGGGCCAATATCCA-TGCTTTCTACTATTTCCTT-GCGATTCA-GACATT 473
Query 561 GGCGGGGTGGTTTCAGTCGATAGGTTGGCCTTGTGTTGTGGCCGTGCTCGGG-AACTGGT 619
||| |||||||||||||| || || |||||||| || || || || | ||| |||||||
Sbjct 474 GGCAGGGTGGTTTCAGTCTATTGGATGGCCTTGCGTGGTTGCGGT-TTTGGGAAACTGGT 532
Query 620 TCGACAAGAAGAGAAGAGGAATGGTTATGGGTGTTTGGAGTGCTCACACTTCCCTCGGTA 679
| || |||||||| |||||| | |||||||||||||||||||||| || || | || |
Sbjct 533 TTGATAAGAAGAGGAGAGGAGTCATTATGGGTGTTTGGAGTGCTCATACATCATTAGGGA 592
Query 680 ACATCGCAGGGTCTCTGATCGCAT-CTGGGCTGCTTAG-A-TATGGGTGGGGTTGGTCAT 736
| ||| ||| || | ||||| | | ||||| || | | | ||| ||||| ||||| |
Sbjct 593 ATATCATTGGGACTTTAATCGC-TACGGGGCT--TTTGAAGTTTGGTTGGGGATGGTCTT 649
Query 737 TTCTTGGCCCGGCTTTGCTCATGACTTTTCTTGGGATCGTTGTTTACCTTTTCTTGCCGG 796
|| |||| |||||||||||||| || |||||||| || || |||||||| |||||||| |
Sbjct 650 TTGTTGGTCCGGCTTTGCTCATTACGTTTCTTGGCATTGTGGTTTACCTATTCTTGCCTG 709
Query 797 TGAATCCTCCA-ACCGTTGAGGCTGAGAGAGATGGAACTGAAATTGACTCCACCATGAGG 855
|||| ||| || | ||||| |||||||||||||| | |||| |||| ||||| |||||
Sbjct 710 TGAACCCT-CATGCTGTTGAAGCTGAGAGAGATGGGAGTGAAGTTGATTCCACAATGAGA 768
Query 856 CTCGGTGACACCATTACAGAGAGCTTCTTGGAA--TCTAGAATGAGTACTGGATTCGATA 913
||||||||||||||||||||||| ||||| || ||||| | |||||||||||||||||
Sbjct 769 CTCGGTGACACCATTACAGAGAGTTTCTT--AAGCTCTAGGACGAGTACTGGATTCGATA 826
Query 914 GAAAG-GCAGTCGGGTTCATGGCCGCTTGGAAAATCCCCGGTGTTGCTCCTTTCGCCTTC 972
| ||| || ||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 827 G-AAGAGCTGTCGGGTTCTTAGCGGCTTGGAAAATCCCCGGTGTTGCTCCTTTCGCCTTC 885
Query 973 TGCCTCTTCTTCACCAAGTTGGTCTCATACACATTCCTCTACTGGCTTCCTTTCTACGTC 1032
|| |||||||||||||| ||||||| |||||||||||||| |||||||||||||||||
Sbjct 886 TGTCTCTTCTTCACCAAACTGGTCTCTTACACATTCCTCTATTGGCTTCCTTTCTACGTA 945
Query 1033 AGCCACAACATGA--TCGGAGGAGAGTACCTGTCTGAGGAGACATCAGGAAACTTGTCAA 1090
||||| | | ||| | |||||||| | |||| |||||||||| |||||||| || |
Sbjct 946 AGCCAGA-C-TGAGATAGGAGGAGAACAATTGTCACAGGAGACATCGGGAAACTTATCGA 1003
Query 1091 CAATCTTCGATGTTGGAGGTGTTGTTGGTGGGGTCTTAGCCGGATACATGTCTGATCAAC 1150
|| |||||||||||||||| |||||||| || ||||||||||||| | ||||| || |
Sbjct 1004 CACTCTTCGATGTTGGAGGCGTTGTTGGAGGAATCTTAGCCGGATATTTCTCTGACCAGC 1063
Query 1151 TCAACGGCAGAGCGATCACAGCAGCAGGATTCATGTACTTGGCAATCCCAGCTCTTTTCC 1210
|| |||| ||||| || ||||| | ||||||||| ||||| ||||||||||||| ||||
Sbjct 1064 TCGACGGGAGAGCAATTACAGCCGGAGGATTCATCTACTTAACAATCCCAGCTCTGTTCC 1123
Query 1211 TCTACAGAGTCTTGGGACATATCTCATTGACCATCAATGTCATCCTCATGTTCATATCAG 1270
|||||||| | | || ||| ||||| |||| |||||| |||||||||||||| || | |
Sbjct 1124 TCTACAGAATATACGGTCATGTCTCAATGACAATCAATATCATCCTCATGTTCGTAGCTG 1183
Query 1271 GAGTCTTCATCATTGGACCATTT-GCTCTCATCACAACAGCTGTCT-CAGCTGATCTCGG 1328
|| | || | | |||||| || |||||||||||||| || || | |||||||||||||
Sbjct 1184 GATTATTTGTTAATGGACC-TTACGCTCTCATCACAACCGCGGT-TGCAGCTGATCTCGG 1241
Query 1329 AACACACAAATCTCTCAAAGGCAATGCCAGGGCTTTGGCTACAGTCACAGCTATCATAGA 1388
|| ||||| || || ||||||||||| ||||||||||||||||| || ||||| |||||
Sbjct 1242 TACTCACAAGTCGCTTAAAGGCAATGCAAGGGCTTTGGCTACAGTGACTGCTATTATAGA 1301
Query 1389 CGGTACAGGATCCGTCGGTGCTGCGATTGGACCAGTCCTCACTGGTTACATCTCTGCGAT 1448
|| |||||||| || ||||| || |||||||| || || || ||||| ||| |||||||
Sbjct 1302 TGGAACAGGATCAGTTGGTGCAGCCATTGGACCTGTTCTTACAGGTTATATCGCTGCGAT 1361
Query 1449 TAGCTGGGACGCAGTGTTTTACATGTTGATGACTGCGGCTTTGATCTCTGGATTGTTGCT 1508
||| ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1362 TAGTTGGGATGCTGTGTTTTACATGTTGATGACTGCAGCTTTGATCTCTGGATTGTTGCT 1421
Query 1509 CACTAAACTAATCATAGCAGAAGTCAAGGCTTTGTTGTTTGGATC 1553
||||| || || |||| |||||| || ||||||||| ||||||
Sbjct 1422 CACTACGCTTATTATAGAAGAAGTGAAAACTTTGTTGTATGGATC 1466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83332904700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5