BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg492313
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25200.1 | Symbols: ATHSP23.6-MITO, HSP23.6-MITO | mitochond... 1098 0.0
> AT4G25200.1 | Symbols: ATHSP23.6-MITO, HSP23.6-MITO | mitochondrion-localized
small heat shock protein 23.6 | chr4:12917017-12918053
FORWARD LENGTH=900
Length=900
Score = 1098 bits (594), Expect = 0.0
Identities = 720/779 (92%), Gaps = 16/779 (2%)
Strand=Plus/Plus
Query 1 CACACAGTTCTCAGATAAAACACTACTTACTCTCTGTTAAAACTTTCTCAAAAAAGCTTC 60
|||||||||||||||| ||| |||| |||| |||||||||||||||||| ||||||||
Sbjct 2 CACACAGTTCTCAGAT-AAATACTA--AACTCACTGTTAAAACTTTCTCAACAAAGCTTC 58
Query 61 ATATTTCTCTACAAATGGCATCTTCTCTCGCTCTTAAGAGACTTCTTTCTTCTTCCATCG 120
| |||||||||||||||||||| ||||||||||||||||||| || || || |||||||
Sbjct 59 CTGTTTCTCTACAAATGGCATCTGCTCTCGCTCTTAAGAGACTCCTATCATCCTCCATCG 118
Query 121 TTCCACGTTCCCGTAGCGTTCTTAGTCCAGCCGTTTCCTCTCGCCTCTTCAACACCAACG 180
||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 119 CTCCACGTTCCCGTAGTGTTCTTCGTCCAGCTGTTTCCTCTCGCCTCTTCAACACCAACG 178
Query 181 CCGTGAGGAGCTACGGCGACGATGGCGAGAATGG-GCAAGGCGTTGATTTCGATCGCCGC 239
|||| |||||||||| |||||| ||||| ||||| | | ||||||||||| ||||||||
Sbjct 179 CCGTTAGGAGCTACGACGACGACGGCGAAAATGGAG-ACGGCGTTGATTTATATCGCCGC 237
Query 240 TCTGTTCCTCGCCGCCGTGGTGATTTCTTCTCAGATGTGTTTGATCCGTTTTCGCCGACG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCTGTTCCTCGCCGCCGTGGTGATTTCTTCTCAGATGTGTTTGATCCGTTTTCGCCGACG 297
Query 300 AGGAGCGTTAGTCAAGTGCTGAATCTGATGGACCAGTTCATGGAGAATCCTCTGTTATCA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGGAGCGTTAGTCAAGTGCTGAATCTGATGGACCAGTTCATGGAGAATCCTCTGTTATCA 357
Query 360 GCTACTCGTGGCATGGGAGCTTCAGGAGCTCGTCGTGGTTGGGATATAAAAGAGAAAGAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GCTACTCGTGGCATGGGAGCTTCAGGAGCTCGTCGTGGTTGGGATATAAAAGAGAAAGAC 417
Query 420 GATGCTCTTTACCTGAGAATCGACATGCCTGGGCTGAGCAGAGAGGATGTGAAGCTGGCT 479
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GATGCTCTGTACCTGAGAATCGACATGCCTGGGCTGAGCAGAGAGGATGTGAAGCTGGCT 477
Query 480 TTGGAGCAGGACACTCTGGTGATTAGAGGAGAAGGGAAATACGAGGACGATGCTGGCGAG 539
||||||||||||||||||||||||||||||||||| ||| ||||||| |||| |||||||
Sbjct 478 TTGGAGCAGGACACTCTGGTGATTAGAGGAGAAGGAAAAAACGAGGAAGATGGTGGCGAG 537
Query 540 GAAGGAGATCAGAGCGGTAATCGGAGATTCACTAGCAGGATTGGGTTACCGGAGAAGATT 599
|||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 538 GAAGGAGA---GAGCGGTAATCGGAGATTCACAAGCAGGATTGGATTACCGGATAAGATT 594
Query 600 TACAAGGTTGATGAGATTAAGGCGGAGATGAAGAACGGAGTGTTGAAAGTTGTGATTCCG 659
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 595 TACAAGATCGATGAGATTAAGGCGGAGATGAAGAACGGAGTGTTGAAAGTTGTGATCCCG 654
Query 660 AAGATGAAAGAGCAAGAGAGAAATGATGTGCGTCAGATCGAGATTAACTAAAA-CGTTGT 718
||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||| |
Sbjct 655 AAGATGAAAGAACAAGAGAGAAATGATGTTCGTCAGATCGAGATCAACTAAAAACGTCGA 714
Query 719 CGgttttttgttttgtttt-gttttgttttttg-tctttgaataa-a-gtgtgtgtagt 773
|| |||||| | | ||| | |||||||| | | ||||||||||| | |||||||||||
Sbjct 715 CG-TTTTTT-TCT-GTTCTAGTTTTGTTGATAGGTCTTTGAATAAGAAGTGTGTGTAGT 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40589190776
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5